Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 9.0e-246 853.2 450 100.0
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 5.7e-216 754.2 450 89.8
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.4e-214 749.6 450 88.7
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 4.7e-210 734.6 452 86.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 6.1e-210 734.2 452 86.5
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 8.0e-210 733.8 452 86.5
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 1.2e-186 656.8 458 76.4
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.7e-183 645.2 463 74.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.4e-182 643.3 456 76.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 5.4e-182 641.3 462 76.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.6e-181 639.8 455 78.5
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 7.8e-181 637.5 456 76.8
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.3e-180 636.0 462 74.5
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.5e-179 633.3 460 73.7
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 2.5e-179 632.5 457 75.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.3e-179 631.7 461 75.7
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 1.2e-178 630.2 457 74.2
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 3.6e-178 628.6 455 76.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.7e-178 628.2 461 75.3
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 8.0e-178 627.5 464 73.7
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.0e-178 627.5 447 76.7
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 8.0e-178 627.5 448 76.3
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.1e-177 627.1 460 75.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 3.1e-177 625.5 462 75.1
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.4e-176 622.1 464 73.5
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.4e-176 621.7 457 72.4
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 3.7e-175 618.6 461 74.0
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 3.7e-175 618.6 456 75.2
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.4e-175 617.8 446 74.0
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.4e-174 616.7 469 72.9
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 1.9e-174 616.3 447 74.9
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 2.7e-173 612.5 462 72.1
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 3.5e-173 612.1 456 73.5
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.7e-172 609.8 441 75.7
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 1.7e-172 609.8 461 72.2
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.0e-172 609.0 452 72.8
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.9e-172 608.6 440 74.1
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 8.6e-172 607.4 461 72.2
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.5e-171 606.7 454 72.2
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.6e-171 604.7 456 72.4
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 7.3e-171 604.4 446 73.5
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.2e-170 603.6 458 71.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 1.2e-170 603.6 465 72.7
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.6e-170 602.1 465 71.0
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.6e-170 602.1 464 71.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 3.6e-170 602.1 445 72.6
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.4e-169 600.1 445 72.6
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 6.8e-169 597.8 445 72.1
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 8.9e-169 597.4 442 70.8
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 3.4e-168 595.5 456 71.1
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 1.3e-167 593.6 463 69.8
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 1.7e-167 593.2 443 71.8
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.2e-167 592.8 455 70.8
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.7e-167 592.0 450 70.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 6.4e-167 591.3 362 84.3
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 6.4e-167 591.3 456 71.5
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.3e-167 590.9 456 70.8
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.3e-167 590.9 435 74.9
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 1.9e-166 589.7 453 70.6
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 2.4e-166 589.3 440 71.1
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.1e-166 588.6 456 70.2
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 7.1e-166 587.8 459 70.2
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 9.2e-166 587.4 456 70.2
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.0e-164 583.9 447 69.4
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 1.1e-163 580.5 442 70.8
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 5.6e-163 578.2 458 67.9
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.6e-163 578.2 450 69.8
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 2.1e-162 576.2 438 70.8
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 4.7e-162 575.1 455 68.1
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 6.2e-162 574.7 456 68.6
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 8.9e-161 570.9 453 68.7
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.5e-160 570.1 456 68.0
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.6e-160 569.3 456 68.6
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-160 569.3 456 68.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.6e-160 569.3 456 68.6
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 4.4e-160 568.5 453 68.4
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 7.6e-160 567.8 461 67.7
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 9.9e-160 567.4 453 68.2
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-159 566.2 456 68.2
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 4.9e-159 565.1 462 67.5
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 8.4e-159 564.3 451 68.3
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-158 563.5 379 76.8
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-158 563.5 379 76.8
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 7.1e-158 561.2 449 67.7
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 3.5e-157 558.9 442 66.5
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 6.0e-157 558.1 450 66.4
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.7e-156 556.6 450 66.2
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 3.9e-156 555.4 450 66.4
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 3.9e-156 555.4 460 66.3
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.1e-155 553.9 468 66.2
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.6e-155 551.6 460 66.5
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.6e-155 551.6 460 66.5
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 2.4e-153 546.2 341 80.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 3.1e-153 545.8 451 66.5
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.0e-153 545.4 463 67.4
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 6.9e-153 544.7 441 66.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.1e-150 537.3 362 76.8
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 5.4e-150 535.0 407 71.3
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.0e-148 529.3 456 66.0
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-147 527.3 365 73.2
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 1.3e-140 503.8 461 63.3
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 4.9e-135 485.3 308 79.5
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 9.3e-134 481.1 381 67.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 5.1e-132 475.3 311 79.1
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 8.7e-132 474.6 307 80.8
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 1.6e-130 470.3 290 82.8
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.7e-119 433.7 282 77.3
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 4.6e-117 425.6 420 56.2
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 6.1e-117 425.2 373 60.9
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 2.0e-115 420.2 375 60.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 7.4e-115 418.3 295 72.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 8.2e-114 414.8 280 72.9
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-111 406.0 371 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.9e-110 403.7 371 56.9
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 9.4e-110 401.4 279 77.1
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 2.7e-109 399.8 372 55.9
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.8e-98 363.2 300 63.7
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.6e-96 356.7 378 53.2
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.1e-94 351.3 361 54.0
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 2.3e-92 343.6 418 49.8
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 8.8e-92 341.7 366 52.2
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 7.5e-91 338.6 380 50.8
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.8e-90 335.9 378 50.8
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.5e-83 314.3 368 50.8
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 2.2e-82 310.5 243 69.1
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 1.7e-79 300.8 383 45.2
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 4.0e-68 263.1 332 48.5
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.3e-50 204.9 150 70.0
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.2e-50 204.1 345 41.2
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-42 176.8 222 48.2
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.4e-41 174.1 164 56.7
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-36 157.9 115 70.4
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 3.2e-33 147.1 120 60.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.1e-30 138.7 83 80.7
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.8e-29 134.0 131 55.7
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.3e-28 129.8 171 46.2
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 6.0e-24 116.3 73 83.6
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 4.0e-20 103.6 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 4.2e-17 93.6 102 52.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.4e-12 77.8 75 50.7
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.9e-09 68.2 140 37.1
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 7.9e-08 62.8 56 64.3


User provided reference genes

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