Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 2179.1 1114 100.0
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1713.0 1117 80.1
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1699.1 1117 79.8
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1680.2 1116 78.8
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1625.5 1053 81.3
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1502.3 1125 70.7
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1484.2 1125 69.2
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1483.8 1125 69.2
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1453.0 1129 67.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1450.6 1121 68.7
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1433.3 1209 65.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1405.2 1134 66.7
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1397.9 1106 67.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1392.1 1015 71.0
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1385.2 1100 67.6
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1376.7 1128 66.3
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1373.6 1164 64.0
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1367.4 1156 63.8
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1355.5 1185 63.3
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1343.9 1098 66.9
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1330.1 1163 62.3
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1320.1 1101 63.2
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1317.4 1097 65.9
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1303.5 1111 62.6
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1302.7 1104 65.2
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1300.8 1104 65.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1299.6 1119 62.6
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1297.7 1117 62.7
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1295.8 924 72.3
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1294.3 1125 62.7
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1293.9 1114 63.6
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1290.8 1110 63.2
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1283.9 1110 63.1
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1283.9 1107 62.1
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1281.9 1121 63.4
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1278.8 1147 61.0
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1277.7 1116 61.5
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1276.5 1181 58.5
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1270.4 1155 60.4
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1267.3 1082 62.8
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1266.5 1026 64.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1264.6 1002 65.2
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1264.2 1170 60.0
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1263.4 1118 62.2
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1261.5 1158 59.8
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1256.1 1117 62.1
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1255.7 987 66.5
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1250.3 1181 58.9
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 1130 61.1
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1247.6 1036 63.7
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1245.0 843 75.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1244.2 908 70.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 1182 58.0
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1242.3 1078 61.9
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1234.9 1054 62.7
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1229.5 1078 63.1
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1225.3 884 70.7
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1209.9 1110 62.0
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1208.7 984 64.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1204.5 1173 59.0
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1203.7 1209 56.3
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1201.4 874 71.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1200.7 1150 57.7
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1195.6 1155 58.1
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1195.3 934 68.0
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1193.7 1151 57.9
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1187.6 1163 57.0
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1182.9 1256 55.1
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1182.2 881 70.1
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1145.2 1178 55.9
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1142.9 1172 55.3
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1139.0 886 65.6
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1135.2 1205 54.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1129.4 818 71.6
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1110.1 835 70.5
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 0.0e+00 1109.0 1182 55.0
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 0.0e+00 1081.6 1005 59.5
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 0.0e+00 1080.9 1001 59.8
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.8e-311 1071.6 990 60.9
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.1e-303 1047.0 860 65.8
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 4.0e-303 1045.0 1097 56.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.2e-299 1033.5 781 68.0
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.9e-297 1026.2 1039 54.2
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 3.0e-290 1002.3 787 66.8
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.1e-275 953.0 796 66.3
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 2.1e-267 926.4 1105 48.5
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 7.9e-259 897.9 1120 48.3
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 4.1e-255 885.6 1066 46.8
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 2.6e-254 882.9 660 68.2
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.7e-253 880.2 660 68.0
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.2e-253 879.8 941 51.4
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.1e-250 868.6 991 49.5
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 9.7e-249 864.4 872 53.0
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 5.0e-245 852.0 597 73.2
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-241 839.3 876 52.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 4.5e-230 802.4 598 70.9
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.0e-226 791.2 583 68.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 9.4e-220 768.1 1064 46.1
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.0e-218 763.1 713 60.6
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.1e-199 701.4 720 56.1
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.6e-195 686.4 499 69.1
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.9e-176 623.6 476 69.3
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-166 591.3 417 72.2
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.4e-154 550.8 389 73.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.5e-145 521.5 708 44.5
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.7e-141 505.8 722 41.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 2.6e-137 494.2 421 63.4
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 9.1e-130 469.2 433 60.5
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 7.2e-127 459.5 376 64.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.7e-116 422.5 362 65.2
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.5e-87 328.9 375 46.7
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.4e-76 290.8 286 60.1
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.8e-69 266.9 518 36.3
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 2.0e-68 265.4 227 60.8
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 3.2e-66 258.1 263 58.9
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 2.5e-63 248.4 344 45.3
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.8e-62 245.0 711 30.0
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.3e-59 236.1 233 53.6
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-57 229.2 167 66.5
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 4.3e-55 221.1 165 70.9
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.2e-49 203.0 257 43.6
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 3.9e-48 198.0 178 60.7
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 7.3e-47 193.7 177 57.6
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 9.6e-47 193.4 724 26.7
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.8e-46 191.8 658 28.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 6.9e-45 187.2 770 26.4
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.2e-44 186.4 725 26.6
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.5e-44 186.0 240 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.4e-44 184.9 891 25.1
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 8.4e-43 180.3 188 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.2e-42 178.3 742 25.6
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-40 172.6 249 43.8
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.0e-40 171.8 171 53.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.3e-38 166.4 113 75.2
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 8.1e-38 163.7 132 64.4
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 1.2e-36 159.8 143 55.9
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.9e-33 147.1 108 70.4
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.7e-32 143.7 157 49.0
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.5e-31 142.9 832 23.9
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.3e-30 139.8 787 25.2
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.1e-29 134.8 120 57.5
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.0e-27 127.9 137 50.4
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.4e-26 126.3 757 24.4
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.1e-25 122.5 479 26.7
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 3.9e-24 118.2 129 52.7
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 3.9e-24 118.2 114 57.9
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 7.4e-23 114.0 82 67.1
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 4.8e-22 111.3 73 74.0
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.4e-21 109.0 272 33.8
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.0e-19 103.6 69 78.3
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 8.5e-19 100.5 292 27.7
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 7.2e-18 97.4 258 28.3
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 6.1e-17 94.4 694 25.1
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 8.8e-16 90.5 111 46.8
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.1e-13 82.0 434 24.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-11 77.0 91 46.2
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.5e-10 72.4 101 43.6
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 7.2e-10 70.9 223 30.9
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 7.9e-09 67.4 75 44.0
CBR_g26524 Chara braunii HOM05D002705 ORTHO05D004955 9.7e-07 60.5 175 29.7
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 3.7e-06 58.5 183 30.6


User provided reference genes

Program Settings