Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 9.6e-156 553.5 294 100.0
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 1.1e-151 540.0 290 97.6
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 2.5e-151 538.9 290 96.6
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 3.5e-150 535.0 290 92.8
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.6e-150 534.6 290 97.2
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.3e-149 533.1 290 96.2
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 4.3e-148 528.1 292 90.1
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.3e-147 526.6 292 89.7
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.6e-147 526.2 292 90.1
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 3.4e-145 518.5 293 89.1
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.9e-144 515.4 294 87.8
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 8.5e-144 513.8 290 89.0
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 3.2e-143 511.9 289 91.3
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 7.2e-143 510.8 294 86.7
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 1.6e-142 509.6 292 87.0
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 3.3e-140 501.9 290 85.5
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 9.7e-140 500.4 289 86.9
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 2.8e-139 498.8 294 85.0
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.7e-139 498.4 294 84.0
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 4.8e-139 498.0 290 85.2
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 4.8e-139 498.0 289 85.5
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 6.3e-139 497.7 289 84.8
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 8.2e-139 497.3 289 84.4
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 1.4e-138 496.5 305 87.2
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 3.1e-138 495.4 294 84.0
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 3.1e-138 495.4 289 84.1
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 9.1e-138 493.8 294 83.0
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.0e-137 492.7 292 82.9
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 3.4e-137 491.9 294 83.0
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 3.4e-137 491.9 294 83.0
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 3.4e-137 491.9 293 81.9
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 3.4e-137 491.9 292 82.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 7.7e-137 490.7 292 82.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 7.7e-137 490.7 294 83.3
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.7e-136 489.6 294 82.3
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 2.2e-136 489.2 294 82.7
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 2.2e-136 489.2 294 81.6
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 5.0e-136 488.0 294 82.7
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 5.0e-136 488.0 294 82.7
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 6.5e-136 487.6 294 82.7
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 6.5e-136 487.6 290 84.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 2.5e-135 485.7 294 82.7
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 2.5e-135 485.7 289 82.7
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 4.2e-135 485.0 294 81.3
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 5.5e-135 484.6 294 82.7
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 5.5e-135 484.6 291 83.2
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 5.5e-135 484.6 294 82.7
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 9.4e-135 483.8 294 82.3
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 9.4e-135 483.8 297 81.8
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 9.4e-135 483.8 289 82.4
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 2.7e-134 482.3 294 80.6
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 3.6e-134 481.9 289 82.0
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 3.6e-134 481.9 294 81.6
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 4.7e-134 481.5 294 81.3
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 6.1e-134 481.1 292 82.2
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 6.1e-134 481.1 292 82.2
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 1.0e-133 480.3 294 80.3
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 1.0e-133 480.3 294 80.3
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 1.0e-133 480.3 294 80.3
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.4e-133 479.9 294 80.3
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.4e-133 479.9 294 80.3
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 1.4e-133 479.9 290 82.4
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 3.0e-133 478.8 289 81.0
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 6.7e-133 477.6 291 82.1
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 6.7e-133 477.6 289 80.6
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.0e-132 476.1 292 82.2
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 4.4e-132 474.9 289 80.6
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 5.7e-132 474.6 292 81.5
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 5.7e-132 474.6 291 81.4
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 5.7e-132 474.6 292 86.6
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 7.4e-132 474.2 289 81.3
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 7.4e-132 474.2 292 81.8
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 7.4e-132 474.2 291 81.4
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 9.7e-132 473.8 289 80.6
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.3e-131 473.4 289 80.6
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.3e-131 473.4 292 81.2
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.7e-131 473.0 290 81.0
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 2.8e-131 472.2 306 77.8
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 3.7e-131 471.9 294 80.6
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.8e-130 469.5 292 85.6
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 2.4e-130 469.2 291 80.4
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 3.1e-130 468.8 301 81.1
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 5.3e-130 468.0 288 80.2
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 7.0e-130 467.6 286 81.1
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 9.1e-130 467.2 291 79.7
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 9.1e-130 467.2 291 80.4
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.2e-129 466.8 289 79.2
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 1.6e-129 466.5 289 80.6
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.6e-129 466.5 290 82.1
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 2.6e-129 465.7 291 79.7
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 1.0e-128 463.8 291 80.8
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 2.2e-128 462.6 293 78.8
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.9e-128 462.2 290 80.0
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 5.0e-128 461.5 291 80.4
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 5.0e-128 461.5 327 74.3
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 6.5e-128 461.1 291 80.4
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 8.5e-128 460.7 289 78.2
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 8.5e-128 460.7 289 78.5
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.5e-127 459.9 295 83.1
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 3.2e-127 458.8 288 78.5
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 5.5e-127 458.0 286 77.6
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 9.4e-127 457.2 292 79.1
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.2e-126 456.8 294 82.3
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 1.6e-126 456.4 289 77.5
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.7e-126 455.7 294 82.0
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.7e-126 455.7 289 78.2
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 4.7e-126 454.9 289 76.1
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 8.0e-126 454.1 289 76.8
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 8.0e-126 454.1 289 77.5
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 4.0e-125 451.8 286 76.9
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.2e-125 451.4 296 81.4
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 8.8e-125 450.7 296 81.4
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 8.8e-125 450.7 286 76.2
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 8.8e-125 450.7 290 79.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 8.8e-125 450.7 289 76.1
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.5e-124 449.9 289 76.8
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 2.0e-124 449.5 289 76.1
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 3.3e-124 448.7 291 78.0
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 4.4e-124 448.4 289 76.1
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 7.5e-124 447.6 291 78.0
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 9.7e-124 447.2 292 81.8
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.7e-123 446.4 293 76.5
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.4e-122 442.6 305 74.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 2.9e-120 435.6 293 78.5
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.4e-117 426.8 308 71.1
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 4.4e-116 421.8 260 81.5
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.7e-115 419.9 447 53.9
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 2.8e-115 419.1 274 75.9
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 6.3e-115 417.9 286 72.4
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 2.4e-114 416.0 310 71.0
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 5.9e-113 411.4 291 73.9
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 7.7e-113 411.0 303 71.6
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 7.2e-111 404.4 255 77.3
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.5e-108 396.7 231 84.0
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 4.4e-108 395.2 257 76.3
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 1.2e-105 387.1 294 68.0
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 2.7e-105 386.0 297 67.0
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-104 383.3 287 65.9
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.8e-104 382.1 233 80.7
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.5e-103 379.4 287 65.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 4.3e-103 378.6 287 64.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.6e-100 369.4 231 78.4
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 9.2e-98 360.9 283 61.1
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 1.6e-97 360.1 297 67.3
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 5.2e-93 345.1 294 62.2
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.1e-90 337.4 270 68.9
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 2.0e-89 333.2 203 81.3
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 7.8e-81 304.7 285 56.1
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 7.1e-74 281.6 287 49.5
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.5e-71 273.9 290 49.3
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.1e-65 253.4 281 45.9
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.3e-64 250.8 285 46.0
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 9.9e-60 234.6 163 69.9
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 8.4e-59 231.5 113 99.1
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 2.1e-57 226.9 154 70.8
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 2.3e-56 223.4 151 76.2
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 4.0e-53 212.6 118 89.0
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 2.2e-22 110.5 73 75.3
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.4e-21 107.8 52 96.2
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 6.9e-21 105.5 75 70.7
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.5e-20 104.4 66 75.8
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.5e-20 104.4 152 41.4
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 2.6e-20 103.6 124 47.6
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 3.2e-18 96.7 70 70.0
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 2.1e-17 94.0 57 78.9
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 6.7e-16 89.0 78 61.5
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 6.7e-16 89.0 151 42.4
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 1.1e-15 88.2 81 60.5
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 2.2e-14 84.0 58 70.7
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 2.2e-14 84.0 58 70.7
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 1.4e-13 81.3 78 57.7
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 1.8e-08 64.3 38 81.6
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 3.0e-08 63.5 41 65.9
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 2.6e-07 60.5 48 64.6


User provided reference genes

Program Settings