Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 0.0e+00 1197.6 578 100.0
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 0.0e+00 1144.0 578 94.8
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1140.2 578 94.8
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 0.0e+00 1135.9 578 94.5
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 0.0e+00 1135.6 578 94.5
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 0.0e+00 1094.0 571 91.4
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 0.0e+00 1083.9 573 90.2
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 5.9e-311 1070.1 563 89.7
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 3.0e-310 1067.8 557 91.2
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.4e-307 1058.9 574 89.2
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.5e-306 1055.4 578 86.9
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.5e-306 1055.4 578 87.4
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.8e-305 1050.8 578 86.5
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.3e-302 1042.3 574 87.3
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 2.3e-302 1041.6 561 87.2
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 1.5e-301 1038.9 555 87.9
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 4.3e-301 1037.3 578 85.6
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 4.8e-300 1033.9 571 85.5
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 4.5e-298 1027.3 558 85.8
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.0e-297 1026.2 562 87.5
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 1.7e-297 1025.4 562 86.5
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 5.5e-296 1020.4 574 85.7
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 2.7e-295 1018.1 578 84.6
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 1.8e-294 1015.4 554 86.8
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 6.7e-294 1013.4 555 86.1
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.5e-293 1012.3 562 87.0
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 1.5e-293 1012.3 561 85.4
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 3.3e-293 1011.1 534 89.7
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 2.2e-292 1008.4 598 81.1
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.9e-291 1003.4 558 85.7
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 1.2e-290 1002.7 554 85.6
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 4.5e-290 1000.7 571 83.2
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 3.8e-289 997.7 558 84.4
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.1e-288 996.1 571 82.3
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 4.2e-288 994.2 589 80.5
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 7.2e-288 993.4 560 83.0
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 1.6e-287 992.3 524 88.9
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 2.1e-287 991.9 548 84.5
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 1.0e-286 989.6 557 83.1
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 1.8e-286 988.8 571 82.3
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 2.3e-286 988.4 554 83.4
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.3e-286 988.4 571 82.5
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 6.7e-286 986.9 605 78.3
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.1e-285 986.1 557 82.8
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 2.5e-285 984.9 558 83.0
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 5.7e-285 983.8 586 82.4
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 5.7e-285 983.8 571 81.4
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.2e-284 981.9 578 80.1
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 4.8e-284 980.7 579 79.8
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 1.5e-282 975.7 551 82.2
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 2.0e-282 975.3 579 79.4
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 3.4e-282 974.5 580 79.0
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 7.7e-282 973.4 573 81.7
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.4e-280 969.1 579 79.3
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 3.2e-280 968.0 573 81.3
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.2e-280 968.0 579 79.4
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 1.2e-279 966.1 579 79.1
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 3.6e-279 964.5 573 80.5
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 7.9e-279 963.4 551 81.7
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 1.0e-278 963.0 578 78.4
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.4e-278 962.6 554 81.8
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 3.0e-278 961.4 588 80.4
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 3.0e-278 961.4 561 81.3
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.5e-277 959.1 548 81.9
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.5e-277 959.1 536 85.1
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 4.4e-277 957.6 549 82.5
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 2.8e-276 954.9 594 76.8
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 7.0e-275 950.3 557 81.1
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 2.6e-274 948.3 571 78.1
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.3e-273 946.0 555 79.5
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 2.9e-273 944.9 549 80.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 8.5e-273 943.3 572 78.3
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 4.2e-272 941.0 556 79.5
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 7.2e-272 940.3 551 80.4
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 9.4e-272 939.9 571 78.1
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 2.7e-271 938.3 560 79.1
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 3.6e-271 937.9 555 78.9
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 8.0e-271 936.8 555 79.8
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 3.0e-270 934.9 578 76.1
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 6.7e-270 933.7 552 78.3
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 6.7e-270 933.7 533 83.7
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 1.5e-269 932.6 555 78.7
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.0e-269 932.2 557 79.5
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.6e-269 931.8 555 78.6
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 2.6e-269 931.8 552 78.3
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.4e-269 931.0 535 84.7
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 1.3e-268 929.5 549 80.3
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.7e-268 929.1 573 77.8
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 6.3e-268 927.2 517 84.5
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 6.3e-268 927.2 556 78.8
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 2.4e-267 925.2 551 78.8
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 1.3e-265 919.5 535 80.0
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 3.8e-265 917.9 558 78.5
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 6.5e-265 917.1 572 77.1
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 1.1e-264 916.4 550 76.2
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 3.2e-264 914.8 572 76.7
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 3.2e-264 914.8 572 76.7
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.2e-264 914.4 544 82.9
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 5.5e-264 914.1 572 76.9
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 5.5e-264 914.1 572 76.6
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 9.4e-264 913.3 572 76.6
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 9.4e-264 913.3 576 75.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 1.6e-263 912.5 582 75.9
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 1.2e-261 906.4 558 77.2
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.2e-261 906.4 557 77.6
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.4e-261 904.8 557 77.4
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.4e-261 904.8 557 77.6
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.4e-261 904.8 557 77.4
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 2.8e-260 901.7 562 77.4
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 5.4e-259 897.5 578 74.2
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 6.5e-257 890.6 537 79.1
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 7.5e-253 877.1 518 79.7
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-251 872.8 542 77.9
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 1.2e-250 869.8 544 76.3
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 1.0e-246 856.7 495 82.0
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 3.7e-244 848.2 571 72.2
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.4e-243 846.3 587 72.4
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 3.2e-243 845.1 541 75.0
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 5.0e-241 837.8 515 77.7
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 5.6e-240 834.3 517 76.2
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 1.9e-235 819.3 566 69.8
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.7e-233 812.8 557 71.8
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 3.3e-224 781.9 554 68.2
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 1.2e-221 773.5 478 77.2
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 5.1e-201 704.9 416 82.0
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 8.7e-201 704.1 591 59.6
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 6.2e-199 698.0 581 60.2
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 1.8e-198 696.4 553 62.6
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 1.4e-195 686.8 544 62.9
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 4.7e-162 575.5 334 82.9
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.2e-148 530.0 319 79.3
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.3e-143 514.2 359 70.8
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 2.5e-139 500.0 278 83.5
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.0e-137 494.6 263 92.0
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 9.2e-126 454.9 323 69.0
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 3.6e-122 443.0 512 50.4
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-115 421.4 294 71.4
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.1e-105 386.7 217 77.4
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 2.6e-104 383.6 293 62.5
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.5e-101 373.2 217 82.5
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 1.3e-100 371.3 280 65.0
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.1e-89 335.1 247 69.2
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 7.6e-80 302.4 577 32.4
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 3.5e-77 293.5 198 72.7
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 1.3e-76 291.6 201 70.6
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.7e-66 256.9 145 77.9
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 4.6e-61 240.0 144 79.2
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 4.6e-61 240.0 457 31.9
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 6.5e-55 219.5 228 47.4
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.2e-38 164.1 115 63.5
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 6.1e-37 159.8 128 59.4
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 8.0e-37 159.5 142 56.3
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 7.5e-35 152.9 100 71.0
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 1.7e-31 141.7 173 45.7
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 5.0e-31 140.2 106 60.4
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 7.0e-25 119.8 131 51.1
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 1.1e-22 112.5 54 87.0
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 8.3e-18 96.3 56 76.8
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 1.1e-14 85.9 80 52.5
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 1.3e-10 72.4 43 74.4
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.1e-06 59.3 70 37.1
Gorai.004G005700 Gossypium raimondii HOM05D000082 ORTHO05D000038 4.3e-06 57.4 165 21.2
Nn1g06293 Nelumbo nucifera HOM05D000086 ORTHO05D005495 5.6e-06 57.0 56 37.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 5.6e-06 57.0 63 36.5
Potri.001G400600 Populus trichocarpa HOM05D004354 ORTHO05D001065 7.3e-06 56.6 60 38.3
MELO3C021991.2 Cucumis melo HOM05D000082 ORTHO05D000038 9.5e-06 56.2 55 32.7
Thhalv10017563m.g Eutrema salsugineum HOM05D000157 ORTHO05D004871 9.5e-06 56.2 55 38.2


User provided reference genes

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