Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G289100 Theobroma cacao HOM05D004869 ORTHO05D005893 0.0e+00 1694.5 828 100.0
COL.COLO4_13820 Corchorus olitorius HOM05D004869 ORTHO05D005893 0.0e+00 1549.6 829 91.3
Duzib212G0051 Durio zibethinus HOM05D004869 ORTHO05D005893 0.0e+00 1547.3 828 90.5
Gorai.005G061800 Gossypium raimondii HOM05D004869 ORTHO05D005893 0.0e+00 1509.2 829 87.8
Gohir.A02G051000 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1494.2 829 87.2
Gohir.D02G055900 Gossypium hirsutum HOM05D004869 ORTHO05D005893 0.0e+00 1476.5 829 86.4
Cpa.g.sc50.161 Carica papaya HOM05D004869 ORTHO05D005893 0.0e+00 1397.1 828 81.0
CiPaw.01G145300 Carya illinoinensis HOM05D004869 ORTHO05D005893 0.0e+00 1379.8 831 79.9
Atru.chr4.2905 Acer truncatum HOM05D004869 ORTHO05D005893 0.0e+00 1377.8 828 80.1
QL06p010392 Quercus lobata HOM05D004869 ORTHO05D005893 0.0e+00 1370.1 832 79.6
THA.LOC104802695 Tarenaya hassleriana HOM05D004869 ORTHO05D005893 0.0e+00 1360.5 825 78.9
Cfa015427 Carpinus fangiana HOM05D004869 ORTHO05D005893 0.0e+00 1352.0 832 78.1
TWI73G0801 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1347.4 834 78.3
Dinv44350 Davidia involucrata HOM05D004869 ORTHO05D005893 0.0e+00 1345.5 817 78.5
Carub.0003s0635 Capsella rubella HOM05D004869 ORTHO05D005893 0.0e+00 1340.1 826 77.7
Hma1.2p1_1352F.1_g277460 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 0.0e+00 1339.3 831 77.9
Thhalv10020074m.g Eutrema salsugineum HOM05D004869 ORTHO05D005893 0.0e+00 1338.6 826 77.4
AT3G06810 Arabidopsis thaliana HOM05D004869 ORTHO05D005893 0.0e+00 1338.2 826 77.2
AL3G17930 Arabidopsis lyrata HOM05D004869 ORTHO05D005893 0.0e+00 1336.2 826 77.1
Ciclev10004342m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1333.5 828 77.4
Ciclev10004291m.g Citrus clementina HOM05D004869 ORTHO05D005893 0.0e+00 1332.8 829 77.6
VMungo1309G2596 Vigna mungo HOM05D004869 ORTHO05D005893 0.0e+00 1332.8 833 77.8
Prupe.1G131800 Prunus persica HOM05D004869 ORTHO05D005893 0.0e+00 1332.4 820 78.4
RcHm_v2.0_Chr4g0423401 Rosa chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1332.0 816 77.8
vmacro08186 Vaccinium macrocarpon HOM05D004869 ORTHO05D005893 0.0e+00 1332.0 851 75.9
TWI53G1493 Tripterygium wilfordii HOM05D004869 ORTHO05D005893 0.0e+00 1330.9 833 77.7
Phvul.009G250700 Phaseolus vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1329.3 829 77.6
Rhsim04G0226400 Rhododendron simsii HOM05D004869 ORTHO05D005893 0.0e+00 1325.8 829 76.5
MD16G1164100 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1325.1 814 78.3
Glyma.09G042000 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1322.4 833 77.0
GSVIVG01035107001 Vitis vinifera HOM05D004869 ORTHO05D005893 0.0e+00 1319.3 828 77.4
Sp3g05780 Schrenkiella parvula HOM05D004869 ORTHO05D005893 0.0e+00 1318.9 826 76.6
CARHR081430 Cardamine hirsuta HOM05D004869 ORTHO05D005893 0.0e+00 1317.0 826 76.3
Actinidia40299 Actinidia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1315.8 831 76.7
FvH4_4g18700 Fragaria vesca HOM05D004869 ORTHO05D005893 0.0e+00 1315.4 816 77.1
A05p41290 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1315.1 827 76.8
BraA05t22852Z Brassica rapa HOM05D004869 ORTHO05D005893 0.0e+00 1313.5 825 77.0
Aa31LG5G17400 Aethionema arabicum HOM05D004869 ORTHO05D005893 0.0e+00 1310.4 827 75.8
C05p60510 Brassica napus HOM05D004869 ORTHO05D005893 0.0e+00 1310.4 827 77.0
Potri.008G219000 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1310.4 832 76.2
Glyma.15G150900 Glycine max HOM05D004869 ORTHO05D005893 0.0e+00 1309.7 833 76.5
MD13G1164300 Malus domestica HOM05D004869 ORTHO05D005893 0.0e+00 1309.3 814 77.5
Lj6g0019427 Lotus japonicus HOM05D004869 ORTHO05D005893 0.0e+00 1307.7 818 78.9
CANSAT78G0178 Cannabis sativa HOM05D004869 ORTHO05D005893 0.0e+00 1306.2 831 75.3
FAN12G0537 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1305.4 825 76.1
BolC5t34705H Brassica oleracea HOM05D004869 ORTHO05D005893 0.0e+00 1305.0 827 76.8
Sabra10G0006600 Salix brachista HOM05D004869 ORTHO05D005893 0.0e+00 1302.3 832 75.6
Oeu016255.1 Olea europaea HOM05D004869 ORTHO05D005893 0.0e+00 1302.0 838 76.1
FAN12G1313 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1297.0 855 73.9
FAN17G0377 Fragaria x ananassa HOM05D004869 ORTHO05D005893 0.0e+00 1297.0 833 75.2
Potri.010G010448 Populus trichocarpa HOM05D004869 ORTHO05D005893 0.0e+00 1295.8 829 75.9
ClCG05G006260 Citrullus lanatus HOM05D004869 ORTHO05D005893 0.0e+00 1290.8 831 75.3
Sopen01g027900 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1290.0 831 75.0
Peaxi162Scf00065g01213 Petunia axillaris HOM05D004869 ORTHO05D005893 0.0e+00 1289.2 831 74.7
MELO3C006684.2 Cucumis melo HOM05D004869 ORTHO05D005893 0.0e+00 1287.7 831 74.4
Cc03_g01500 Coffea canephora HOM05D004869 ORTHO05D005893 0.0e+00 1285.8 831 74.5
HanXRQChr17g0535991 Helianthus annuus HOM05D004869 ORTHO05D005893 0.0e+00 1283.9 828 74.3
Solyc01g066310.4 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1281.9 831 74.6
Sc19g0005490 Simmondsia chinensis HOM05D004869 ORTHO05D005893 0.0e+00 1279.6 786 77.1
Solyc05g054370.2 Solanum lycopersicum HOM05D004869 ORTHO05D005893 0.0e+00 1278.8 831 73.9
CsaV3_3G014880 Cucumis sativus L. HOM05D004869 ORTHO05D005893 0.0e+00 1277.7 831 73.9
Aqoxy5G00789 Aquilegia oxysepala HOM05D004869 ORTHO05D005893 0.0e+00 1277.3 834 74.8
Sopen05g032860 Solanum pennellii HOM05D004869 ORTHO05D005893 0.0e+00 1277.3 831 73.6
Migut.N00074 Erythranthe guttata HOM05D004869 ORTHO05D005893 0.0e+00 1276.5 834 74.2
PGSC0003DMG400023436 Solanum tuberosum HOM05D004869 ORTHO05D005893 0.0e+00 1275.4 831 73.6
Sed0001345 Sechium edule HOM05D004869 ORTHO05D005893 0.0e+00 1275.0 833 73.9
Hund20507 Selenicereus undatus HOM05D004869 ORTHO05D005893 0.0e+00 1270.8 835 73.7
ECA246G3101 Erigeron canadensis HOM05D004869 ORTHO05D005893 0.0e+00 1270.0 832 73.6
arahy.Tifrunner.gnm1.ann1.ZXWI6N Arachis hypogaea HOM05D004869 ORTHO05D005893 0.0e+00 1268.4 833 74.3
Lj6A681T39 Lonicera japonica HOM05D004869 ORTHO05D005893 0.0e+00 1265.8 831 74.5
Lalb_Chr20g0117401 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1265.8 833 73.8
Lalb_Chr15g0086081 Lupinus albus HOM05D004869 ORTHO05D005893 0.0e+00 1263.1 833 73.9
EL10Ac3g06663 Beta vulgaris HOM05D004869 ORTHO05D005893 0.0e+00 1260.4 817 74.5
Ca_01910_v3 Cicer arietinum L. HOM05D004869 ORTHO05D005893 0.0e+00 1258.0 820 74.3
Nitab4.5_0008670g0020 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1258.0 830 74.0
Nitab4.5_0000695g0140 Nicotiana tabacum HOM05D004869 ORTHO05D005893 0.0e+00 1251.1 828 73.6
PSO832G2232 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1248.8 837 72.8
CAN.G449.73 Capsicum annuum HOM05D004869 ORTHO05D005893 0.0e+00 1247.3 831 73.2
Lsat_1_v5_gn_3_21560 Lactuca sativa HOM05D004869 ORTHO05D005893 0.0e+00 1246.9 867 70.4
DCAR_027053 Daucus carota HOM05D004869 ORTHO05D005893 0.0e+00 1246.1 811 74.5
PSO210G1050 Papaver somniferum HOM05D004869 ORTHO05D005893 0.0e+00 1245.7 833 72.7
CDE11G0521 Ceratophyllum demersum HOM05D004869 ORTHO05D005893 0.0e+00 1240.3 835 71.7
Zm00001eb111400 Zea mays HOM05D004869 ORTHO05D005893 0.0e+00 1218.8 835 71.0
Nn3g21544 Nelumbo nucifera HOM05D004869 ORTHO05D005893 0.0e+00 1217.6 775 76.1
Os07g0675000 Oryza sativa ssp. japonica HOM05D004869 ORTHO05D005893 0.0e+00 1211.8 833 71.2
ATR0693G241 Amborella trichopoda HOM05D004869 ORTHO05D005893 0.0e+00 1208.0 829 70.9
Manes.03G198800 Manihot esculenta HOM05D004869 ORTHO05D005893 0.0e+00 1197.2 831 71.7
AUR62015247 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1180.2 834 69.3
AUR62018045 Chenopodium quinoa HOM05D004869 ORTHO05D005893 0.0e+00 1174.5 834 69.2
SGA_v2.0_scaffold119G32706 Striga asiatica HOM05D004869 ORTHO05D005893 0.0e+00 1168.3 843 68.3
TAR365G0733 Trochodendron aralioides HOM05D004869 ORTHO05D005893 0.0e+00 1155.2 839 69.0
Eucgr.B01578 Eucalyptus grandis HOM05D004869 ORTHO05D005893 0.0e+00 1135.9 722 74.2
HPP92_003120 Vanilla planifolia HOM05D004869 ORTHO05D005893 0.0e+00 1135.2 832 67.8
MBI18_g44774_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 0.0e+00 1118.6 802 69.3
Ah.04g153720 Amaranthus hybridus HOM05D004869 ORTHO05D005893 0.0e+00 1095.9 841 66.0
Pp3c18_21710 Physcomitrium patens HOM05D004869 ORTHO05D005893 7.3e-310 1067.0 830 63.4
Pp3c22_4180 Physcomitrium patens HOM05D004869 ORTHO05D005893 1.8e-308 1062.4 833 63.5
SMO202G0033 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 4.0e-308 1061.2 829 62.8
Haze_01165 Corylus avellana HOM05D004869 ORTHO05D005893 3.0e-303 1045.0 847 64.3
arahy.Tifrunner.gnm1.ann1.YH0B1H Arachis hypogaea HOM05D004869 ORTHO05D005893 9.0e-300 1033.5 824 65.0
Mapoly0111s0015 Marchantia polymorpha HOM05D004869 ORTHO05D005893 2.0e-291 1005.7 823 59.4
SMO169G0300 Selaginella moellendorffii HOM05D004869 ORTHO05D005893 7.9e-272 940.6 833 57.9
TPR.G26039 Trifolium pratense HOM05D004869 ORTHO05D005893 1.4e-257 893.3 588 71.4
AagrBONN_evm.TU.Sc2ySwM_228.2629 Anthoceros agrestis HOM05D004869 ORTHO05D005893 3.6e-256 888.6 716 60.6
CBR_g54445 Chara braunii HOM05D004869 ORTHO05D005893 2.2e-250 869.4 939 50.4
SHI00220 Sapria himalayana HOM05D004869 ORTHO05D005893 2.6e-243 845.9 616 66.4
Medtr2g435800 Medicago truncatula HOM05D004869 ORTHO05D005893 1.1e-233 813.9 570 68.6
Psat1g156400 Pisum sativum HOM05D004869 ORTHO05D005893 2.6e-230 802.7 562 68.9
BcaNung06666 Brassica carinata HOM05D004869 ORTHO05D005893 4.5e-219 765.4 493 77.5
unitig_26.g10563 Utricularia gibba HOM05D004869 ORTHO05D005893 1.2e-214 750.7 490 74.7
Cre16.g675850 Chlamydomonas reinhardtii HOM05D004869 ORTHO05D005893 1.5e-214 750.4 953 45.9
CSS0035117 Camellia sinensis var. sinensis HOM05D004869 ORTHO05D005893 2.0e-214 750.0 460 78.7
DCAR_000477 Daucus carota HOM05D004869 ORTHO05D005893 4.4e-214 748.8 486 74.3
PRCOL_00002960 Prasinoderma coloniale HOM05D004869 ORTHO05D005893 3.4e-182 642.9 799 44.8
Hma1.2p1_0804F.1_g221110 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 7.1e-164 582.0 381 71.4
BcaC05g30559 Brassica carinata HOM05D004869 ORTHO05D005893 1.2e-158 564.7 624 51.6
Oeu031983.1 Olea europaea HOM05D004869 ORTHO05D005893 6.7e-146 522.3 428 62.1
MCO01G041 Micromonas commoda HOM05D004869 ORTHO05D005893 1.5e-134 484.6 427 58.5
MBI18_g37159_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 6.7e-130 469.2 425 62.4
DCAR_023301 Daucus carota HOM05D004869 ORTHO05D005893 4.1e-119 433.3 300 67.7
Cfa024444 Carpinus fangiana HOM05D004869 ORTHO05D005893 3.4e-105 387.1 426 47.7
Medtr2g436030 Medicago truncatula HOM05D004869 ORTHO05D005893 3.2e-103 380.6 223 85.7
Cfa022681 Carpinus fangiana HOM05D004869 ORTHO05D005893 7.3e-100 369.4 426 45.3
QL06p007479 Quercus lobata HOM05D004869 ORTHO05D005893 8.3e-96 355.9 233 74.7
Nn1g04010 Nelumbo nucifera HOM05D004869 ORTHO05D005893 4.1e-87 327.0 190 83.2
Rhsim04G0225600 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.7e-80 305.1 322 53.1
TPR.G13211 Trifolium pratense HOM05D004869 ORTHO05D005893 2.7e-78 297.7 170 90.6
SEGI_30643 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.6e-67 261.9 183 67.2
unitig_26.g10564 Utricularia gibba HOM05D004869 ORTHO05D005893 2.7e-62 244.6 250 48.4
QL93p0200_0027 Quercus lobata HOM05D004869 ORTHO05D005893 6.4e-56 223.4 157 72.0
MCO01G771 Micromonas commoda HOM05D004869 ORTHO05D005893 6.2e-51 206.8 367 36.8
Rhsim04G0225700 Rhododendron simsii HOM05D004869 ORTHO05D005893 5.8e-49 200.3 133 77.4
RcHm_v2.0_Chr3g0480631 Rosa chinensis HOM05D004869 ORTHO05D005893 1.6e-46 192.2 123 74.0
Lsat_1_v5_gn_3_21640 Lactuca sativa HOM05D004869 ORTHO05D005893 1.3e-45 189.1 138 76.1
Rhsim04G0226200 Rhododendron simsii HOM05D004869 ORTHO05D005893 1.4e-42 179.1 150 65.3
RcHm_v2.0_Chr6g0311831 Rosa chinensis HOM05D004869 ORTHO05D005893 1.1e-34 152.9 114 65.8
SEGI_32872 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 1.8e-29 135.6 89 76.4
HanXRQChr01g0024801 Helianthus annuus HOM05D004869 ORTHO05D005893 2.8e-27 128.3 180 38.3
Lsat_1_v5_gn_5_23780 Lactuca sativa HOM05D004869 ORTHO05D005893 1.1e-26 126.3 167 43.1
SalBow5G3485 Salvia bowleyana HOM05D004869 ORTHO05D005893 1.8e-26 125.6 75 86.7
TPR.G25902 Trifolium pratense HOM05D000002 ORTHO05D000001 1.3e-24 119.4 73 72.6
MBI18_g46557_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 8.5e-24 116.7 93 62.4
Haze_26447 Corylus avellana HOM05D001528 ORTHO05D006464 1.1e-23 116.3 408 27.9
MBI18_g23297_MAGBIO Magnolia biondii HOM05D004869 ORTHO05D005893 1.9e-23 115.5 93 62.4
BNapus_Darmor_BZH_scaffold_117p00100 Brassica napus HOM05D004869 ORTHO05D005893 5.5e-23 114.0 73 83.6
SMO367G1086 Selaginella moellendorffii HOM05D001528 ORTHO05D006464 1.6e-22 112.5 287 30.3
BolC1t05585H Brassica oleracea HOM05D004869 ORTHO05D005893 1.0e-21 109.8 65 90.8
PGSC0003DMG400027831 Solanum tuberosum HOM05D004869 ORTHO05D005893 3.0e-21 108.2 59 91.5
AagrBONN_evm.TU.Sc2ySwM_117.3343 Anthoceros agrestis HOM05D001528 ORTHO05D006464 3.9e-21 107.8 269 30.9
PGSC0003DMG400026901 Solanum tuberosum HOM05D001528 ORTHO05D006464 2.0e-20 105.5 317 28.4
SEGI_25692 Sequoiadendron giganteum HOM05D004869 ORTHO05D005893 7.4e-20 103.6 97 50.5
Pp3c3_14940 Physcomitrium patens HOM05D001528 ORTHO05D006464 2.8e-19 101.7 279 29.0
TPR.G15436 Trifolium pratense HOM05D004869 ORTHO05D005893 4.8e-19 100.9 75 64.0
PRCOL_00006365 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 6.3e-19 100.5 331 27.2
CAN.G65.194 Capsicum annuum HOM05D001528 ORTHO05D006464 1.4e-18 99.4 317 27.4
Prupe.6G097600 Prunus persica HOM05D001528 ORTHO05D006464 1.8e-18 99.0 334 25.4
Gohir.A09G106300 Gossypium hirsutum HOM05D001528 ORTHO05D006464 2.4e-18 98.6 341 25.8
Mapoly0154s0036 Marchantia polymorpha HOM05D001528 ORTHO05D006464 3.1e-18 98.2 284 30.6
MD03G1116100 Malus domestica HOM05D001528 ORTHO05D006464 7.0e-18 97.1 334 25.4
BcaC09g47921 Brassica carinata HOM05D004869 ORTHO05D005893 2.6e-17 95.1 57 89.5
Aqoxy4G03235 Aquilegia oxysepala HOM05D001528 ORTHO05D006464 3.5e-17 94.7 402 23.6
Lsat_1_v5_gn_4_34540 Lactuca sativa HOM05D004869 ORTHO05D005893 4.5e-17 94.4 197 35.0
Cre06.g296400 Chlamydomonas reinhardtii HOM05D001528 ORTHO05D006464 1.7e-16 92.4 321 25.5
Cfa026122 Carpinus fangiana HOM05D001528 ORTHO05D006464 3.8e-16 91.3 287 26.5
PRCOL_00001565 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 3.8e-16 91.3 285 28.4
Lalb_Chr01g0004201 Lupinus albus HOM05D001528 ORTHO05D006464 6.5e-16 90.5 334 25.1
HanXRQChr14g0453001 Helianthus annuus HOM05D001528 ORTHO05D006464 2.1e-14 85.5 331 24.8
Medtr0837s0010 Medicago truncatula HOM05D001528 ORTHO05D006464 8.0e-14 83.6 284 26.4
Cfa027299 Carpinus fangiana HOM05D001528 ORTHO05D006464 1.3e-11 76.3 421 22.8
PRCOL_00006254 Prasinoderma coloniale HOM05D001528 ORTHO05D006464 8.2e-11 73.6 295 24.4
MCO16G633 Micromonas commoda HOM05D001528 ORTHO05D006464 1.2e-09 69.7 289 23.9
Hma1.2p1_1662F.1_g296280 Hydrangea macrophylla HOM05D004869 ORTHO05D005893 7.7e-09 67.0 53 58.5
Medtr2057s0010 Medicago truncatula HOM05D001528 ORTHO05D265507 2.5e-07 62.0 161 28.0


User provided reference genes

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