Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.0e-99 365.2 184 100.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 5.4e-96 354.4 184 95.7
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.7e-94 349.4 184 94.6
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.5e-93 343.6 182 92.9
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 9.5e-93 343.6 182 92.9
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.2e-92 343.2 182 92.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.2e-92 343.2 184 91.3
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.7e-92 341.3 184 90.8
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 7.5e-90 334.0 184 90.8
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.8e-90 333.6 184 89.7
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 8.3e-89 330.5 184 88.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.2e-88 328.6 184 88.0
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 1.9e-85 319.3 184 83.2
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 3.3e-85 318.5 184 82.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 9.5e-85 317.0 184 82.6
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.2e-84 314.3 184 81.5
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 6.2e-84 314.3 184 82.1
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 81.5
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.1e-83 313.5 184 81.5
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 82.6
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 6.8e-83 310.8 184 82.6
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 82.1
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 82.1
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 82.1
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 7.5e-82 307.4 184 81.5
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.5e-82 307.4 184 81.5
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 7.5e-82 307.4 184 81.5
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.3e-81 306.6 184 80.4
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 78.3
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 3.7e-81 305.1 178 82.6
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 6.4e-81 304.3 177 81.9
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 6.4e-81 304.3 177 81.9
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 79.9
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.1e-80 303.5 184 80.4
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-80 303.1 184 79.9
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.4e-80 303.1 184 78.8
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 2.4e-80 302.4 184 80.4
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.2e-80 302.0 184 78.8
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 5.4e-80 301.2 184 79.3
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 7.1e-80 300.8 184 80.4
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 7.1e-80 300.8 182 80.2
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.2e-79 300.1 184 79.9
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 1.2e-79 300.1 184 78.8
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 4.6e-79 298.1 184 78.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 4.6e-79 298.1 184 78.3
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 1.7e-78 296.2 184 76.6
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 3.0e-78 295.4 185 77.8
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.2
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.2
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 8.6e-78 293.9 184 77.2
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 8.6e-78 293.9 183 76.5
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 1.1e-77 293.5 180 78.3
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.9e-77 292.7 181 75.7
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 7.3e-77 290.8 182 77.5
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 9.5e-77 290.4 181 75.7
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 9.5e-77 290.4 184 77.2
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 77.7
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.2e-76 290.0 182 78.0
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 76.6
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 2.8e-76 288.9 184 74.5
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.8e-76 288.9 184 77.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.6e-76 288.5 184 75.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 6.2e-76 287.7 177 76.8
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 6.2e-76 287.7 182 75.8
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 8.1e-76 287.3 181 75.1
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 73.4
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 2.3e-75 285.8 184 73.9
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 5.2e-75 284.6 177 76.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 6.8e-75 284.3 184 73.9
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 6.8e-75 284.3 182 75.3
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 1.2e-74 283.5 182 76.4
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 1.5e-74 283.1 182 76.4
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 72.3
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 182 76.4
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.4e-74 282.0 184 73.4
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 4.4e-74 281.6 182 75.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 5.8e-74 281.2 178 74.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 75.3
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 7.6e-74 280.8 184 72.3
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 1.7e-73 279.6 176 75.0
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 2.2e-73 279.3 184 71.2
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 2.9e-73 278.9 184 71.7
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 8.3e-73 277.3 184 72.8
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 73.5
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.1e-72 276.9 182 69.2
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.1e-72 276.9 185 71.9
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.9e-72 276.2 182 74.2
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.4e-72 275.8 183 70.5
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.2e-72 275.4 184 72.8
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.4e-72 274.6 178 75.3
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.2e-71 273.5 180 72.8
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.6e-71 273.1 185 70.3
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 2.1e-71 272.7 185 70.8
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.7e-71 272.3 184 68.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 71.4
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 71.4
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 71.4
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.7e-71 272.3 182 72.5
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.5e-71 271.9 180 70.6
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.3e-70 270.0 184 67.9
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.7e-70 269.6 184 68.5
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 70.9
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.7e-70 269.6 187 70.6
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 70.9
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 70.9
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 3.0e-70 268.9 178 71.9
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.0e-70 268.9 184 68.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 8.6e-70 267.3 185 69.2
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 8.6e-70 267.3 178 69.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.5e-69 266.5 182 70.9
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 1.5e-69 266.5 178 73.0
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 1.5e-69 266.5 170 77.6
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.9e-69 266.2 183 71.0
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.5e-69 265.8 177 72.3
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 4.3e-69 265.0 193 68.4
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.2e-68 263.5 185 68.6
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 2.1e-68 262.7 179 68.2
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-67 260.4 184 68.5
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 1.8e-67 259.6 177 70.6
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 1.8e-67 259.6 178 69.7
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 7.6e-66 254.2 177 64.4
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.7e-65 253.1 179 68.2
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 1.6e-63 246.5 184 66.3
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 1.9e-61 239.6 177 66.1
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 4.3e-61 238.4 180 64.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 4.3e-61 238.4 179 64.8
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 8.1e-60 234.2 179 62.6
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 9.9e-58 227.3 186 58.6
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.9e-57 225.7 180 61.7
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 2.7e-55 219.2 165 67.9
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 6.0e-55 218.0 182 62.1
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 2.5e-53 212.6 176 60.8
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.6e-53 210.7 121 84.3
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.6e-52 209.9 179 58.1
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 2.7e-47 192.6 184 56.0
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.3e-46 190.3 114 76.3
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.4e-43 179.5 197 51.8
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 2.1e-39 166.4 179 44.7
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.5e-39 165.6 159 52.2
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.4e-27 127.1 109 60.6
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 6.9e-27 124.8 99 60.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.7e-25 120.2 76 78.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.8e-14 83.6 57 75.4
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 2.0e-13 80.1 164 28.7
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.8e-12 76.3 59 59.3
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 4.8e-12 75.5 55 61.8
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.2e-08 62.8 35 82.9


User provided reference genes

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