Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 0.0e+00 1175.6 602 100.0
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 0.0e+00 1132.9 602 95.5
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 0.0e+00 1109.4 600 93.3
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 0.0e+00 1105.1 606 92.7
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 0.0e+00 1104.7 614 91.5
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 5.3e-310 1067.0 622 89.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 8.2e-303 1043.1 602 88.7
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.2e-298 1029.2 602 87.7
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.1e-294 1016.1 602 85.4
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.8e-294 1015.4 602 86.5
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 1.6e-293 1012.3 626 83.9
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 2.0e-293 1011.9 600 85.7
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.0e-292 1009.6 592 87.2
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 5.0e-292 1007.3 593 85.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.5e-291 1005.0 602 84.4
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.6e-290 1001.1 603 84.7
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 3.6e-290 1001.1 601 84.4
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.1e-290 1000.3 594 85.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 8.0e-290 1000.0 601 84.5
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.6e-288 995.0 602 83.1
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 5.7e-288 993.8 601 82.9
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 1.4e-286 989.2 650 78.8
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 3.5e-285 984.6 600 82.7
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.0e-284 983.0 603 82.4
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.3e-284 982.6 569 87.7
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.5e-283 978.4 603 82.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.2e-283 977.6 603 81.3
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 1.6e-282 975.7 592 83.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.1e-282 973.8 600 82.5
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 2.3e-281 971.8 598 81.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 6.8e-281 970.3 603 81.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.6e-280 968.4 603 82.3
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 1.3e-279 966.1 592 82.9
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.7e-279 965.7 602 81.9
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 2.8e-279 964.9 683 74.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 3.7e-279 964.5 603 81.1
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 6.3e-279 963.8 603 81.9
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.8e-278 962.2 592 82.4
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 7.0e-278 960.3 592 82.4
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.5e-277 957.6 603 79.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 5.9e-277 957.2 602 81.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.7e-277 956.8 593 81.6
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 1.3e-276 956.1 600 80.7
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.3e-276 956.1 601 80.7
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 3.8e-276 954.5 592 82.1
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 5.0e-276 954.1 601 80.7
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 5.0e-276 954.1 601 80.9
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 5.0e-276 954.1 601 80.5
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 8.6e-276 953.4 603 78.9
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 8.6e-276 953.4 598 80.6
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.1e-275 953.0 603 80.9
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 1.9e-275 952.2 598 79.8
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-275 952.2 599 81.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.3e-275 951.4 601 80.5
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 9.5e-275 949.9 603 80.3
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.6e-274 949.1 603 79.9
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.8e-274 948.3 608 80.1
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 2.8e-274 948.3 603 78.6
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 4.7e-274 947.6 597 81.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 1.8e-273 945.7 598 80.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.8e-273 945.7 600 79.5
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 3.0e-273 944.9 603 79.3
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 3.0e-273 944.9 599 81.0
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 5.2e-273 944.1 599 79.6
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 6.8e-273 943.7 598 79.4
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 6.8e-273 943.7 578 82.4
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 1.5e-272 942.6 594 79.8
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.5e-272 942.6 598 79.3
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.5e-272 942.6 603 78.9
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 2.6e-272 941.8 598 79.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.4e-272 941.0 659 74.5
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 7.5e-272 940.3 598 79.3
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 7.5e-272 940.3 598 79.3
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 7.5e-272 940.3 598 79.3
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 2.8e-271 938.3 600 79.2
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 3.7e-271 937.9 603 78.4
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 4.9e-271 937.6 603 78.4
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 6.3e-271 937.2 602 78.6
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 8.3e-271 936.8 603 79.3
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 9.2e-270 933.3 596 79.2
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 9.2e-270 933.3 604 79.3
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 9.2e-270 933.3 603 77.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.2e-269 932.9 603 77.9
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.6e-268 927.2 622 76.4
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 1.5e-267 926.0 594 78.5
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 5.6e-267 924.1 598 78.4
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 5.6e-267 924.1 600 79.0
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.2e-266 922.9 595 78.0
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 4.7e-266 921.0 570 81.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 7.0e-262 907.1 591 79.5
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 1.6e-261 906.0 623 75.8
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.0e-261 905.6 599 77.0
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.7e-260 902.5 597 76.5
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 2.3e-260 902.1 596 77.0
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.1e-259 899.8 546 81.9
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 2.8e-258 895.2 602 74.3
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 1.1e-257 893.3 550 82.9
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 5.8e-256 887.5 598 77.9
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 9.8e-256 886.7 563 79.2
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.3e-255 886.3 570 80.7
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 6.0e-253 877.5 600 76.3
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.0e-252 876.7 600 73.5
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 1.7e-252 875.9 600 73.5
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.5e-248 862.8 593 76.2
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.7e-247 859.4 593 75.9
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 4.3e-243 844.7 640 69.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 6.8e-241 837.4 615 71.1
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 8.1e-234 813.9 504 80.8
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 5.8e-232 807.7 479 85.4
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 6.4e-231 804.3 657 63.8
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 1.4e-230 803.1 600 69.0
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 6.0e-229 797.7 494 81.0
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.8e-225 786.2 601 67.6
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 4.5e-224 781.6 598 66.6
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 2.9e-223 778.9 470 83.2
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 2.5e-219 765.8 601 65.1
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 1.0e-207 727.2 552 70.8
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 8.5e-199 697.6 427 82.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.2e-198 695.7 504 72.0
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.1e-195 687.2 442 78.7
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.6e-179 632.9 607 54.4
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 8.5e-175 617.8 600 53.5
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 7.5e-171 604.7 570 54.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 9.8e-163 577.8 436 67.0
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-154 549.3 367 77.4
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 4.6e-152 542.3 338 82.0
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.7e-143 513.8 417 63.8
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.0e-143 512.3 605 47.4
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.2e-137 493.0 521 55.5
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 1.1e-134 484.6 576 46.0
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.3e-134 483.0 314 77.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.8e-132 477.2 288 84.4
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 2.8e-117 426.8 248 83.5
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 6.2e-117 425.6 281 77.9
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.9e-110 404.1 441 52.6
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 4.5e-107 392.9 318 66.0
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.1e-95 352.8 273 67.4
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.5e-73 280.8 181 78.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.2e-72 278.5 687 31.3
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 2.8e-69 267.3 571 32.4
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 1.5e-65 255.0 153 81.7
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 8.2e-61 239.2 155 77.4
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 2.4e-60 237.7 154 78.6
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.4e-44 183.3 102 87.3
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.0e-43 181.4 120 77.5
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 3.3e-41 174.1 616 28.1
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 2.3e-34 151.4 96 77.1
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 1.2e-32 145.6 98 73.5
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.1e-31 142.5 120 56.7
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.4e-30 137.5 99 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 4.4e-30 137.1 186 42.5
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 3.0e-26 124.4 74 82.4
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.2e-24 116.7 66 84.8
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 8.9e-23 112.8 641 24.2
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 4.9e-21 107.1 67 68.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 2.7e-19 101.3 78 61.5
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 2.5e-17 94.7 95 58.9
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 2.8e-16 91.3 194 34.0
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 5.8e-14 83.6 49 79.6
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 5.8e-14 83.6 71 54.9
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 2.9e-13 81.3 48 79.2
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 4.1e-12 77.4 61 70.5
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-11 75.5 53 73.6
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-11 75.5 53 73.6
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 7.3e-09 66.6 54 66.7
COL.COLO4_03746 Corchorus olitorius HOM05D004329 ORTHO05D155270 4.0e-07 60.8 29 93.1


User provided reference genes

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