Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.1e-100 369.0 183 100.0
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 5.2e-99 364.4 183 98.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.0e-98 362.5 183 96.7
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.0e-98 362.5 183 96.7
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.4e-98 361.3 183 96.7
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.1e-93 346.7 183 92.3
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 7.2e-93 344.0 183 92.3
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 1.6e-92 342.8 183 90.7
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 2.7e-92 342.0 183 90.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 3.6e-92 341.7 182 91.8
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.4e-91 339.7 183 90.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.4e-91 339.7 183 91.3
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.3e-91 339.0 183 90.2
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.0e-91 338.6 183 91.3
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.0e-91 338.6 183 90.7
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.0e-91 338.2 183 88.5
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 6.8e-91 337.4 183 90.7
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 6.8e-91 337.4 183 90.7
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 8.8e-91 337.0 181 90.1
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-90 336.7 183 89.6
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.5e-90 336.3 183 90.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 87.4
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 2.6e-90 335.5 183 87.4
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.4e-90 335.1 183 90.7
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 89.1
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 9.8e-90 333.6 181 89.0
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 9.8e-90 333.6 183 88.5
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 88.0
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.7e-89 332.8 183 88.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 89.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 87.4
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 86.9
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.3e-89 330.5 183 86.9
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.5
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 87.4
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 88.0
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 88.5
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 86.3
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 85.8
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 85.8
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 86.9
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 87.4
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 88.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.6e-87 326.2 179 86.6
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 87.4
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 87.4
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 86.9
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 5.9e-87 324.3 182 85.7
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 85.8
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 5.9e-87 324.3 190 84.2
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 7.7e-87 323.9 181 84.5
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 85.2
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 85.8
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.3e-86 323.2 181 84.5
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 2.9e-86 322.0 181 84.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 3.8e-86 321.6 183 84.2
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 6.5e-86 320.9 181 84.0
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 6.5e-86 320.9 183 84.2
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.5e-86 320.9 181 85.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 84.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.1e-85 320.1 182 84.1
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.5e-85 319.7 183 82.0
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 84.2
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.1
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.5e-85 318.9 183 83.1
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.3e-85 318.5 181 84.0
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 3.3e-85 318.5 182 84.1
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 82.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 5.5e-85 317.8 182 83.5
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 7.2e-85 317.4 181 84.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 7.2e-85 317.4 181 84.5
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.2e-84 316.6 181 83.4
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 84.7
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-84 316.2 179 84.9
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-84 316.2 181 84.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-84 316.2 181 84.5
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-84 316.2 181 84.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 84.2
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 179 84.4
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 83.1
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.6e-84 315.1 179 84.9
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 3.6e-84 315.1 183 81.4
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 8.0e-84 313.9 181 83.4
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.0
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.4e-83 313.2 183 83.6
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.0
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.0
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 82.0
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.3e-83 312.4 179 84.4
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 3.0e-83 312.0 179 83.2
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 4.0e-83 311.6 179 83.8
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.5
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.0e-83 311.6 183 82.0
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 82.0
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 81.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.0
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 81.4
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 80.9
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.9
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 80.3
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 79.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 3.1e-80 302.0 228 68.9
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 80.3
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 5.4e-80 301.2 182 82.4
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 4.5e-79 298.1 184 77.2
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 83.1
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.9e-78 295.4 184 76.6
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 3.8e-78 295.0 184 76.6
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.6e-76 289.7 184 76.1
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.8e-76 288.9 183 73.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 3.6e-76 288.5 184 75.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.5e-74 283.1 152 90.1
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 3.4e-74 282.0 155 85.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 7.5e-74 280.8 182 74.2
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 9.8e-74 280.4 219 67.1
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 9.8e-74 280.4 184 72.3
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.4e-72 276.6 183 71.0
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 4.1e-72 275.0 183 76.5
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.1e-72 275.0 155 85.8
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 9.2e-72 273.9 185 72.4
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.0e-71 272.7 183 68.3
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.1e-67 260.4 152 82.9
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.9e-65 252.3 181 71.3
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 3.7e-65 251.9 181 65.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 9.2e-64 247.3 136 86.0
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 3.5e-63 245.4 181 68.0
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 3.9e-62 241.9 188 68.1
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 7.3e-61 237.7 179 72.1
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.6e-60 236.5 183 66.7
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.5e-58 229.9 183 66.7
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 7.5e-58 227.6 138 77.5
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 7.1e-56 221.1 155 71.6
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-55 219.9 158 67.7
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.9e-53 213.0 175 62.3
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.6e-52 208.8 152 67.1
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.4e-48 196.1 102 93.1
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 5.4e-48 194.9 158 62.7
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.5e-47 192.2 149 64.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-46 189.9 100 94.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-46 189.1 99 92.9
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.9e-46 188.7 106 84.0
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.6e-44 183.3 102 85.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 2.8e-44 182.6 100 87.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.4e-43 180.3 186 46.8
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 3.4e-42 175.6 132 64.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.2e-40 169.1 134 64.9
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 5.1e-38 161.8 99 75.8
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.9e-35 151.4 81 90.1
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.2e-33 146.4 105 67.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.0e-30 136.0 81 80.2
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 4.3e-29 132.1 78 82.1
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.8e-28 129.4 101 64.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 6.9e-27 124.8 106 60.4
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.2e-23 114.0 106 60.4
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 9.6e-21 104.4 68 67.6
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.2e-18 97.4 52 92.3
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 2.0e-18 96.7 127 48.0
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.4e-10 69.3 121 38.8
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 6.5e-09 65.1 81 45.7
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 2.5e-08 63.2 37 73.0


User provided reference genes

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