Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 0.0e+00 1270.0 895 100.0
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 3.7e-267 925.2 865 77.6
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.3e-264 916.0 865 72.8
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 8.4e-227 791.2 866 72.7
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.4e-226 788.5 866 72.7
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.1e-218 764.2 867 61.4
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.7e-203 713.8 691 74.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 2.4e-189 666.8 883 58.4
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 2.7e-185 653.3 879 62.8
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 5.7e-183 645.6 791 61.4
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 6.7e-176 622.1 807 61.3
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.2e-174 617.1 874 58.6
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 4.2e-170 602.8 712 63.6
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 4.7e-169 599.4 718 65.2
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.1e-167 594.7 880 57.4
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 1.8e-165 587.4 877 56.9
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.7e-164 582.0 876 56.6
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.7e-163 580.9 794 60.6
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 3.0e-160 570.1 714 58.3
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.6e-159 567.0 740 56.8
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 4.4e-159 566.2 940 50.5
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 1.7e-158 564.3 918 53.5
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.4e-157 559.3 699 64.1
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 7.0e-157 558.9 697 63.1
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 7.0e-157 558.9 882 56.6
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 5.9e-156 555.8 711 63.7
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 2.2e-155 553.9 716 63.0
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 1.5e-154 551.2 897 55.3
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 9.4e-154 548.5 743 59.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.3e-152 543.9 873 55.0
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 5.2e-152 542.7 698 60.3
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 6.8e-152 542.3 697 64.6
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 9.8e-151 538.5 720 62.4
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 5.4e-149 532.7 928 49.8
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 2.0e-148 530.8 726 60.9
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 6.6e-147 525.8 717 59.4
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 1.1e-146 525.0 707 59.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 9.5e-146 521.9 717 61.5
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 1.4e-144 518.1 930 50.1
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 4.9e-142 509.6 714 59.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-141 508.4 714 59.5
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 9.2e-141 505.4 877 53.4
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 2.0e-140 504.2 821 54.3
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 3.5e-140 503.4 824 52.9
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 5.9e-140 502.7 878 51.0
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 7.8e-140 502.3 720 57.1
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 1.0e-139 501.9 922 50.9
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 3.9e-139 500.0 792 50.8
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 5.0e-139 499.6 817 52.6
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 5.0e-139 499.6 701 58.9
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 1.9e-138 497.7 719 54.9
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 5.6e-138 496.1 698 59.3
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 7.3e-138 495.7 712 56.0
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 9.5e-138 495.4 732 49.9
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 2.8e-137 493.8 718 53.9
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 3.6e-137 493.4 720 57.9
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.5e-135 488.0 887 50.7
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 4.4e-135 486.5 709 51.6
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 8.6e-131 472.2 724 52.9
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 8.6e-131 472.2 701 52.1
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.1e-130 471.9 717 57.2
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 1.9e-130 471.1 710 56.3
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 4.3e-130 469.9 726 53.6
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 6.2e-129 466.1 887 53.1
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.4e-128 464.9 701 56.2
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.8e-128 464.5 676 58.4
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.8e-128 464.5 717 53.0
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 5.2e-128 463.0 715 53.7
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 6.8e-128 462.6 702 55.0
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 3.7e-126 456.8 717 53.8
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 6.4e-126 456.1 711 50.1
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.9e-125 454.5 718 51.8
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 1.2e-124 451.8 715 56.5
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 6.0e-124 449.5 698 55.9
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 1.5e-122 444.9 726 49.4
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 7.3e-122 442.6 712 50.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 1.6e-121 441.4 712 56.3
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 3.4e-119 433.7 720 56.1
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 7.6e-119 432.6 786 52.5
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 3.2e-117 427.2 879 48.1
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 5.4e-117 426.4 873 50.2
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 2.7e-116 424.1 720 51.4
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 3.5e-116 423.7 887 47.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 2.3e-115 421.0 931 48.4
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 8.6e-115 419.1 800 45.2
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.1e-114 418.7 683 51.0
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 1.5e-114 418.3 726 52.9
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.4e-112 411.0 884 47.5
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 6.8e-112 409.5 877 47.3
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 1.5e-111 408.3 925 48.8
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 3.4e-111 407.1 889 46.8
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 9.9e-111 405.6 874 47.5
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 9.9e-111 405.6 874 47.5
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 9.9e-111 405.6 718 54.5
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 2.9e-110 404.1 735 52.9
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 4.9e-110 403.3 709 49.9
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 3.2e-109 400.6 725 42.5
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 9.3e-109 399.1 812 48.3
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.0e-108 396.4 720 48.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.0e-107 395.6 889 46.6
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.7e-107 394.8 727 50.6
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 8.7e-107 392.5 899 45.2
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 9.6e-106 389.0 889 46.9
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 4.0e-104 383.6 734 51.4
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 2.6e-103 380.9 698 54.9
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 2.9e-102 377.5 716 47.3
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.8e-102 377.1 917 46.0
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 1.4e-101 375.2 884 46.0
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 2.7e-100 370.9 715 51.3
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.3e-99 367.9 574 55.6
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 5.6e-98 363.2 734 49.0
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 7.6e-95 352.8 605 56.0
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 7.6e-95 352.8 722 48.1
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 9.9e-95 352.4 732 52.0
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 6.4e-94 349.7 669 47.8
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 9.3e-85 319.3 708 45.2
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 3.4e-79 300.8 275 62.2
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 7.2e-77 293.1 568 50.0
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.2e-73 281.6 264 61.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.7e-66 256.9 748 44.0
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 5.0e-62 243.8 762 43.7
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 7.2e-61 240.0 255 52.5
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.7e-60 238.0 328 48.8
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.9e-60 236.5 506 54.9
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 5.7e-58 230.3 753 41.8
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 2.0e-55 221.9 312 46.2
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.7e-52 211.5 196 57.7
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.1e-50 206.1 697 41.6
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 4.4e-50 204.1 199 56.8
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 5.9e-47 193.7 243 51.0
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.2e-44 186.0 199 63.3
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 2.3e-43 181.8 714 37.0
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 2.8e-41 174.9 130 70.8
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 1.3e-22 112.8 151 47.7
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 2.6e-18 98.6 128 46.1
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.2e-17 95.5 142 43.0
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 9.2e-16 90.1 202 34.2
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 3.0e-14 85.1 72 62.5
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.5e-13 82.8 98 48.0
FAN22G0459 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.1e-11 75.1 79 60.8
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-10 72.0 223 37.2
ECA247G0578 Erigeron canadensis HOM05D004873 ORTHO05D006122 6.4e-09 67.4 135 41.5
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 2.4e-08 65.5 264 27.3
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 8.6e-06 57.0 126 37.3


User provided reference genes

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