Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 0.0e+00 1174.5 611 100.0
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.9e-292 1007.7 611 85.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.2e-290 1002.7 611 84.6
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 4.6e-269 931.0 616 80.4
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 2.2e-263 912.1 615 77.2
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 7.9e-261 903.7 602 77.4
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 7.9e-261 903.7 615 76.9
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 3.9e-260 901.4 615 77.1
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 8.7e-260 900.2 627 75.8
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 5.7e-259 897.5 618 77.2
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 5.7e-259 897.5 615 76.6
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.4e-257 892.9 618 78.2
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.1e-257 891.3 616 76.3
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 7.2e-254 880.6 635 73.5
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 5.7e-251 870.9 629 73.6
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.4e-251 870.5 611 74.5
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.7e-250 869.4 626 74.8
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 1.7e-250 869.4 625 74.6
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.7e-250 869.4 626 73.6
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.1e-249 866.7 626 72.7
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.4e-249 866.3 626 72.5
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-247 859.0 625 72.6
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.4e-244 849.7 603 73.6
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.2e-242 842.4 615 73.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.8e-242 841.3 653 69.2
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 3.1e-241 838.6 617 73.6
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 9.4e-238 827.0 612 71.2
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.6e-237 826.2 645 70.9
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 8.0e-237 823.9 619 73.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.9e-236 821.6 616 71.9
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 5.2e-236 821.2 629 71.4
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.7e-235 817.8 616 70.6
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.3e-234 816.6 617 70.3
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 5.3e-233 811.2 611 72.3
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.6e-232 809.7 615 70.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.5e-232 808.5 623 70.1
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 4.5e-232 808.1 616 69.8
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 6.5e-231 804.3 615 70.4
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.1e-230 803.5 619 69.1
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 3.2e-230 802.0 656 67.5
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 4.2e-230 801.6 635 69.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 7.2e-230 800.8 617 69.2
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.2e-229 800.0 613 69.2
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.8e-228 796.2 616 71.1
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.8e-228 796.2 613 71.3
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 1.5e-227 793.1 611 69.4
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 5.7e-227 791.2 619 69.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 2.8e-226 788.9 613 70.5
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 1.8e-225 786.2 611 70.2
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 2.0e-224 782.7 616 68.5
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.7e-224 782.3 638 67.9
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 5.9e-224 781.2 620 68.5
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.9e-222 776.2 628 67.5
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.6e-221 771.9 621 68.0
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 6.1e-221 771.2 597 68.8
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.8e-220 769.6 618 69.3
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 6.8e-220 767.7 621 66.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 8.8e-220 767.3 556 73.6
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 1.5e-219 766.5 600 68.3
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 4.4e-219 765.0 628 67.4
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.3e-218 763.5 623 67.4
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.7e-218 763.1 616 67.4
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 6.3e-218 761.1 617 67.4
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 2.7e-216 755.7 529 75.0
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 2.3e-215 752.7 617 68.1
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 2.9e-215 752.3 616 66.6
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-214 750.4 621 66.3
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.9e-214 749.6 615 66.7
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-214 748.4 621 65.9
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.1e-213 746.1 615 66.3
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.1e-213 746.1 628 65.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 4.7e-213 745.0 623 65.5
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.0e-212 743.8 615 66.2
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 5.2e-212 741.5 614 66.3
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.9e-212 740.7 652 64.0
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.2e-211 740.3 638 63.8
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-211 739.6 621 65.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.6e-211 739.2 621 65.5
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.3e-210 736.9 612 65.0
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.3e-210 734.6 654 62.7
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 4.1e-209 731.9 633 65.2
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.2e-208 730.3 569 68.4
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 7.8e-208 727.6 623 65.0
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 5.6e-206 721.5 626 63.7
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 2.8e-205 719.2 629 65.8
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.7e-205 718.4 609 65.5
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 7.0e-201 704.5 559 67.6
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 9.2e-201 704.1 562 67.8
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 2.0e-200 703.0 619 63.2
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 6.6e-199 698.0 623 63.6
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 5.6e-198 694.9 502 72.1
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.3e-196 689.5 593 64.2
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.4e-193 680.2 545 67.3
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.3e-191 672.9 526 68.1
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.3e-191 672.9 619 60.7
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 6.6e-191 671.4 624 61.1
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 4.7e-189 665.2 616 59.6
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 6.2e-189 664.8 587 63.4
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 1.8e-188 663.3 623 60.7
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 1.1e-177 627.5 559 62.4
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.2e-177 625.5 594 61.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 4.3e-174 615.5 618 58.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 8.1e-173 611.3 394 80.7
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 4.9e-170 602.1 618 55.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.6e-165 585.9 637 55.1
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.1e-161 574.3 516 62.2
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-160 570.5 398 75.4
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 3.9e-159 565.8 339 84.4
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.2e-154 550.1 502 61.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 2.6e-147 526.6 617 52.7
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 4.5e-147 525.8 340 79.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 3.8e-146 522.7 319 82.4
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 7.9e-144 515.0 612 51.1
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 4.8e-141 505.8 337 76.9
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-138 497.7 434 62.7
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 3.0e-135 486.5 519 54.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-107 393.3 389 57.6
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 5.0e-106 389.4 646 39.8
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.2e-96 358.2 501 49.3
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 3.4e-94 350.1 278 68.3
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 9.8e-94 348.6 329 62.3
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 6.1e-88 329.3 365 52.3
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 5.8e-86 322.8 196 84.7
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.2e-84 317.0 326 58.0
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 1.7e-82 311.2 488 40.8
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 3.9e-82 310.1 691 35.0
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 1.1e-81 308.5 231 70.1
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.4e-78 297.0 273 61.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 3.7e-77 293.5 274 59.9
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-71 274.6 254 60.2
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-70 271.2 242 62.4
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 6.4e-69 266.2 275 56.4
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 2.4e-68 264.2 269 55.0
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.7e-66 258.1 343 50.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.6e-66 256.1 226 57.5
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 4.6e-59 233.4 273 52.7
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 5.6e-57 226.5 740 29.6
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 9.6e-57 225.7 258 51.2
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 9.3e-52 209.1 273 48.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 3.9e-50 203.8 149 76.5
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.5e-46 191.8 208 55.3
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 4.5e-46 190.3 106 88.7
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.8e-46 189.9 301 41.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 9.9e-46 189.1 119 79.8
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.6e-43 180.3 165 60.0
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.9e-43 179.5 151 63.6
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 5.3e-39 166.8 272 40.8
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 9.0e-39 166.0 144 65.3
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.9e-36 158.3 108 73.1
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.6e-35 153.7 237 41.4
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.9e-33 148.3 206 46.1
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 4.8e-32 143.7 75 96.0
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 6.2e-32 143.3 81 91.4
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 8.2e-32 142.9 321 34.9
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.1e-31 142.5 75 96.0
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.6e-30 136.3 158 50.6
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 3.8e-29 134.0 125 57.6
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.6e-27 128.6 126 59.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-27 128.3 172 44.2
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.7e-27 127.9 385 31.4
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 1.8e-26 125.2 123 56.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 3.3e-25 120.9 319 33.5
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.2e-24 118.2 176 45.5
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 8.5e-21 106.3 122 52.5
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-20 104.0 80 66.2
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.6e-19 102.1 252 31.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 1.4e-18 99.0 124 41.1
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 6.7e-18 96.7 89 58.4
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-12 79.3 107 46.7
Zm00001eb247260 Zea mays HOM05D000069 ORTHO05D004367 1.7e-08 65.5 140 40.7
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 4.8e-08 63.9 100 46.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 8.2e-08 63.2 63 50.8
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 5.3e-07 60.5 55 56.4
MBI07_g38547_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 7.0e-07 60.1 73 43.8
MBI01_g03586_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-06 59.3 71 45.1
MBI13_g41189_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.2e-06 59.3 71 45.1
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 1.2e-06 59.3 38 86.8
MBI16_g19191_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.5e-06 58.9 71 45.1
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 3.5e-06 57.8 38 84.2
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 3.5e-06 57.8 73 45.2


User provided reference genes

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