Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 1.3e-207 726.1 364 100.0
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 6.6e-146 521.2 362 74.3
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.1e-145 520.4 333 79.3
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.0e-143 511.9 362 73.5
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 2.0e-126 456.4 358 64.0
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 2.6e-126 456.1 359 64.1
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 2.5e-121 439.5 331 63.7
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.6e-120 436.8 366 58.7
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 1.1e-119 434.1 335 63.9
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.1e-116 424.1 344 60.8
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 4.6e-115 418.7 324 65.1
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 9.6e-113 411.0 353 58.9
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 6.2e-112 408.3 337 61.4
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 6.2e-112 408.3 333 61.6
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 3.1e-111 406.0 342 60.5
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 5.3e-111 405.2 336 60.1
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 1.5e-110 403.7 346 58.7
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 1.7e-109 400.2 335 60.0
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 5.4e-108 395.2 331 62.5
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 3.9e-106 389.0 334 57.8
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 1.5e-105 387.1 335 58.5
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 2.5e-105 386.3 335 58.8
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 4.8e-104 382.1 288 64.6
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 2.2e-101 373.2 323 64.4
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 7.1e-100 368.2 335 57.9
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 1.1e-97 360.9 326 57.1
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 2.5e-97 359.8 331 54.7
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 3.7e-96 355.9 335 56.1
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 1.4e-95 354.0 332 53.9
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 1.8e-95 353.6 335 53.1
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 1.8e-95 353.6 338 55.0
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 4.0e-95 352.4 333 55.3
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 1.5e-94 350.5 330 53.6
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 7.6e-94 348.2 331 52.9
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 1.7e-93 347.1 325 55.1
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 4.9e-93 345.5 333 52.9
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 1.1e-92 344.4 333 52.6
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.9e-92 343.6 330 51.5
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 6.0e-91 338.6 334 51.2
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 6.0e-91 338.6 330 52.4
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 3.0e-90 336.3 335 50.7
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 3.9e-90 335.9 321 51.7
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 6.7e-90 335.1 329 52.6
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.9e-89 333.6 338 50.6
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 7.4e-89 331.6 334 51.5
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 3.7e-88 329.3 367 47.4
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 8.2e-88 328.2 325 53.2
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 1.1e-87 327.8 331 50.8
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 5.8e-86 322.0 338 52.4
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 3.8e-85 319.3 361 45.4
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 1.4e-84 317.4 353 48.7
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.0e-82 311.2 313 52.1
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 2.5e-81 306.6 367 45.8
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 1.5e-78 297.4 327 49.2
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 1.5e-78 297.4 334 48.5
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 2.6e-78 296.6 333 46.5
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 6.7e-74 282.0 343 45.2
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 8.8e-74 281.6 335 47.2
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 1.3e-72 277.7 334 45.2
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 1.7e-72 277.3 321 48.3
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 4.1e-71 272.7 260 52.7
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 1.2e-70 271.2 231 56.3
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.0e-69 268.1 353 42.5
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 2.2e-69 266.9 319 47.3
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 5.0e-69 265.8 333 45.0
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 1.9e-68 263.8 352 44.0
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 2.1e-67 260.4 406 38.9
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 2.3e-66 256.9 315 44.1
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 2.0e-65 253.8 360 42.8
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 2.2e-64 250.4 240 53.8
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 2.0e-62 243.8 258 49.2
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 2.7e-59 233.4 336 40.2
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 3.9e-58 229.6 284 46.8
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 9.7e-57 224.9 255 45.9
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 5.0e-53 212.6 220 48.6
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 5.0e-53 212.6 188 54.8
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 7.2e-52 208.8 267 46.1
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 1.5e-49 201.1 278 43.9
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 9.1e-47 191.8 149 60.4
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.2e-43 181.4 189 49.7
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 2.7e-38 163.7 181 47.5
Cpa.g.sc69.59 Carica papaya HOM05D006564 ORTHO05D007772 4.5e-38 162.9 136 64.0
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 2.6e-33 147.1 163 48.5
Hund06002 Selenicereus undatus HOM05D006564 ORTHO05D007772 1.7e-32 144.4 144 54.2
SHI17545 Sapria himalayana HOM05D006564 ORTHO05D007772 4.6e-30 136.3 108 63.9
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 1.8e-26 124.4 230 35.7
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 5.2e-26 122.9 333 28.2
Gohir.D06G182100 Gossypium hirsutum HOM05D006564 ORTHO05D007772 4.7e-19 99.8 62 77.4
HanXRQChr12g0383591 Helianthus annuus HOM05D006564 ORTHO05D007772 4.0e-18 96.7 85 54.1
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 3.4e-17 93.6 71 57.7
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.4e-17 93.6 118 38.1
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 7.5e-17 92.4 152 35.5
SEGI_21655 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 4.1e-15 86.7 174 32.8
Os06g0708200 Oryza sativa ssp. japonica HOM05D006564 ORTHO05D007772 7.1e-15 85.9 122 41.8
Migut.E00618 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.2e-14 85.1 74 56.8
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 2.1e-14 84.3 72 56.9
Gohir.1Z049603 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.7e-13 81.3 59 72.9
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 3.0e-13 80.5 63 54.0
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 4.0e-10 70.1 152 34.2
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 7.6e-09 65.9 183 28.4
COL.COLO4_10269 Corchorus olitorius HOM05D006564 ORTHO05D007772 3.7e-08 63.5 32 93.8
Gohir.A02G066401 Gossypium hirsutum HOM05D020837 ORTHO05D007772 4.9e-08 63.2 35 85.7
Gohir.1Z049420 Gossypium hirsutum HOM05D020837 ORTHO05D007772 8.4e-08 62.4 37 81.1
Gohir.1Z049443 Gossypium hirsutum HOM05D020837 ORTHO05D007772 8.4e-08 62.4 37 81.1
Gohir.1Z049643 Gossypium hirsutum HOM05D020837 ORTHO05D007772 8.4e-08 62.4 37 81.1
Gohir.A06G083000 Gossypium hirsutum HOM05D020837 ORTHO05D007772 1.4e-07 61.6 38 78.9
Gohir.A10G131600 Gossypium hirsutum HOM05D020837 ORTHO05D010805 3.2e-07 60.5 35 82.9
arahy.Tifrunner.gnm1.ann1.EX7DRT Arachis hypogaea HOM05D006564 ORTHO05D007772 9.2e-07 58.9 49 55.1
CDE06G0043 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.2e-06 58.5 135 30.4


User provided reference genes

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