Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 5.1e-268 927.5 606 100.0
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.1e-225 786.9 595 83.5
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.7e-211 738.0 567 78.0
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 5.7e-211 738.0 567 78.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 8.2e-210 734.2 567 77.6
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 1.8e-209 733.0 502 82.7
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 3.7e-202 708.8 499 80.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.3e-196 689.5 499 80.8
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 4.4e-195 685.3 501 80.2
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 4.8e-194 681.8 501 80.6
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 5.5e-190 668.3 497 76.5
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 4.0e-188 662.1 501 78.4
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 1.4e-185 653.7 497 76.9
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.1e-182 644.0 501 75.0
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.8e-181 639.4 551 72.1
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 6.1e-181 638.3 502 75.5
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 4.0e-180 635.6 410 82.2
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 1.5e-179 633.6 498 73.9
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 2.0e-179 633.3 504 72.2
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 5.7e-179 631.7 505 76.0
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.3e-178 630.6 505 76.0
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.3e-178 630.6 599 74.5
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.8e-177 626.7 500 75.8
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 5.9e-176 621.7 502 74.9
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 6.6e-175 618.2 498 72.3
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.5e-174 617.1 497 75.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 4.3e-174 615.5 541 65.4
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 5.6e-174 615.1 491 74.7
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 9.5e-174 614.4 503 71.2
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.6e-173 613.6 499 66.7
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.1e-173 613.2 501 68.9
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.0e-172 610.9 498 74.5
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 4.0e-172 609.0 500 74.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 4.4e-171 605.5 502 72.9
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 9.8e-171 604.4 502 72.5
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 9.8e-171 604.4 504 71.2
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.3e-170 604.0 499 66.5
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.2e-170 603.2 494 68.8
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.1e-169 599.0 506 67.4
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 4.6e-168 595.5 499 70.9
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 7.8e-168 594.7 502 73.3
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 7.8e-168 594.7 491 73.9
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.0e-167 592.8 506 70.4
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 3.3e-166 589.3 485 71.1
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 9.5e-166 587.8 481 69.2
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.1e-165 586.6 480 73.3
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.8e-165 586.3 505 68.9
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 8.1e-165 584.7 503 66.6
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.1e-164 584.3 502 71.5
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.1e-164 582.8 512 67.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 8.9e-164 581.3 491 70.3
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.2e-163 580.9 407 76.2
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 1.2e-163 580.9 435 76.8
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.2e-162 576.6 504 70.8
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.4e-162 575.1 502 68.5
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 6.4e-162 575.1 391 78.8
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 1.4e-161 573.9 505 70.7
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.9e-161 573.5 501 71.9
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 2.4e-161 573.2 502 64.7
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 4.1e-161 572.4 502 65.9
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.1e-160 570.1 383 79.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.3e-159 567.4 472 70.8
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 2.5e-158 563.1 505 68.9
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.6e-157 560.5 478 72.6
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-157 560.5 502 69.7
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.8e-157 559.7 501 68.9
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 2.8e-157 559.7 611 56.5
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.1e-156 557.8 504 68.3
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 5.2e-156 555.4 497 66.8
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.2e-155 554.3 502 64.7
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 4.4e-155 552.4 482 66.6
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 3.7e-154 549.3 500 68.8
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.9e-154 548.9 423 72.1
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.6e-152 543.9 509 65.0
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 5.1e-151 538.9 501 68.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 6.6e-151 538.5 428 70.6
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.1e-150 537.7 406 72.7
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.9e-150 537.0 404 73.0
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 4.7e-149 532.3 408 71.6
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 6.8e-148 528.5 477 68.3
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 2.4e-145 520.0 477 67.9
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.2e-145 519.6 496 62.3
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 7.1e-145 518.5 373 74.5
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.2e-144 517.7 513 61.0
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 4.3e-142 509.2 373 82.3
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.6e-141 507.3 516 58.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.5e-139 500.7 504 63.5
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 3.2e-137 493.0 565 54.3
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.0e-135 488.0 428 63.6
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.0e-135 486.5 348 75.6
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 3.6e-133 479.6 524 60.7
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.7e-130 470.7 504 61.3
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 1.1e-129 468.0 507 60.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 7.1e-129 465.3 430 62.8
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 3.3e-126 456.4 425 62.4
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 3.7e-125 453.0 480 60.4
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.0e-123 447.2 420 63.3
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 6.5e-122 442.2 504 59.1
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.9e-121 440.7 500 59.2
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 3.2e-121 439.9 504 58.5
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 3.5e-120 436.4 505 58.6
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 3.5e-120 436.4 501 59.5
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 6.0e-120 435.6 453 63.1
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.0e-119 434.9 393 63.1
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 2.3e-119 433.7 506 58.3
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 6.3e-117 425.6 504 57.5
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 1.1e-116 424.9 398 60.6
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 7.2e-113 412.1 388 60.8
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 9.3e-113 411.8 478 58.4
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-107 393.3 235 87.7
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.0e-106 391.7 301 71.4
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.0e-106 391.7 301 71.4
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.5e-106 389.0 235 87.2
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.1e-105 388.3 317 79.8
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.1e-96 357.5 296 64.9
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 8.8e-95 352.1 353 56.9
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.7e-93 346.7 343 56.3
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-90 336.3 351 55.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 1.5e-89 334.7 341 57.2
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 8.2e-85 318.9 421 52.7
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.5e-78 298.1 390 49.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 1.5e-73 281.6 490 42.0
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 7.2e-73 279.3 473 43.8
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 2.0e-70 271.2 403 44.4
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 9.5e-65 252.3 272 69.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 1.3e-58 231.9 358 44.7
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.6e-56 223.8 491 41.1
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 8.9e-55 219.2 319 46.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.6e-48 198.4 172 63.4
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.7e-48 196.8 201 60.2
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-44 184.5 134 75.4
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 7.3e-41 172.9 103 80.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 4.7e-32 143.7 127 64.6
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 2.6e-30 137.9 137 73.0
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 4.9e-29 133.7 280 36.8
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 6.4e-29 133.3 260 38.1
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.1e-24 118.2 353 32.3
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 2.0e-22 111.7 284 31.0
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.1e-20 105.9 130 55.4
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 3.5e-19 100.9 89 56.2
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.0e-18 99.4 61 82.0
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.4e-15 89.0 53 75.5
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-12 78.2 90 56.7
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-12 78.2 41 90.2
Actinidia21317 Actinidia chinensis HOM05D004839 ORTHO05D006012 2.6e-06 58.2 39 69.2
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 1.0e-05 56.2 43 65.1
Cpa.g.sc94.29 Carica papaya HOM05D004839 ORTHO05D006012 1.0e-05 56.2 35 77.1


User provided reference genes

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