Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.3e-146 522.7 372 100.0
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 5.0e-133 478.4 374 78.3
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 6.5e-133 478.0 375 78.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.8e-130 469.9 374 91.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 6.7e-130 468.0 374 91.4
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.3e-129 465.7 374 90.4
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.5e-116 423.7 373 86.3
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 2.5e-116 422.9 374 83.4
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.0e-114 416.0 375 84.3
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 3.7e-112 409.1 374 85.0
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 9.2e-111 404.4 375 83.5
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 1.2e-110 404.1 374 84.0
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 7.8e-110 401.4 374 81.3
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.6e-107 393.7 376 80.1
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 4.0e-106 389.0 402 65.9
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 4.0e-106 389.0 376 82.2
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 3.4e-105 386.0 376 71.3
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 6.4e-104 381.7 375 79.7
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 8.3e-104 381.3 375 79.7
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.8e-103 380.2 374 69.3
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 4.1e-103 379.0 377 78.5
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 9.2e-103 377.9 379 82.1
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 1.2e-102 377.5 374 81.3
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 3.5e-102 375.9 374 78.3
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 4.6e-102 375.6 369 79.9
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 5.9e-102 375.2 375 78.4
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.0e-101 374.4 374 83.2
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 1.3e-101 374.0 375 78.1
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.3e-101 373.2 375 78.7
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 3.0e-101 372.9 377 79.8
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 3.0e-101 372.9 375 78.1
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.6e-101 371.7 378 77.0
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 6.6e-101 371.7 378 77.0
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 6.6e-101 371.7 377 80.4
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.1e-100 370.9 398 74.9
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.5e-100 370.5 373 80.2
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.5e-100 370.5 378 76.2
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 1.9e-100 370.2 375 78.4
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.3e-100 369.4 369 81.0
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.6e-99 367.1 371 78.4
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 4.7e-99 365.5 374 79.9
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 8.0e-99 364.8 384 75.8
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 1.8e-98 363.6 383 79.9
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.2e-96 356.7 362 77.9
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 2.2e-96 356.7 374 79.4
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 7.0e-95 351.7 375 78.1
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 2.0e-94 350.1 346 80.3
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 2.7e-94 349.7 373 75.1
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 2.7e-94 349.7 375 78.1
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 1.0e-93 347.8 374 75.9
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 6.6e-93 345.1 369 78.6
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 2.5e-92 343.2 375 76.5
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 4.3e-92 342.4 366 73.2
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 7.3e-92 341.7 368 72.8
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 9.5e-92 341.3 371 75.5
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 2.1e-91 340.1 386 73.8
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.7e-91 339.0 375 66.9
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 1.8e-90 337.0 382 76.7
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.8e-90 337.0 375 74.4
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.3e-88 328.2 334 77.5
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 2.4e-87 326.6 376 72.9
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 2.4e-87 326.6 381 76.6
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 4.1e-87 325.9 328 73.5
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 7.1e-87 325.1 366 72.1
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 3.5e-86 322.8 376 73.4
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 6.0e-86 322.0 348 81.3
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 3.9e-85 319.3 348 81.0
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 6.6e-85 318.5 370 69.7
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 2.1e-83 313.5 344 72.1
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 4.4e-81 305.8 489 42.1
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 3.8e-80 302.8 386 71.0
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 6.0e-78 295.4 360 72.5
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 1.7e-77 293.9 358 72.3
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 5.6e-76 288.9 381 70.9
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 9.6e-76 288.1 380 70.8
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 1.2e-75 287.7 370 67.6
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 1.6e-75 287.3 370 67.6
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 1.6e-75 287.3 370 67.6
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 8.1e-75 285.0 377 69.0
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 8.1e-75 285.0 356 71.1
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 1.4e-74 284.3 370 67.0
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.0e-73 280.4 390 65.9
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 1.3e-72 277.7 380 68.9
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 4.9e-72 275.8 381 68.5
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 2.4e-71 273.5 377 66.8
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 3.2e-71 273.1 379 47.5
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 7.1e-71 271.9 369 66.7
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 1.6e-70 270.8 369 66.7
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.6e-70 270.8 377 66.8
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 6.0e-70 268.9 384 70.1
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 5.6e-68 262.3 381 64.6
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 5.6e-68 262.3 365 68.2
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 5.6e-68 262.3 368 65.8
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 1.3e-67 261.2 378 64.3
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.1e-67 260.4 379 65.7
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 3.1e-66 256.5 336 71.7
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 9.0e-66 255.0 345 68.1
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-65 253.4 370 63.0
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 5.8e-65 252.3 278 77.0
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 1.7e-64 250.8 391 51.9
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 2.2e-64 250.4 393 53.4
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 5.4e-63 245.7 320 72.2
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.8e-61 240.7 377 64.2
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 6.7e-61 238.8 321 71.3
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 4.8e-59 232.6 374 60.7
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.9e-56 223.4 328 71.6
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 7.9e-54 215.3 271 72.7
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 1.8e-53 214.2 356 62.1
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 8.7e-53 211.8 182 65.4
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 7.4e-52 208.8 329 70.2
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 1.3e-51 208.0 366 60.7
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 6.2e-51 205.7 179 64.2
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 5.3e-50 202.6 167 65.3
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 3.4e-49 199.9 309 64.7
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 2.7e-46 190.3 311 64.0
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 8.2e-43 178.7 359 56.5
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 1.2e-41 174.9 132 84.8
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.7e-40 171.0 132 78.0
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.4e-39 167.9 379 53.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 7.2e-39 165.6 173 55.5
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 4.6e-38 162.9 132 75.0
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 1.3e-35 154.8 313 56.9
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 4.8e-35 152.9 314 57.3
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 1.5e-33 147.9 371 51.2
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.3e-29 134.0 132 65.9
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 3.7e-27 126.7 154 48.1
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 2.6e-25 120.6 115 67.0
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 5.0e-24 116.3 259 58.3
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 7.2e-23 112.5 245 60.4
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 1.8e-21 107.8 353 51.0
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.8e-18 97.8 102 56.9
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 5.3e-18 96.3 225 54.2
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 9.4e-15 85.5 59 91.5
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 8.0e-14 82.4 56 94.6
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 8.0e-14 82.4 408 44.6
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 4.0e-13 80.1 56 92.9
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 9.1e-10 68.9 84 66.7


User provided reference genes

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