Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G023800 Theobroma cacao HOM05D007081 ORTHO05D008834 4.0e-265 917.5 468 100.0
Duzib205G1440 Durio zibethinus HOM05D007081 ORTHO05D008834 2.1e-189 666.0 527 71.7
Gorai.005G133700 Gossypium raimondii HOM05D007081 ORTHO05D008834 1.1e-182 643.7 474 75.9
Gohir.D02G120200 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.1e-181 639.4 474 75.3
QL10p008625 Quercus lobata HOM05D007081 ORTHO05D008834 3.7e-133 479.2 488 58.6
QL10p008493 Quercus lobata HOM05D007081 ORTHO05D008834 8.2e-133 478.0 488 58.4
Cfa019177 Carpinus fangiana HOM05D007081 ORTHO05D008834 1.1e-132 477.6 492 57.7
CANSAT80G0092 Cannabis sativa HOM05D007081 ORTHO05D008834 1.4e-129 467.2 491 56.2
COL.COLO4_30124 Corchorus olitorius HOM05D007081 ORTHO05D008834 2.5e-129 466.5 482 58.7
Haze_07555 Corylus avellana HOM05D007081 ORTHO05D008834 4.7e-128 462.2 479 57.4
TWI39G1151 Tripterygium wilfordii HOM05D007081 ORTHO05D008834 5.1e-127 458.8 492 56.9
GSVIVG01007682001 Vitis vinifera HOM05D007081 ORTHO05D008834 2.4e-124 449.9 494 55.5
TAR629G3400 Trochodendron aralioides HOM05D007081 ORTHO05D008834 3.8e-122 442.6 476 58.4
Dinv38554 Davidia involucrata HOM05D007081 ORTHO05D008834 1.5e-121 440.7 379 61.2
MD14G1175400 Malus domestica HOM05D007081 ORTHO05D008834 1.6e-120 437.2 467 56.3
Rhsim12G0166600 Rhododendron simsii HOM05D007081 ORTHO05D008834 1.5e-118 430.6 487 53.8
RcHm_v2.0_Chr7g0192971 Rosa chinensis HOM05D007081 ORTHO05D008834 1.3e-117 427.6 463 56.4
Manes.14G062600 Manihot esculenta HOM05D007081 ORTHO05D008834 3.7e-117 426.0 488 52.0
CiPaw.11G022400 Carya illinoinensis HOM05D007081 ORTHO05D008834 4.8e-117 425.6 493 51.3
FvH4_5g05850 Fragaria vesca HOM05D007081 ORTHO05D008834 3.1e-116 422.9 467 53.5
Ciclev10023760m.g Citrus clementina HOM05D007081 ORTHO05D008834 2.6e-115 419.9 491 53.8
PGR044G1978 Punica granatum HOM05D007081 ORTHO05D008834 3.5e-115 419.5 485 54.2
FAN08G1021 Fragaria x ananassa HOM05D007081 ORTHO05D008834 2.5e-113 413.3 466 53.2
Potri.002G197500 Populus trichocarpa HOM05D007081 ORTHO05D008834 4.7e-112 409.1 491 53.8
Sc04g0001640 Simmondsia chinensis HOM05D007081 ORTHO05D008834 1.0e-111 407.9 438 55.0
Lj5A128T65 Lonicera japonica HOM05D007081 ORTHO05D008834 3.0e-111 406.4 386 57.3
MBI10_g32034_MAGBIO Magnolia biondii HOM05D007081 ORTHO05D008834 7.5e-110 401.7 482 55.2
TPR.G31056 Trifolium pratense HOM05D007081 ORTHO05D008834 1.7e-109 400.6 506 50.4
Ca_16151_v3 Cicer arietinum L. HOM05D007081 ORTHO05D008834 1.4e-108 397.5 486 53.7
vmacro16631 Vaccinium macrocarpon HOM05D007081 ORTHO05D008834 2.7e-107 393.3 387 55.3
FAN18G1088 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.5e-107 392.5 510 48.6
Oeu040853.3 Olea europaea HOM05D007081 ORTHO05D008834 2.9e-106 389.8 537 45.3
arahy.Tifrunner.gnm1.ann1.4N1ELM Arachis hypogaea HOM05D007081 ORTHO05D008834 5.0e-106 389.0 506 50.0
Sed0005220 Sechium edule HOM05D007081 ORTHO05D008834 5.0e-106 389.0 526 45.6
PGSC0003DMG400018175 Solanum tuberosum HOM05D007081 ORTHO05D008834 3.2e-105 386.3 481 49.7
Phvul.009G175500 Phaseolus vulgaris HOM05D007081 ORTHO05D008834 7.2e-105 385.2 383 54.8
Lalb_Chr11g0070341 Lupinus albus HOM05D007081 ORTHO05D008834 1.2e-104 384.4 507 50.5
Sopen03g031570 Solanum pennellii HOM05D007081 ORTHO05D008834 1.6e-104 384.0 482 49.2
Cc04_g12600 Coffea canephora HOM05D007081 ORTHO05D008834 3.6e-104 382.9 491 49.9
Psat0s2597g0120 Pisum sativum HOM05D007081 ORTHO05D008834 3.6e-104 382.9 385 54.3
Lj1g0004270 Lotus japonicus HOM05D007081 ORTHO05D008834 4.7e-104 382.5 556 46.2
Solyc03g112510.2 Solanum lycopersicum HOM05D007081 ORTHO05D008834 4.7e-104 382.5 482 49.2
HanXRQChr04g0101311 Helianthus annuus HOM05D007081 ORTHO05D008834 1.0e-103 381.3 477 51.8
Eucgr.K02814 Eucalyptus grandis HOM05D007081 ORTHO05D008834 1.8e-103 380.6 486 48.8
Glyma.04G186500 Glycine max HOM05D007081 ORTHO05D008834 3.0e-103 379.8 511 48.3
Lsat_1_v5_gn_1_28080 Lactuca sativa HOM05D007081 ORTHO05D008834 6.8e-103 378.6 495 50.7
Peaxi162Scf00089g01519 Petunia axillaris HOM05D007081 ORTHO05D008834 8.8e-103 378.3 495 47.9
CAN.G338.9 Capsicum annuum HOM05D007081 ORTHO05D008834 1.7e-101 374.0 469 49.7
Gohir.A03G091750 Gossypium hirsutum HOM05D007081 ORTHO05D008834 2.2e-101 373.6 307 72.0
DCAR_016469 Daucus carota HOM05D007081 ORTHO05D008834 8.3e-101 371.7 447 53.2
Sabra02G0160000 Salix brachista HOM05D007081 ORTHO05D008834 1.4e-100 370.9 549 47.0
THA.LOC104809251 Tarenaya hassleriana HOM05D007081 ORTHO05D008834 3.1e-100 369.8 483 46.4
Thhalv10025133m.g Eutrema salsugineum HOM05D007081 ORTHO05D008834 1.2e-99 367.9 481 48.2
Migut.O00134 Erythranthe guttata HOM05D007081 ORTHO05D008834 2.7e-99 366.7 460 48.9
AL7G17230 Arabidopsis lyrata HOM05D007081 ORTHO05D008834 3.3e-97 359.8 533 43.9
Sp7g31890 Schrenkiella parvula HOM05D007081 ORTHO05D008834 4.2e-97 359.4 460 48.9
PSO063G2349 Papaver somniferum HOM05D007081 ORTHO05D008834 1.6e-96 357.5 480 49.2
Nitab4.5_0010304g0020 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.1e-96 357.1 479 48.0
ECA247G4072 Erigeron canadensis HOM05D007081 ORTHO05D008834 4.7e-96 355.9 467 50.3
AT4G34140 Arabidopsis thaliana HOM05D007081 ORTHO05D008834 6.1e-96 355.5 532 43.2
SGA_v2.0_scaffold90G27870 Striga asiatica HOM05D007081 ORTHO05D008834 1.0e-95 354.8 365 51.0
Aa31LG2G16580 Aethionema arabicum HOM05D007081 ORTHO05D008834 2.6e-94 350.1 495 42.6
Carub.0007s0626 Capsella rubella HOM05D007081 ORTHO05D008834 4.9e-93 345.9 528 43.9
Aqoxy3G02825 Aquilegia oxysepala HOM05D007081 ORTHO05D008834 1.1e-92 344.7 480 43.8
Medtr3g077300 Medicago truncatula HOM05D007081 ORTHO05D008834 1.1e-89 334.7 384 50.5
arahy.Tifrunner.gnm1.ann1.G5F0QK Arachis hypogaea HOM05D007081 ORTHO05D008834 5.6e-89 332.4 473 48.2
PSO832G3615 Papaver somniferum HOM05D007081 ORTHO05D008834 5.6e-89 332.4 480 47.3
Hund02770 Selenicereus undatus HOM05D007081 ORTHO05D008834 5.6e-89 332.4 496 46.0
ATR1152G054 Amborella trichopoda HOM05D007081 ORTHO05D008834 8.0e-88 328.6 503 46.1
C01p04690 Brassica napus HOM05D007081 ORTHO05D008834 8.9e-87 325.1 456 46.1
BraA01t00418Z Brassica rapa HOM05D007081 ORTHO05D008834 8.9e-87 325.1 348 50.0
BolC1t00453H Brassica oleracea HOM05D007081 ORTHO05D008834 1.5e-86 324.3 455 46.4
A01p04290 Brassica napus HOM05D007081 ORTHO05D008834 6.4e-85 318.9 344 49.7
FAN04G1276 Fragaria x ananassa HOM05D007081 ORTHO05D008834 4.6e-83 312.8 470 45.7
Cpa.g.sc35.77 Carica papaya HOM05D007081 ORTHO05D008834 6.6e-82 308.9 377 53.3
MELO3C026274.2 Cucumis melo HOM05D007081 ORTHO05D008834 1.1e-81 308.1 492 45.7
unitig_26.g9614 Utricularia gibba HOM05D007081 ORTHO05D008834 1.5e-81 307.8 457 44.6
CDE06G1300 Ceratophyllum demersum HOM05D007081 ORTHO05D008834 2.1e-80 303.9 458 45.9
Ah.02g110780 Amaranthus hybridus HOM05D007081 ORTHO05D008834 3.1e-79 300.1 471 45.0
AUR62008170 Chenopodium quinoa HOM05D007081 ORTHO05D008834 3.7e-77 293.1 479 45.1
Nitab4.5_0001284g0100 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.4e-76 290.4 271 55.4
CsaV3_1G001260 Cucumis sativus L. HOM05D007081 ORTHO05D008834 7.1e-76 288.9 370 47.6
ClCG06G017230 Citrullus lanatus HOM05D007081 ORTHO05D008834 1.7e-74 284.3 508 42.9
EL10Ac5g10689 Beta vulgaris HOM05D007081 ORTHO05D008834 1.9e-73 280.8 502 41.6
AUR62028747 Chenopodium quinoa HOM05D007081 ORTHO05D008834 6.8e-71 272.3 262 53.8
Zm00001eb122970 Zea mays HOM05D007081 ORTHO05D008834 2.0e-70 270.8 459 37.9
HPP92_000312 Vanilla planifolia HOM05D007081 ORTHO05D008834 4.4e-70 269.6 463 43.0
Os01g0170100 Oryza sativa ssp. japonica HOM05D007081 ORTHO05D008834 1.1e-60 238.4 283 46.6
CSS0002377 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 5.1e-58 229.6 263 49.4
CSS0021917 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 5.1e-58 229.6 372 41.4
Prupe.5G169300 Prunus persica HOM05D007081 ORTHO05D008834 6.2e-56 222.6 291 54.3
SEGI_13994 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 3.8e-53 213.4 442 34.4
HPP92_000296 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.4e-53 212.6 469 37.1
AagrBONN_evm.TU.Sc2ySwM_117.2172 Anthoceros agrestis HOM05D007081 ORTHO05D008834 8.4e-53 212.2 476 31.3
Glyma.06G179301 Glycine max HOM05D007081 ORTHO05D008834 6.9e-47 192.6 213 50.2
CARHR242710 Cardamine hirsuta HOM05D007081 ORTHO05D008834 1.1e-44 185.3 186 51.6
Mapoly0102s0046 Marchantia polymorpha HOM05D007081 ORTHO05D008834 4.2e-44 183.3 500 29.6
Pp3c25_4990 Physcomitrium patens HOM05D007081 ORTHO05D008834 9.3e-44 182.2 316 37.0
HPP92_000303 Vanilla planifolia HOM05D007081 ORTHO05D008834 6.9e-39 166.0 319 41.1
Cpa.g.sc35.79 Carica papaya HOM05D007081 ORTHO05D008834 9.6e-33 145.6 105 67.6
SGA_v2.0_scaffold90G27873 Striga asiatica HOM05D007081 ORTHO05D008834 6.3e-32 142.9 153 50.3
CBR_g4092 Chara braunii HOM05D007081 ORTHO05D000048 6.9e-31 139.4 400 28.5
CSS0048681 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 2.3e-26 124.4 104 61.5
HPP92_000304 Vanilla planifolia HOM05D007081 ORTHO05D008834 8.2e-24 115.9 102 54.9
Oeu015893.1 Olea europaea HOM05D007081 ORTHO05D008834 1.4e-23 115.2 183 42.1
CSS0035417 Camellia sinensis var. sinensis HOM05D007081 ORTHO05D008834 1.6e-19 101.7 65 73.8
Nitab4.5_0022301g0010 Nicotiana tabacum HOM05D007081 ORTHO05D008834 2.3e-18 97.8 201 41.8
CAN.G12.29 Capsicum annuum HOM05D001989 ORTHO05D000346 1.2e-11 75.5 181 38.1
SEGI_21151 Sequoiadendron giganteum HOM05D007081 ORTHO05D008834 6.1e-11 73.2 73 53.4
arahy.Tifrunner.gnm1.ann1.JE9H0F Arachis hypogaea HOM05D007081 ORTHO05D008834 5.7e-09 66.6 92 40.2
PSO063G3637 Papaver somniferum HOM05D005384 ORTHO05D006477 4.8e-08 63.5 153 30.7
PSO782G4681 Papaver somniferum HOM05D005384 ORTHO05D006477 4.8e-08 63.5 153 30.7
SMO367G0074 Selaginella moellendorffii HOM05D005384 ORTHO05D006477 2.0e-06 58.2 111 34.2
Solyc08g077310.3 Solanum lycopersicum HOM05D005384 ORTHO05D006477 2.0e-06 58.2 139 33.8
Actinidia22110 Actinidia chinensis HOM05D005384 ORTHO05D006477 2.6e-06 57.8 112 33.9
Nitab4.5_0002055g0100 Nicotiana tabacum HOM05D005384 ORTHO05D006477 3.5e-06 57.4 143 37.1
Potri.004G081800 Populus trichocarpa HOM05D005384 ORTHO05D006477 3.5e-06 57.4 185 25.4
Potri.017G138500 Populus trichocarpa HOM05D005384 ORTHO05D006477 3.5e-06 57.4 145 29.7
unitig_21.g20863 Utricularia gibba HOM05D005384 ORTHO05D006477 3.5e-06 57.4 140 31.4
vmacro14142 Vaccinium macrocarpon HOM05D005384 ORTHO05D006477 3.5e-06 57.4 150 29.3
MSTRG.2272 Avicennia marina HOM05D005384 ORTHO05D006477 4.5e-06 57.0 140 30.0
CAN.G572.37 Capsicum annuum HOM05D005384 ORTHO05D006477 5.9e-06 56.6 132 34.8
Rhsim07G0122100 Rhododendron simsii HOM05D005384 ORTHO05D006477 5.9e-06 56.6 154 29.2
Sed0018353 Sechium edule HOM05D005384 ORTHO05D006477 5.9e-06 56.6 152 28.9
ClCG01G008440 Citrullus lanatus HOM05D005384 ORTHO05D006477 7.7e-06 56.2 154 28.6
MELO3C025104.2 Cucumis melo HOM05D005384 ORTHO05D006477 7.7e-06 56.2 154 28.6
SGA_v2.0_scaffold14G06795 Striga asiatica HOM05D005384 ORTHO05D006477 7.7e-06 56.2 141 29.8


User provided reference genes

Program Settings