Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 0.0e+00 1340.9 945 100.0
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 0.0e+00 1184.5 932 91.4
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 0.0e+00 1173.7 945 89.1
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 0.0e+00 1160.6 931 89.2
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 0.0e+00 1157.9 931 89.2
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 0.0e+00 1112.1 945 86.3
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 0.0e+00 1080.1 945 85.2
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.4e-309 1066.2 935 84.3
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 7.8e-308 1060.4 931 83.0
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.3e-307 1058.9 934 82.1
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 2.5e-306 1055.4 931 82.8
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 3.3e-306 1055.0 937 82.6
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.3e-306 1054.7 933 83.4
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 6.2e-305 1050.8 945 82.1
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.1e-304 1050.0 929 82.9
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 1.4e-304 1049.7 932 82.4
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.5e-303 1046.2 937 80.3
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.5e-303 1046.2 946 79.4
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 7.8e-300 1033.9 1105 71.9
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 9.6e-298 1026.9 932 82.1
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.8e-296 1022.7 932 81.5
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 4.0e-296 1021.5 970 66.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.7e-292 1008.8 932 80.4
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 1.0e-291 1006.9 932 69.6
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.1e-291 1004.6 935 80.6
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 8.7e-291 1003.8 931 80.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 2.1e-289 999.2 947 79.8
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 6.2e-289 997.7 931 69.4
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 9.0e-288 993.8 932 79.2
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 1.5e-287 993.0 942 77.4
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 7.6e-287 990.7 932 79.1
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 2.9e-286 988.8 932 78.8
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 5.4e-285 984.6 931 78.0
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 7.1e-285 984.2 943 79.0
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 2.7e-284 982.2 943 79.9
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 4.3e-282 974.9 935 80.2
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.6e-281 973.0 932 79.5
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 2.8e-281 972.2 933 75.6
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.8e-281 972.2 943 78.0
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 4.8e-281 971.5 943 78.0
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 6.9e-280 967.6 932 78.4
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 1.5e-279 966.5 942 78.6
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 2.0e-279 966.1 942 78.0
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 7.6e-279 964.1 940 77.8
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 4.2e-277 958.4 933 78.1
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.5e-277 958.0 933 79.2
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 9.3e-277 957.2 943 78.0
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.3e-275 953.4 935 78.3
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.8e-275 953.0 934 77.6
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 3.0e-275 952.2 983 75.4
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 6.7e-275 951.0 934 77.6
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.3e-274 948.7 934 77.5
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.2e-273 944.5 934 77.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 6.2e-273 944.5 933 77.2
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 4.0e-272 941.8 934 77.6
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 5.3e-272 941.4 934 77.6
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 9.0e-272 940.6 932 76.0
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.5e-271 939.9 931 76.2
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 2.0e-271 939.5 932 73.5
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.0e-270 937.2 934 77.1
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 1.1e-269 933.7 953 66.5
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.1e-269 933.7 932 77.5
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 3.2e-269 932.2 934 77.2
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 4.2e-269 931.8 935 77.2
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 9.3e-269 930.6 946 73.3
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 3.5e-268 928.7 942 75.8
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 3.5e-268 928.7 923 77.6
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 1.6e-265 919.8 935 74.7
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.7e-265 918.7 938 74.3
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 3.1e-264 915.6 932 73.8
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 3.1e-264 915.6 943 75.4
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 4.1e-264 915.2 719 82.9
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.0e-263 912.9 933 74.0
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 7.6e-263 911.0 932 74.4
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 1.7e-262 909.8 934 68.3
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 2.9e-262 909.1 927 76.6
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.6e-260 903.3 955 63.6
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 3.6e-260 902.1 934 69.6
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 1.0e-259 900.6 932 73.8
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 9.7e-258 894.0 943 72.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.8e-257 892.5 944 75.1
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.1e-256 889.0 944 72.5
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 5.9e-255 884.8 959 53.4
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 1.2e-252 877.1 932 73.4
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 7.9e-252 874.4 932 73.4
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 1.4e-251 873.6 932 73.3
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-251 873.2 934 75.4
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 6.7e-251 871.3 941 74.5
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 3.3e-250 869.0 932 73.2
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.1e-248 864.0 934 72.9
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.1e-240 835.9 884 74.7
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.7e-239 831.2 937 73.5
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 8.5e-238 827.8 819 79.9
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.1e-236 823.2 937 71.8
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 2.7e-236 822.8 938 72.7
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 8.0e-236 821.2 935 68.8
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 4.1e-232 808.9 925 71.0
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 8.3e-225 784.6 856 75.4
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 3.5e-223 779.2 1002 63.0
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 5.5e-221 771.9 936 66.5
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.4e-208 730.7 937 66.2
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 8.9e-203 711.4 922 64.3
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 7.8e-199 698.4 943 57.2
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.1e-187 659.8 876 65.0
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 1.6e-183 647.5 694 67.3
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 6.0e-175 619.0 926 60.5
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.0e-170 604.0 929 59.5
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 4.3e-165 586.3 940 56.9
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 4.3e-165 586.3 940 56.9
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 4.9e-161 572.8 967 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.3e-158 564.7 935 56.6
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.3e-137 495.0 644 48.1
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.3e-129 468.4 575 65.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 2.3e-110 404.4 293 73.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.1e-107 395.6 945 48.9
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 2.3e-105 387.9 590 42.9
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 5.0e-105 386.7 950 43.8
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 2.7e-74 284.6 723 43.2
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.6e-63 247.7 183 71.6
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 1.8e-49 202.2 135 71.1
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.8e-47 194.9 127 72.4
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.9e-44 184.9 142 62.7
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.8e-39 168.3 188 49.5
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.8e-38 165.6 125 64.0
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 5.8e-37 160.6 115 70.4
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.6e-34 152.5 116 61.2
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 6.3e-31 140.6 137 51.8
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 5.1e-25 120.9 84 72.6
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 5.7e-24 117.5 77 76.6
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 6.9e-22 110.5 79 70.9
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 1.5e-21 109.4 89 65.2
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.2e-20 105.5 69 78.3
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 3.8e-20 104.8 74 66.2
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.2e-19 101.7 92 54.3
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.9e-18 97.1 82 57.3
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.6e-16 92.0 71 74.6
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 7.7e-13 80.5 103 49.5
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 3.2e-11 75.1 52 71.2
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.8e-09 69.3 50 68.0
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 5.7e-08 64.3 56 58.9
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 3.7e-07 61.6 136 27.2
CiPaw.01G122500 Carya illinoinensis HOM05D000836 ORTHO05D000709 1.1e-06 60.1 146 25.3
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 1.8e-06 59.3 146 26.7
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 5.3e-06 57.8 157 24.2
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 5.3e-06 57.8 117 30.8
EL10Ac5g11428 Beta vulgaris HOM05D003769 ORTHO05D004521 7.0e-06 57.4 157 26.8
Sed0000820 Sechium edule HOM05D000836 ORTHO05D000709 7.0e-06 57.4 118 28.8
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 9.1e-06 57.0 171 26.9
Zm00001eb258660 Zea mays HOM05D000836 ORTHO05D000709 9.1e-06 57.0 137 29.2


User provided reference genes

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