Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G395500 Theobroma cacao HOM05D004422 ORTHO05D007331 0.0e+00 2102.0 1072 100.0
Gohir.A08G029300 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1858.6 1073 88.4
Gohir.D08G040000 Gossypium hirsutum HOM05D004422 ORTHO05D007331 0.0e+00 1855.9 1074 88.5
Gorai.004G038800 Gossypium raimondii HOM05D004422 ORTHO05D007331 0.0e+00 1851.3 1074 88.2
Duzib268G0035 Durio zibethinus HOM05D004422 ORTHO05D007331 0.0e+00 1760.3 1076 84.8
CiPaw.14G020100 Carya illinoinensis HOM05D004422 ORTHO05D007331 0.0e+00 1755.0 1073 81.8
Atru.chr5.121 Acer truncatum HOM05D004422 ORTHO05D007331 0.0e+00 1744.6 1076 82.4
Manes.05G055300 Manihot esculenta HOM05D004422 ORTHO05D007331 0.0e+00 1743.8 1073 81.9
QL10p000960 Quercus lobata HOM05D004422 ORTHO05D007331 0.0e+00 1723.4 1076 80.9
GSVIVG01018288001 Vitis vinifera HOM05D004422 ORTHO05D007331 0.0e+00 1719.5 1073 80.4
Potri.014G049200 Populus trichocarpa HOM05D004422 ORTHO05D007331 0.0e+00 1718.0 1081 80.7
MD07G1109400 Malus domestica HOM05D004422 ORTHO05D007331 0.0e+00 1714.9 1075 79.5
TWI59G1250 Tripterygium wilfordii HOM05D004422 ORTHO05D007331 0.0e+00 1709.9 1072 80.4
CSS0020521 Camellia sinensis var. sinensis HOM05D004422 ORTHO05D007331 0.0e+00 1696.8 1074 79.2
Haze_02852 Corylus avellana HOM05D004422 ORTHO05D007331 0.0e+00 1691.0 1116 78.0
RcHm_v2.0_Chr1g0348021 Rosa chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1690.6 1073 79.2
CANSAT25G3675 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1668.7 1072 78.7
Sabra14G0035000 Salix brachista HOM05D004422 ORTHO05D007331 0.0e+00 1667.9 1088 77.8
CANSAT25G3884 Cannabis sativa HOM05D004422 ORTHO05D007331 0.0e+00 1664.8 1076 78.8
Rhsim07G0036300 Rhododendron simsii HOM05D004422 ORTHO05D007331 0.0e+00 1659.4 1078 77.4
FAN03G1687 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1646.3 1075 78.0
Dinv43612 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1645.2 1092 76.8
MELO3C022290.2 Cucumis melo HOM05D004422 ORTHO05D007331 0.0e+00 1640.2 1072 76.1
Nn1g00835 Nelumbo nucifera HOM05D004422 ORTHO05D007331 0.0e+00 1639.8 1075 76.7
FAN01G0685 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1637.5 1075 77.3
CsaV3_6G008710 Cucumis sativus L. HOM05D004422 ORTHO05D007331 0.0e+00 1635.2 1072 75.8
Lj3g0007750 Lotus japonicus HOM05D004422 ORTHO05D007331 0.0e+00 1634.0 1078 76.2
FAN06G3830 Fragaria x ananassa HOM05D004422 ORTHO05D007331 0.0e+00 1629.4 1075 77.2
Actinidia18350 Actinidia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1629.0 1072 77.1
THA.LOC104816999 Tarenaya hassleriana HOM05D004422 ORTHO05D007331 0.0e+00 1627.1 1074 76.4
Ca_25801_v3 Cicer arietinum L. HOM05D004422 ORTHO05D007331 0.0e+00 1626.7 1017 79.4
PSO782G5506 Papaver somniferum HOM05D004422 ORTHO05D007331 0.0e+00 1614.0 1073 74.8
HanXRQChr16g0521111 Helianthus annuus HOM05D004422 ORTHO05D007331 0.0e+00 1613.6 1080 74.5
Sed0020409 Sechium edule HOM05D004422 ORTHO05D007331 0.0e+00 1613.2 1072 74.7
Psat4g224760 Pisum sativum HOM05D004422 ORTHO05D007331 0.0e+00 1610.9 1000 79.1
Aqoxy5G04133 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 0.0e+00 1610.1 1076 74.9
Medtr8g006955 Medicago truncatula HOM05D004422 ORTHO05D007331 0.0e+00 1608.2 1078 75.3
Lalb_Chr07g0195401 Lupinus albus HOM05D004422 ORTHO05D007331 0.0e+00 1607.0 1074 75.3
Thhalv10018047m.g Eutrema salsugineum HOM05D004422 ORTHO05D007331 0.0e+00 1602.4 1074 75.6
Eucgr.H04784 Eucalyptus grandis HOM05D004422 ORTHO05D007331 0.0e+00 1600.9 1080 75.6
ECA234G0959 Erigeron canadensis HOM05D004422 ORTHO05D007331 0.0e+00 1599.7 1072 74.8
Lsat_1_v5_gn_4_39461 Lactuca sativa HOM05D004422 ORTHO05D007331 0.0e+00 1598.6 1087 74.0
AT3G48110 Arabidopsis thaliana HOM05D004422 ORTHO05D007331 0.0e+00 1598.2 1075 75.1
AL5G27440 Arabidopsis lyrata HOM05D004422 ORTHO05D007331 0.0e+00 1587.4 1069 74.7
Cfa011065 Carpinus fangiana HOM05D004422 ORTHO05D007331 0.0e+00 1585.9 1073 76.0
Migut.B01531 Erythranthe guttata HOM05D004422 ORTHO05D007331 0.0e+00 1582.4 1083 73.7
Solyc01g090200.4 Solanum lycopersicum HOM05D004422 ORTHO05D007331 0.0e+00 1577.8 1072 73.7
Sopen01g035990 Solanum pennellii HOM05D004422 ORTHO05D007331 0.0e+00 1576.6 1072 73.7
EL10Ac7g18223 Beta vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1571.6 1081 73.8
MSTRG.20687 Avicennia marina HOM05D004422 ORTHO05D007331 0.0e+00 1568.9 1081 73.5
Ciclev10018701m.g Citrus clementina HOM05D004422 ORTHO05D007331 0.0e+00 1567.4 1072 75.1
AUR62025581 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1563.9 1083 73.2
Lj7C547G5 Lonicera japonica HOM05D004422 ORTHO05D007331 0.0e+00 1558.5 1147 70.3
BraA07t30542Z Brassica rapa HOM05D004422 ORTHO05D007331 0.0e+00 1557.3 1073 73.5
ClCG06G002430 Citrullus lanatus HOM05D004422 ORTHO05D007331 0.0e+00 1557.0 1100 72.5
Prupe.2G132400 Prunus persica HOM05D004422 ORTHO05D007331 0.0e+00 1556.6 948 81.1
A07p29020 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1073 73.4
C06p32790 Brassica napus HOM05D004422 ORTHO05D007331 0.0e+00 1553.1 1077 73.6
BcaB02g07011 Brassica carinata HOM05D004422 ORTHO05D007331 0.0e+00 1552.3 1097 72.7
BolC6t38401H Brassica oleracea HOM05D004422 ORTHO05D007331 0.0e+00 1550.4 1078 73.7
Cc02_g25150 Coffea canephora HOM05D004422 ORTHO05D007331 0.0e+00 1545.8 1109 71.7
Sc12g0011040 Simmondsia chinensis HOM05D004422 ORTHO05D007331 0.0e+00 1535.4 971 78.4
Hund18610 Selenicereus undatus HOM05D004422 ORTHO05D007331 0.0e+00 1530.8 1075 73.0
SGA_v2.0_scaffold52G19227 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1509.2 1166 67.5
Dinv44059 Davidia involucrata HOM05D004422 ORTHO05D007331 0.0e+00 1508.8 949 80.5
arahy.Tifrunner.gnm1.ann1.NVW2FV Arachis hypogaea HOM05D004422 ORTHO05D007331 0.0e+00 1505.3 1081 71.6
Oeu000053.1 Olea europaea HOM05D004422 ORTHO05D007331 0.0e+00 1498.0 965 78.1
Phvul.010G049401 Phaseolus vulgaris HOM05D004422 ORTHO05D007331 0.0e+00 1497.3 947 78.8
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 0.0e+00 1478.4 988 74.1
Ah.15g094660 Amaranthus hybridus HOM05D004422 ORTHO05D007331 0.0e+00 1470.3 1225 64.5
SGA_v2.0_scaffold340G49325 Striga asiatica HOM05D004422 ORTHO05D007331 0.0e+00 1451.4 1100 68.9
Os06g0103600 Oryza sativa ssp. japonica HOM05D004422 ORTHO05D007331 0.0e+00 1431.4 1013 70.3
Zm00001eb379480 Zea mays HOM05D004422 ORTHO05D007331 0.0e+00 1429.5 1070 67.9
ATR0057G028 Amborella trichopoda HOM05D004422 ORTHO05D007331 0.0e+00 1424.5 1019 70.3
DCAR_029470 Daucus carota HOM05D004422 ORTHO05D007331 0.0e+00 1420.6 978 72.9
FvH4_7g10270 Fragaria vesca HOM05D004422 ORTHO05D007331 0.0e+00 1380.9 868 79.6
HPP92_002531 Vanilla planifolia HOM05D004422 ORTHO05D007331 0.0e+00 1360.1 978 68.1
Nitab4.5_0000920g0050 Nicotiana tabacum HOM05D004422 ORTHO05D007331 0.0e+00 1343.6 1196 61.5
Sp5g30300 Schrenkiella parvula HOM05D004422 ORTHO05D007331 0.0e+00 1341.6 885 76.3
Aa31LG1G11470 Aethionema arabicum HOM05D004422 ORTHO05D007331 0.0e+00 1325.8 1091 65.3
Peaxi162Scf00475g00041 Petunia axillaris HOM05D004422 ORTHO05D007331 0.0e+00 1295.4 1124 61.7
SalBow5G1783 Salvia bowleyana HOM05D004422 ORTHO05D007331 0.0e+00 1268.1 966 68.3
Mapoly0186s0003 Marchantia polymorpha HOM05D004422 ORTHO05D007331 0.0e+00 1250.3 1026 60.7
AagrBONN_evm.TU.Sc2ySwM_117.3818 Anthoceros agrestis HOM05D004422 ORTHO05D007331 0.0e+00 1239.9 1030 61.3
Pp3c1_42870 Physcomitrium patens HOM05D004422 ORTHO05D007331 0.0e+00 1216.8 1025 60.6
CBR_g19146 Chara braunii HOM05D004422 ORTHO05D007331 0.0e+00 1147.5 1057 54.9
unitig_0.g1355 Utricularia gibba HOM05D004422 ORTHO05D007331 0.0e+00 1139.0 1135 56.2
TAR375G0830 Trochodendron aralioides HOM05D004422 ORTHO05D007331 0.0e+00 1096.3 662 81.6
CARHR156840 Cardamine hirsuta HOM05D004422 ORTHO05D007331 1.9e-310 1069.3 751 71.0
Nitab4.5_0002685g0030 Nicotiana tabacum HOM05D004422 ORTHO05D007331 6.8e-308 1060.8 1098 55.1
PRCOL_00000491 Prasinoderma coloniale HOM05D004422 ORTHO05D007331 2.8e-301 1038.9 1012 53.9
TPR.G33119 Trifolium pratense HOM05D004422 ORTHO05D007331 3.0e-295 1018.8 1004 55.0
Cre10.g433000 Chlamydomonas reinhardtii HOM05D004422 ORTHO05D007331 7.5e-283 977.6 1021 51.4
MCO03G257 Micromonas commoda HOM05D004422 ORTHO05D007331 1.7e-282 976.5 1068 48.9
Carub.0005s1421 Capsella rubella HOM05D004422 ORTHO05D007331 2.4e-268 929.5 623 75.6
Glyma.03G110500 Glycine max HOM05D004422 ORTHO05D007331 3.6e-261 905.6 596 76.3
COL.COLO4_07156 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.2e-229 800.0 814 58.8
CAN.G1473.2 Capsicum annuum HOM05D004422 ORTHO05D007331 4.5e-227 792.3 584 67.5
arahy.Tifrunner.gnm1.ann1.Q83G00 Arachis hypogaea HOM05D004422 ORTHO05D007331 2.9e-218 763.1 497 77.9
Cpa.g.sc22.56 Carica papaya HOM05D004422 ORTHO05D007331 2.1e-216 756.9 472 80.1
QL09p024682 Quercus lobata HOM05D004422 ORTHO05D007331 4.4e-214 749.2 518 75.1
QL04p030045 Quercus lobata HOM05D004422 ORTHO05D007331 3.6e-208 729.6 619 64.3
Cpa.g.sc22.52 Carica papaya HOM05D004422 ORTHO05D007331 6.8e-183 645.6 382 85.3
CDE02G3124 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 3.7e-181 639.8 460 70.4
Carub.0005s1422 Capsella rubella HOM05D004422 ORTHO05D007331 8.9e-175 618.6 410 75.6
vmacro13500 Vaccinium macrocarpon HOM05D004422 ORTHO05D007331 2.2e-173 614.0 628 56.1
VMungo0331G0292 Vigna mungo HOM05D000002 ORTHO05D000001 1.8e-167 594.3 397 74.3
VMungo0331G1046 Vigna mungo HOM05D004422 ORTHO05D007331 2.6e-150 537.3 349 79.1
TPR.G13525 Trifolium pratense HOM05D004422 ORTHO05D007331 6.7e-138 496.1 328 76.5
COL.COLO4_30046 Corchorus olitorius HOM05D004422 ORTHO05D007331 9.6e-137 492.3 815 42.5
FAN10G2373 Fragaria x ananassa HOM05D004422 ORTHO05D007331 4.0e-135 486.9 314 79.6
Glyma.03G111000 Glycine max HOM05D004422 ORTHO05D007331 2.1e-131 474.6 394 65.7
CAN.G1497.17 Capsicum annuum HOM05D004422 ORTHO05D007331 6.0e-131 473.0 340 74.1
TAR375G0769 Trochodendron aralioides HOM05D004422 ORTHO05D007331 4.3e-129 466.8 285 81.1
CDE09G1442 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 1.3e-112 412.1 294 68.4
COL.COLO4_07155 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-111 409.1 241 86.7
SEGI_38441 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.4e-100 369.4 218 80.7
CDE09G1306 Ceratophyllum demersum HOM05D004422 ORTHO05D007331 4.2e-84 317.4 219 74.4
Haze_27357 Corylus avellana HOM05D004422 ORTHO05D007331 3.4e-81 307.8 292 49.3
Actinidia32507 Actinidia chinensis HOM05D004422 ORTHO05D007331 2.7e-62 245.0 174 75.3
HanXRQChr07g0189481 Helianthus annuus HOM05D004422 ORTHO05D021544 8.9e-58 229.9 184 65.2
QL04p030068 Quercus lobata HOM05D004422 ORTHO05D007331 5.4e-55 220.7 189 65.6
SGA_v2.0_scaffold52G19231 Striga asiatica HOM05D004422 ORTHO05D030592 4.6e-54 217.6 148 75.7
SEGI_08386 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 3.0e-45 188.3 149 62.4
COL.COLO4_33296 Corchorus olitorius HOM05D004422 ORTHO05D007331 1.1e-42 179.9 112 79.5
HanXRQChr09g0251021 Helianthus annuus HOM05D004422 ORTHO05D021544 2.7e-38 165.2 203 47.8
SGA_v2.0_scaffold902G53711 Striga asiatica HOM05D004422 ORTHO05D030592 2.5e-36 158.7 111 73.0
SEGI_38096 Sequoiadendron giganteum HOM05D004422 ORTHO05D030592 7.3e-36 157.1 147 56.5
SEGI_36766 Sequoiadendron giganteum HOM05D004422 ORTHO05D013213 9.6e-36 156.8 125 59.2
SEGI_01066 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 9.0e-34 150.2 124 58.1
Lsat_1_v5_gn_5_158961 Lactuca sativa HOM05D004422 ORTHO05D007331 1.3e-32 146.4 100 68.0
Aqoxy1G01621 Aquilegia oxysepala HOM05D004422 ORTHO05D007331 2.2e-32 145.6 90 77.8
Psat7g148920 Pisum sativum HOM05D004422 ORTHO05D013213 2.4e-31 142.1 112 62.5
FAN06G1066 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.2e-31 141.7 128 64.8
FAN10G4150 Fragaria x ananassa HOM05D004422 ORTHO05D007331 3.2e-31 141.7 128 64.8
HanXRQChr09g0251011 Helianthus annuus HOM05D004422 ORTHO05D021544 2.7e-30 138.7 93 75.3
arahy.Tifrunner.gnm1.ann1.Y7Q0ZL Arachis hypogaea HOM05D004422 ORTHO05D013213 6.7e-29 134.0 89 70.8
HanXRQChr16g0520031 Helianthus annuus HOM05D004422 ORTHO05D021544 4.3e-28 131.3 120 59.2
COL.COLO4_35716 Corchorus olitorius HOM05D004422 ORTHO05D157279 1.2e-25 123.2 197 41.1
arahy.Tifrunner.gnm1.ann1.SPAE12 Arachis hypogaea HOM05D004422 ORTHO05D021544 2.4e-23 115.5 78 76.9
COL.COLO4_30045 Corchorus olitorius HOM05D004422 ORTHO05D007331 2.1e-22 112.5 67 85.1
Cpa.g.sc22.55 Carica papaya HOM05D004422 ORTHO05D013213 2.7e-22 112.1 73 75.3
Psat7g007000 Pisum sativum HOM05D004422 ORTHO05D013213 3.9e-21 108.2 132 44.7
SEGI_14209 Sequoiadendron giganteum HOM05D004422 ORTHO05D007331 1.4e-18 99.8 69 68.1
Thecc.01G108300 Theobroma cacao HOM05D004422 ORTHO05D408993 4.2e-15 88.2 137 43.8
TPR.G34724 Trifolium pratense HOM05D004422 ORTHO05D013213 2.3e-13 82.4 55 70.9
TPR.G22860 Trifolium pratense HOM05D004422 ORTHO05D013213 7.4e-12 77.4 59 71.2
Lsat_1_v5_gn_4_171980 Lactuca sativa HOM05D004422 ORTHO05D002867 4.8e-11 74.7 54 66.7
Thecc.03G162400 Theobroma cacao HOM05D004422 ORTHO05D408086 3.4e-09 68.6 45 71.1
TPR.G17647 Trifolium pratense HOM05D004422 ORTHO05D030592 1.7e-08 66.2 45 68.9
arahy.Tifrunner.gnm1.ann1.C8N37A Arachis hypogaea HOM05D004422 ORTHO05D013213 5.0e-08 64.7 44 70.5
arahy.Tifrunner.gnm1.ann1.GNE3C0 Arachis hypogaea HOM05D004422 ORTHO05D013213 5.0e-08 64.7 44 70.5
arahy.Tifrunner.gnm1.ann1.HBQ2MY Arachis hypogaea HOM05D004422 ORTHO05D013213 5.0e-08 64.7 44 70.5
arahy.Tifrunner.gnm1.ann1.BJ0H8V Arachis hypogaea HOM05D004422 ORTHO05D013213 8.5e-08 63.9 44 70.5
CAN.G1473.1 Capsicum annuum HOM05D004422 ORTHO05D013213 1.1e-07 63.5 53 58.5
arahy.Tifrunner.gnm1.ann1.15LB1A Arachis hypogaea HOM05D000228 ORTHO05D013213 2.5e-07 62.4 43 69.8
Psat7g007080 Pisum sativum HOM05D004422 ORTHO05D013213 2.5e-07 62.4 37 70.3
arahy.Tifrunner.gnm1.ann1.6S8N9S Arachis hypogaea HOM05D000228 ORTHO05D013213 7.2e-07 60.8 44 65.9
Thecc.04G201300 Theobroma cacao HOM05D004422 ORTHO05D001336 2.7e-06 58.9 55 54.5


User provided reference genes

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