Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 2.6e-80 302.0 150 100.0
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 1.5e-67 259.6 150 86.7
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 6.2e-66 254.2 150 83.3
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.1e-65 251.9 150 83.3
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.1e-65 251.9 150 83.3
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.4e-64 248.4 150 82.7
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.2e-63 245.7 150 86.0
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 8.7e-36 154.1 155 58.1
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 9.0e-33 144.1 150 56.0
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 6.4e-31 137.9 153 51.0
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 4.2e-30 135.2 80 78.8
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.2e-29 133.7 81 75.3
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 1.6e-29 133.3 147 50.3
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 2.7e-29 132.5 88 71.6
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 6.0e-29 131.3 76 80.3
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 6.0e-29 131.3 76 78.9
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 6.0e-29 131.3 81 75.3
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 7.9e-29 131.0 75 77.3
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.3e-28 129.4 75 76.0
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 3.0e-28 129.0 77 76.6
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 3.9e-28 128.6 73 74.0
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 5.1e-28 128.3 72 76.4
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 5.1e-28 128.3 77 76.6
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 6.7e-28 127.9 73 74.0
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 8.7e-28 127.5 73 76.7
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 1.1e-27 127.1 72 77.8
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 1.1e-27 127.1 147 50.3
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 1.1e-27 127.1 77 75.3
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.1e-27 127.1 75 73.3
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 1.1e-27 127.1 148 48.6
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 1.1e-27 127.1 147 51.0
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 1.5e-27 126.7 155 47.1
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 1.5e-27 126.7 155 47.1
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 1.5e-27 126.7 155 47.1
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 1.5e-27 126.7 74 71.6
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 1.5e-27 126.7 82 67.1
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 2.5e-27 125.9 73 74.0
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 3.3e-27 125.6 156 47.4
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 3.3e-27 125.6 152 46.7
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 3.3e-27 125.6 79 70.9
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 4.3e-27 125.2 149 49.7
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 4.3e-27 125.2 155 47.1
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 4.3e-27 125.2 78 78.2
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 7.4e-27 124.4 155 47.1
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 7.4e-27 124.4 77 77.9
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 9.6e-27 124.0 155 46.5
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.6e-27 124.0 78 76.9
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.3e-26 123.6 82 64.6
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 1.3e-26 123.6 149 49.7
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-26 123.2 82 64.6
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-26 123.2 82 64.6
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 1.6e-26 123.2 82 64.6
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 2.8e-26 122.5 77 72.7
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.7e-26 122.1 70 80.0
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 4.8e-26 121.7 74 70.3
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.8e-26 121.7 131 52.7
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 6.2e-26 121.3 111 58.6
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 8.2e-26 120.9 73 68.5
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.1e-25 120.6 146 46.6
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.8e-25 119.8 131 49.6
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 2.4e-25 119.4 130 50.0
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 6.9e-25 117.9 72 72.2
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 6.9e-25 117.9 69 73.9
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 6.9e-25 117.9 69 73.9
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 6.9e-25 117.9 69 73.9
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 9.0e-25 117.5 92 58.7
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.0e-24 116.3 146 46.6
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 2.0e-24 116.3 146 46.6
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 4.5e-24 115.2 130 49.2
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 4.5e-24 115.2 74 67.6
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.3e-23 113.6 91 58.2
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 8.4e-23 110.9 72 68.1
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 1.9e-22 109.8 98 52.0
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 5.5e-22 108.2 72 65.3
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 7.9e-21 104.4 97 50.5
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 7.9e-21 104.4 97 50.5
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 1.8e-20 103.2 71 63.4
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 100 51.0
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 73 58.9
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 1.5e-19 100.1 63 71.4
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 1.9e-19 99.8 75 61.3
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 5.7e-19 98.2 57 71.9
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 9.7e-19 97.4 53 83.0
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 1.6e-18 96.7 68 64.7
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 1.6e-18 96.7 68 64.7
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 1.6e-18 96.7 68 64.7
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 1.6e-18 96.7 68 64.7
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 1.6e-18 96.7 68 64.7
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 6.3e-18 94.7 74 60.8
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 5.3e-17 91.7 55 70.9
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 5.3e-17 91.7 85 51.8
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.5e-16 90.1 81 54.3
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 2.0e-16 89.7 61 63.9
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.6e-16 89.4 73 56.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 7.6e-16 87.8 129 42.6
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.6e-16 87.8 129 42.6
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 7.6e-16 87.8 129 42.6
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 7.6e-16 87.8 56 69.6
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.0e-15 87.4 54 66.7
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 2.5e-14 82.8 77 48.1
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.6e-13 78.6 78 51.3
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.0e-12 77.4 77 49.4
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 1.4e-12 77.0 64 53.1
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.3e-12 76.3 76 52.6
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 6.7e-12 74.7 64 54.7
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 6.7e-12 74.7 64 54.7
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 1.1e-11 73.9 91 44.0
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 2.5e-11 72.8 59 50.8
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 1.3e-10 70.5 41 70.7
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 8.2e-10 67.8 76 43.4
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.4e-09 66.2 75 48.0
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 2.4e-09 66.2 37 73.0
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 6.9e-09 64.7 76 42.1
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.5e-08 63.5 76 44.7
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.6e-08 62.8 79 45.6
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.5e-08 62.0 35 71.4
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.5e-08 62.0 35 71.4
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 4.5e-08 62.0 35 71.4
Nitab4.5_0011882g0040 Nicotiana tabacum HOM05D002824 ORTHO05D007162 7.7e-08 61.2 38 68.4
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.9e-07 59.3 39 69.2
MELO3C027952.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.1e-06 57.4 59 50.8
Nitab4.5_0020737g0030 Nicotiana tabacum HOM05D002824 ORTHO05D007162 1.9e-06 56.6 30 76.7
COL.COLO4_02277 Corchorus olitorius HOM05D002824 ORTHO05D008771 2.5e-06 56.2 41 61.0
Nitab4.5_0002229g0270 Nicotiana tabacum HOM05D002824 ORTHO05D008771 2.5e-06 56.2 28 78.6
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 3.2e-06 55.8 36 66.7


User provided reference genes

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