Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 4.0e-276 954.1 485 100.0
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 4.7e-240 834.3 497 86.1
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.2e-233 811.2 495 83.6
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.2e-226 788.9 493 83.6
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 9.5e-225 783.5 508 81.3
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 5.4e-212 741.1 506 77.9
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.0e-207 726.9 506 74.7
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.4e-207 726.5 506 76.1
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 5.2e-207 724.5 498 75.5
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.9e-204 716.1 506 74.9
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.2e-203 713.4 489 76.1
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 5.0e-202 708.0 506 73.9
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 1.2e-198 696.8 495 75.2
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 1.7e-197 693.0 504 73.4
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 1.1e-196 690.3 482 75.7
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 6.0e-195 684.5 500 72.8
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.0e-194 682.2 487 74.5
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 3.9e-194 681.8 498 73.7
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 1.1e-193 680.2 443 79.5
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.8e-192 675.6 499 72.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 4.7e-192 674.9 495 74.1
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 6.2e-192 674.5 487 72.7
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 2.3e-191 672.5 482 73.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 5.2e-191 671.4 492 71.5
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.0e-190 669.5 500 70.8
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 2.0e-190 669.5 504 70.6
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 8.4e-189 664.1 472 74.4
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 3.2e-188 662.1 487 72.5
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.7e-187 659.1 483 69.6
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 6.0e-187 657.9 484 70.9
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 1.7e-186 656.4 519 68.8
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.3e-186 656.0 540 65.6
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.9e-185 652.9 482 72.0
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 9.6e-185 650.6 483 69.2
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 1.2e-184 650.2 500 69.6
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 2.1e-184 649.4 504 67.9
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 1.8e-183 646.4 488 70.3
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 6.9e-183 644.4 485 68.7
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.5e-182 643.3 448 74.3
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 7.6e-182 641.0 499 66.9
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 9.9e-182 640.6 490 69.4
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 9.9e-182 640.6 448 73.0
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.7e-181 639.8 488 68.6
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 1.7e-181 639.8 502 68.1
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.2e-181 639.4 497 66.4
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 2.2e-181 639.4 495 67.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 3.8e-181 638.6 490 69.6
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 8.4e-181 637.5 396 82.3
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.1e-180 637.1 497 66.6
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.1e-180 637.1 433 74.1
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.9e-180 636.3 499 66.1
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 7.1e-180 634.4 501 67.9
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 9.3e-180 634.0 495 68.3
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 1.2e-179 633.6 484 69.2
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 1.6e-179 633.3 507 67.1
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 2.1e-179 632.9 484 70.0
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 4.6e-179 631.7 492 68.1
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.7e-178 629.8 436 72.7
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.7e-178 629.8 509 69.0
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.3e-178 629.4 493 71.2
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.0e-178 629.0 481 70.1
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.9e-178 628.6 492 68.1
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.5e-177 626.7 481 70.3
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 4.3e-177 625.2 494 67.6
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 4.3e-177 625.2 480 67.9
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 7.3e-177 624.4 481 70.3
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.3e-176 623.6 484 68.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.1e-176 622.9 497 66.8
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 4.8e-176 621.7 481 69.6
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 8.1e-176 620.9 497 66.2
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 5.3e-175 618.2 484 68.0
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.0e-174 616.3 465 71.0
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 2.4e-172 609.4 499 65.1
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.0e-170 604.0 476 67.2
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 2.3e-170 602.8 409 74.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 6.7e-170 601.3 504 64.1
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 5.6e-169 598.2 437 71.4
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.2e-166 590.5 439 70.2
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 3.4e-166 589.0 499 63.1
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 3.4e-166 589.0 494 64.4
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 7.6e-166 587.8 499 62.5
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 7.6e-166 587.8 401 76.1
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 1.7e-165 586.6 496 63.1
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.6e-158 562.8 550 57.6
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.0e-157 560.8 490 61.0
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.0e-157 560.8 440 69.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 8.4e-157 557.8 476 63.2
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.8e-152 542.7 423 66.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 4.8e-152 542.0 556 54.9
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.5e-149 531.6 426 64.1
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 6.5e-149 531.6 486 58.6
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 4.2e-148 528.9 375 73.9
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 9.4e-140 501.1 439 62.6
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 4.4e-137 492.3 404 63.6
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 8.2e-136 488.0 487 55.6
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.8e-133 479.2 415 60.2
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 2.5e-132 476.5 372 67.2
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.6e-131 472.6 434 59.0
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 6.1e-131 471.9 552 49.1
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 4.1e-127 459.1 306 73.5
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 7.2e-116 421.8 393 57.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 7.2e-116 421.8 344 63.1
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 2.7e-115 419.9 340 62.4
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 3.8e-109 399.4 492 47.8
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.3e-108 396.4 271 75.3
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 1.0e-106 391.3 507 47.9
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.8e-106 390.6 462 49.6
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 1.5e-105 387.5 435 51.0
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 3.7e-104 382.9 246 78.0
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-103 380.9 391 52.7
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 2.3e-98 363.6 351 59.8
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.6e-94 350.9 391 48.1
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.3e-85 321.2 332 53.3
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.6e-81 307.0 356 48.6
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.4e-73 279.6 245 61.6
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 6.4e-72 275.8 366 44.8
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 1.9e-63 247.7 480 35.0
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.7e-62 243.8 284 49.6
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 4.3e-52 209.9 438 33.1
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 3.0e-37 160.6 140 65.7
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 6.7e-37 159.5 189 50.3
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.8e-35 154.1 128 68.0
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.5e-31 141.0 94 75.5
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.3e-28 130.2 222 38.3
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 8.8e-21 105.9 121 46.3
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-18 97.8 182 35.2
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 3.1e-18 97.4 131 51.9
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 5.3e-18 96.7 109 55.0
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 4.2e-15 87.0 89 51.7
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.1e-14 84.7 95 48.4
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.7e-14 83.6 63 73.0
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 1.8e-13 81.6 67 56.7
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 1.7e-11 75.1 62 58.1
Psat5g095160 Pisum sativum HOM05D001167 ORTHO05D036681 5.0e-08 63.5 73 50.7
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 7.2e-07 59.7 153 34.6


User provided reference genes

Program Settings