Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1832.4 899 100.0
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1570.4 896 86.4
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1539.2 943 80.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1508.0 897 83.4
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1454.9 897 80.9
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1212.6 898 68.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1197.6 900 67.0
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1194.1 894 66.2
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1184.1 894 66.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1170.6 944 64.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1157.1 974 62.1
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1154.4 905 65.9
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1154.0 897 65.4
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1152.5 942 63.2
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 0.0e+00 1143.6 745 73.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1142.9 904 64.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1137.1 887 65.7
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1135.2 921 63.8
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 0.0e+00 1135.2 1025 57.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1127.1 891 65.3
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1118.2 921 63.3
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1114.8 906 63.1
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1110.9 887 64.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1101.7 921 60.8
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1093.2 904 61.1
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1092.4 903 61.4
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 0.0e+00 1081.2 894 61.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 0.0e+00 1079.3 904 60.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1075.8 672 80.8
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.9e-309 1064.7 896 60.6
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.0e-308 1062.4 897 60.1
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 2.0e-308 1062.4 893 61.0
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.7e-307 1059.3 892 61.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 8.2e-307 1057.0 893 60.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.8e-306 1055.8 906 60.2
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.1e-303 1046.6 911 58.7
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 7.2e-303 1043.9 914 59.8
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 4.7e-302 1041.2 898 59.0
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 1.0e-301 1040.0 887 59.0
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 3.0e-301 1038.5 891 59.0
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.4e-300 1034.6 889 59.7
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.4e-298 1029.6 908 58.9
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.8e-298 1029.2 903 57.5
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 4.1e-298 1028.1 917 57.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 5.3e-298 1027.7 897 59.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 7.0e-298 1027.3 899 58.8
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 2.0e-297 1025.8 888 58.2
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 4.5e-297 1024.6 925 58.5
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.2e-295 1018.1 891 61.1
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.2e-295 1017.3 937 56.2
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.1e-294 1015.8 936 57.1
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.1e-294 1015.8 937 56.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.8e-293 1012.7 893 58.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 4.1e-290 1001.5 753 64.3
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.7e-289 997.3 954 55.2
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 7.7e-289 997.3 904 57.6
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 2.2e-288 995.7 895 57.8
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 5.0e-288 994.6 896 59.0
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.6e-286 988.4 921 55.6
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 1.4e-285 986.5 869 59.8
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.8e-285 986.1 900 58.8
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 2.3e-285 985.7 881 58.7
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.5e-284 983.0 896 55.6
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.5e-284 983.0 687 69.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 7.5e-284 980.7 907 55.9
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 9.8e-284 980.3 899 57.8
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 8.3e-283 977.2 752 64.9
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 7.0e-282 974.2 887 56.6
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 2.7e-281 972.2 874 58.7
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 1.5e-279 966.5 851 58.6
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 2.8e-278 962.2 916 55.6
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 4.7e-278 961.4 748 64.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 8.0e-278 960.7 748 64.6
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 5.2e-277 958.0 764 63.1
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 1.5e-276 956.4 748 64.0
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.5e-276 956.4 931 55.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 5.4e-274 948.0 897 56.1
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.5e-271 939.9 751 64.8
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 6.8e-269 931.0 784 61.0
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.5e-268 929.9 932 53.0
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 8.6e-264 914.1 891 54.3
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 3.3e-263 912.1 905 52.5
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 6.2e-262 907.9 900 52.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 9.8e-260 900.6 891 52.4
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.1e-245 852.4 900 49.7
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.2e-243 846.3 529 76.4
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 2.8e-238 829.3 702 60.5
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 1.5e-231 807.0 761 56.5
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 2.0e-228 796.6 570 67.4
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 3.4e-228 795.8 460 82.4
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.1e-221 774.2 554 68.2
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.1e-221 774.2 907 47.3
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.4e-221 773.9 669 61.9
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.2e-217 760.8 723 57.1
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.3e-207 725.7 484 74.6
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 2.6e-191 673.3 1079 38.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 9.1e-189 664.8 961 41.2
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.3e-184 650.2 803 43.2
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-177 627.5 904 41.0
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 8.8e-168 595.1 603 51.9
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.8e-163 579.7 957 38.7
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-162 578.2 724 44.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.7e-158 564.3 766 42.6
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-151 541.6 451 63.2
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.2e-151 541.6 451 63.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-145 520.8 761 41.4
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 6.0e-140 502.7 280 83.9
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 6.6e-139 499.2 313 74.1
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-135 488.0 484 51.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-134 483.8 757 38.3
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-131 474.9 681 42.4
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 2.9e-126 457.2 360 63.9
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 5.4e-125 453.0 408 56.9
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.5e-122 444.9 541 49.7
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.6e-122 443.0 626 42.7
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.3e-110 405.2 319 65.2
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.3e-99 368.6 767 33.8
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 3.0e-99 367.5 365 52.3
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 3.9e-99 367.1 450 48.0
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-90 338.6 624 36.5
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-88 329.7 707 33.1
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 2.3e-83 314.7 404 42.6
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 6.9e-80 303.1 642 32.1
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 2.5e-77 294.7 413 43.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 4.2e-77 293.9 337 49.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 6.3e-73 280.0 160 78.1
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.0e-67 260.8 139 84.9
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 3.3e-66 257.7 270 50.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.1e-56 224.6 381 37.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.9e-53 215.3 194 54.1
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-51 209.1 164 65.2
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 4.4e-50 204.1 109 87.2
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-48 199.5 205 55.6
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.0e-47 195.3 458 31.4
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.8e-46 191.0 159 56.0
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.1e-44 183.7 152 64.5
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.0e-43 183.0 510 29.8
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 6.8e-43 180.3 344 34.3
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.6e-42 178.3 129 68.2
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-39 168.3 105 77.1
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 7.3e-37 160.2 281 33.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 1.0e-30 139.8 89 71.9
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 3.3e-29 134.8 128 57.8
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 3.6e-28 131.3 86 69.8
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 4.7e-28 131.0 84 73.8
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.2e-28 130.6 604 26.3
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.4e-25 120.6 207 41.1
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 4.1e-24 117.9 83 74.7
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.4e-24 117.5 180 46.7
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 1.2e-20 106.3 109 50.5
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.6e-20 105.9 84 61.9
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 5.6e-13 80.9 58 63.8
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 4.4e-10 71.2 77 49.4
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-07 61.6 71 47.9
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 8.7e-06 57.0 121 35.5


User provided reference genes

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