Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.0e-190 669.8 334 100.0
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 2.8e-159 565.5 348 82.5
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 6.9e-158 560.8 335 84.8
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 8.4e-156 553.9 334 83.8
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 1.6e-154 549.7 334 83.5
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 7.4e-136 487.6 336 74.4
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.3e-135 486.9 336 74.1
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 3.7e-135 485.3 330 72.4
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 1.8e-134 483.0 331 71.9
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 4.1e-134 481.9 329 73.6
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 3.4e-133 478.8 327 72.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 5.8e-133 478.0 334 72.2
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 2.2e-132 476.1 335 72.5
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-131 473.8 335 72.2
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.4e-131 473.4 335 71.9
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.6e-130 469.9 337 71.8
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 2.1e-130 469.5 331 70.7
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 3.5e-130 468.8 336 71.1
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 3.9e-129 465.3 334 71.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.1e-129 464.9 337 70.6
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 8.7e-129 464.2 327 69.7
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 3.7e-127 458.8 331 71.6
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 4.8e-127 458.4 341 71.0
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 1.4e-126 456.8 337 69.4
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.8e-126 456.4 358 66.5
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 3.1e-126 455.7 336 69.3
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.5e-125 453.4 333 69.4
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 1.5e-125 453.4 334 69.5
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.0e-124 450.7 379 63.6
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 1.0e-124 450.7 331 67.7
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.3e-124 450.3 331 68.3
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 2.2e-124 449.5 330 69.4
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.2e-124 449.5 338 68.6
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 2.9e-124 449.1 329 68.4
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 2.9e-124 449.1 334 69.2
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 5.0e-124 448.4 329 68.1
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 6.5e-124 448.0 333 67.9
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 8.5e-124 447.6 334 68.6
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.1e-123 447.2 329 68.4
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 4.2e-123 445.3 333 68.5
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.5e-123 444.9 334 68.6
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 7.2e-123 444.5 329 68.4
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 9.4e-123 444.1 329 68.4
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 3.6e-122 442.2 331 69.8
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.3e-121 439.5 336 68.2
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 5.7e-120 434.9 331 67.1
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 7.4e-120 434.5 338 66.3
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.3e-119 433.7 320 71.2
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 8.2e-119 431.0 333 67.3
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 8.2e-119 431.0 330 67.0
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 4.1e-118 428.7 331 66.5
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 6.9e-118 427.9 330 67.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 6.9e-118 427.9 331 67.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.7e-117 424.5 336 66.7
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 7.7e-117 424.5 336 66.7
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 7.7e-117 424.5 335 65.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 7.7e-117 424.5 331 65.6
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 7.7e-117 424.5 331 66.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.3e-116 423.7 330 66.1
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.2e-116 422.9 330 65.8
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 8.5e-116 421.0 332 65.1
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 8.5e-116 421.0 330 65.5
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 6.1e-114 414.8 329 64.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 3.0e-113 412.5 348 62.4
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 3.9e-113 412.1 334 64.7
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 9.1e-110 401.0 326 63.8
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 4.5e-109 398.7 333 60.7
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 8.5e-108 394.4 334 61.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 8.5e-108 394.4 334 61.7
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 1.1e-107 394.0 331 61.0
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.5e-107 392.9 331 61.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.5e-107 392.9 331 61.6
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 4.2e-107 392.1 334 61.4
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.6e-106 390.2 331 61.3
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 6.1e-106 388.3 332 63.3
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 5.2e-105 385.2 330 62.4
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.5e-104 383.6 330 62.1
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 2.0e-104 383.3 340 60.0
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 9.7e-104 380.9 293 65.5
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.1e-102 377.5 334 59.6
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 7.0e-102 374.8 331 59.2
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.9e-101 371.7 330 59.4
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 5.9e-101 371.7 331 58.6
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.1e-99 367.5 334 59.0
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.9e-99 366.7 331 58.3
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.0e-97 360.9 330 58.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 8.8e-97 357.8 332 55.4
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.2e-96 357.5 330 55.8
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.5e-96 357.1 331 57.4
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 5.7e-96 355.1 301 64.1
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 2.2e-95 353.2 330 57.9
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.8e-94 350.1 353 54.4
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 5.4e-94 348.6 331 56.5
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 7.7e-93 344.7 308 59.1
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.2e-87 326.6 243 70.0
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 6.4e-79 298.5 328 50.6
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-75 287.3 359 45.4
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 1.8e-73 280.4 245 60.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 2.9e-71 273.1 274 53.3
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 1.1e-65 254.6 334 44.0
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 2.0e-64 250.4 462 35.9
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 3.6e-58 229.6 311 43.1
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.1e-57 226.5 184 65.8
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 2.4e-54 216.9 334 40.1
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.2e-53 214.5 192 58.9
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 5.6e-51 205.7 150 66.0
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 2.8e-50 203.4 344 37.5
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 8.4e-47 191.8 165 64.2
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 1.8e-41 174.1 178 55.1
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 8.4e-39 165.2 149 57.7
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.0e-36 158.3 174 48.9
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.5e-35 153.7 146 52.7
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.8e-34 149.4 159 49.1
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 5.5e-30 136.0 147 49.0
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 4.3e-27 126.3 81 70.4
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 3.3e-19 100.1 71 69.0
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 3.7e-18 96.7 133 41.4
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 2.4e-17 94.0 62 67.7
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 5.3e-17 92.8 72 62.5
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.6e-13 79.7 59 71.2
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 7.9e-13 79.0 133 39.8
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 5.1e-12 76.3 57 57.9
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 5.9e-08 62.8 57 63.2
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 3.2e-06 57.0 81 42.0


User provided reference genes

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