Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G164600 Theobroma cacao HOM05D006642 ORTHO05D008856 2.0e-192 676.4 583 100.0
Duzib147G0394 Durio zibethinus HOM05D006642 ORTHO05D008856 2.3e-161 573.2 587 87.9
Gorai.012G039700 Gossypium raimondii HOM05D006642 ORTHO05D008856 2.9e-159 566.2 582 90.2
Gohir.A05G380400 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.6e-154 549.3 579 90.5
Gohir.D04G035200 Gossypium hirsutum HOM05D006642 ORTHO05D008856 3.5e-149 532.7 369 89.4
COL.COLO4_29911 Corchorus olitorius HOM05D006642 ORTHO05D008856 1.2e-141 507.7 373 85.5
Ciclev10014674m.g Citrus clementina HOM05D006642 ORTHO05D008856 6.0e-109 399.1 297 87.2
TAR624G0481 Trochodendron aralioides HOM05D006642 ORTHO05D008856 7.4e-107 392.1 342 76.6
Eucgr.K01239 Eucalyptus grandis HOM05D006642 ORTHO05D008856 1.3e-103 381.3 297 83.2
Nn4g26621 Nelumbo nucifera HOM05D006642 ORTHO05D008856 2.2e-103 380.6 325 76.9
TWI23G0590 Tripterygium wilfordii HOM05D006642 ORTHO05D008856 2.2e-103 380.6 500 85.8
Cfa023538 Carpinus fangiana HOM05D006642 ORTHO05D008856 3.8e-103 379.8 297 83.2
CANSAT64G1219 Cannabis sativa HOM05D006642 ORTHO05D008856 2.5e-102 377.1 295 83.1
MBI02_g40097_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D008856 3.2e-102 376.7 347 72.3
Atru.chr6.2750 Acer truncatum HOM05D006642 ORTHO05D008856 5.5e-102 375.9 296 82.4
CSS0001521 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-101 374.4 295 82.0
CSS0049788 Camellia sinensis var. sinensis HOM05D006642 ORTHO05D008856 1.6e-101 374.4 295 82.0
Potri.001G220300 Populus trichocarpa HOM05D006642 ORTHO05D008856 3.5e-101 373.2 295 83.4
PGR142G3441 Punica granatum HOM05D006642 ORTHO05D008856 4.6e-101 372.9 295 82.4
Hma1.2p1_0073F.1_g038540 Hydrangea macrophylla HOM05D006642 ORTHO05D008856 1.3e-100 371.3 344 73.0
Manes.09G006600 Manihot esculenta HOM05D006642 ORTHO05D008856 1.3e-100 371.3 334 74.3
Oeu051395.1 Olea europaea HOM05D006642 ORTHO05D008856 2.3e-100 370.5 295 81.0
MD09G1145700 Malus domestica HOM05D006642 ORTHO05D008856 3.0e-100 370.2 297 80.1
Prupe.3G180100 Prunus persica HOM05D006642 ORTHO05D008856 3.9e-100 369.8 297 81.5
Sabra16G0124100 Salix brachista HOM05D006642 ORTHO05D008856 5.1e-100 369.4 295 82.7
arahy.Tifrunner.gnm1.ann1.T7AVMG Arachis hypogaea HOM05D006642 ORTHO05D008856 8.7e-100 368.6 300 79.7
MSTRG.6613 Avicennia marina HOM05D006642 ORTHO05D008856 5.7e-99 365.9 295 80.7
Cc05_g00360 Coffea canephora HOM05D006642 ORTHO05D008856 7.4e-99 365.5 295 80.7
Sed0004539 Sechium edule HOM05D006642 ORTHO05D008856 9.6e-99 365.2 295 81.0
Nitab4.5_0001843g0110 Nicotiana tabacum HOM05D006642 ORTHO05D008856 2.8e-98 363.6 295 79.7
GSVIVG01020809001 Vitis vinifera HOM05D006642 ORTHO05D008856 4.8e-98 362.8 292 82.2
Dinv09723 Davidia involucrata HOM05D006642 ORTHO05D008856 1.4e-97 361.3 295 80.3
Nitab4.5_0007665g0020 Nicotiana tabacum HOM05D006642 ORTHO05D008856 1.8e-97 360.9 295 79.0
Aqoxy5G04293 Aquilegia oxysepala HOM05D006642 ORTHO05D008856 2.4e-97 360.5 349 70.2
Sopen07g023170 Solanum pennellii HOM05D006642 ORTHO05D008856 1.0e-95 355.1 295 78.6
PGSC0003DMG400015924 Solanum tuberosum HOM05D006642 ORTHO05D008856 1.0e-95 355.1 295 78.6
HPP92_011054 Vanilla planifolia HOM05D006642 ORTHO05D008856 2.2e-95 354.0 300 76.3
Solyc07g043600.4 Solanum lycopersicum HOM05D006642 ORTHO05D008856 2.9e-95 353.6 295 78.3
HanXRQChr01g0029361 Helianthus annuus HOM05D006642 ORTHO05D008856 8.5e-95 352.1 295 78.3
DCAR_023000 Daucus carota HOM05D006642 ORTHO05D008856 1.9e-94 350.9 297 76.8
Sp5g03940 Schrenkiella parvula HOM05D006642 ORTHO05D008856 2.5e-94 350.5 296 79.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.2e-94 350.1 328 72.0
Thhalv10005856m.g Eutrema salsugineum HOM05D006642 ORTHO05D008856 3.2e-94 350.1 296 79.4
CAN.G819.5 Capsicum annuum HOM05D006642 ORTHO05D008856 4.2e-94 349.7 295 78.3
AUR62002293 Chenopodium quinoa HOM05D006642 ORTHO05D008856 1.6e-93 347.8 298 77.5
Phvul.007G015300 Phaseolus vulgaris HOM05D006642 ORTHO05D008856 1.6e-93 347.8 329 71.1
Ah.07g201920 Amaranthus hybridus HOM05D006642 ORTHO05D008856 2.1e-93 347.4 301 76.1
Lj5g0013784 Lotus japonicus HOM05D006642 ORTHO05D008856 2.7e-93 347.1 328 72.3
vmacro19989 Vaccinium macrocarpon HOM05D006642 ORTHO05D008856 2.7e-93 347.1 295 78.0
Lsat_1_v5_gn_1_49160 Lactuca sativa HOM05D006642 ORTHO05D008856 4.6e-93 346.3 329 64.1
Ah.07g198470 Amaranthus hybridus HOM05D006642 ORTHO05D008856 6.1e-93 345.9 301 59.5
Carub.0005s2580 Capsella rubella HOM05D006642 ORTHO05D008856 6.1e-93 345.9 296 78.7
Glyma.10G285200 Glycine max HOM05D006642 ORTHO05D008856 6.1e-93 345.9 295 76.3
Lalb_Chr06g0163881 Lupinus albus HOM05D006642 ORTHO05D008856 7.9e-93 345.5 328 71.3
THA.LOC104802288 Tarenaya hassleriana HOM05D006642 ORTHO05D008856 7.9e-93 345.5 296 79.4
CDE05G1065 Ceratophyllum demersum HOM05D006642 ORTHO05D008856 1.0e-92 345.1 325 72.9
Sc14g0005210 Simmondsia chinensis HOM05D006642 ORTHO05D008856 1.0e-92 345.1 297 75.4
VMungo0720G2195 Vigna mungo HOM05D000164 ORTHO05D000096 1.0e-92 345.1 329 70.8
Actinidia39996 Actinidia chinensis HOM05D006642 ORTHO05D008856 1.3e-92 344.7 295 76.6
CARHR169450 Cardamine hirsuta HOM05D006642 ORTHO05D008856 1.8e-92 344.4 296 78.4
Glyma.20G103800 Glycine max HOM05D006642 ORTHO05D008856 3.0e-92 343.6 295 76.6
ATR1098G151 Amborella trichopoda HOM05D006642 ORTHO05D008856 8.7e-92 342.0 295 74.9
Psat6g233520 Pisum sativum HOM05D006642 ORTHO05D008856 8.7e-92 342.0 328 70.7
Medtr1g114300 Medicago truncatula HOM05D006642 ORTHO05D008856 1.9e-91 340.9 295 76.6
Aa31LG10G13530 Aethionema arabicum HOM05D006642 ORTHO05D008856 3.3e-91 340.1 296 77.4
ECA248G0755 Erigeron canadensis HOM05D006642 ORTHO05D008856 3.3e-91 340.1 295 76.3
unitig_899.g15288 Utricularia gibba HOM05D006642 ORTHO05D008856 3.3e-91 340.1 328 70.1
AUR62015397 Chenopodium quinoa HOM05D006642 ORTHO05D008856 5.7e-91 339.3 330 56.7
AT3G59040 Arabidopsis thaliana HOM05D006642 ORTHO05D008856 7.4e-91 339.0 296 77.4
RcHm_v2.0_Chr2g0152561 Rosa chinensis HOM05D006642 ORTHO05D008856 7.4e-91 339.0 295 76.6
SGA_v2.0_scaffold73G24452 Striga asiatica HOM05D006642 ORTHO05D008856 7.4e-91 339.0 295 75.6
Os08g0191900 Oryza sativa ssp. japonica HOM05D006642 ORTHO05D008856 3.7e-90 336.7 295 74.9
Zm00001eb413390 Zea mays HOM05D006642 ORTHO05D008856 4.8e-90 336.3 301 73.1
EL10Ac8g19571 Beta vulgaris HOM05D006642 ORTHO05D008856 1.4e-89 334.7 316 73.1
FAN02G0564 Fragaria x ananassa HOM05D006642 ORTHO05D008856 2.2e-87 327.4 295 74.6
Hund08483 Selenicereus undatus HOM05D006642 ORTHO05D008856 2.9e-87 327.0 295 74.2
FAN05G5081 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.1e-86 325.1 295 74.6
Migut.M00108 Erythranthe guttata HOM05D006642 ORTHO05D008856 4.2e-86 323.2 295 57.3
FvH4_6g38970 Fragaria vesca HOM05D006642 ORTHO05D008856 4.2e-86 323.2 295 74.2
FAN14G1916 Fragaria x ananassa HOM05D006642 ORTHO05D008856 5.5e-86 322.8 295 74.2
TPR.G4069 Trifolium pratense HOM05D006642 ORTHO05D008856 1.6e-85 321.2 321 67.3
ClCG11G016650 Citrullus lanatus HOM05D006642 ORTHO05D008856 2.7e-85 320.5 295 74.2
CsaV3_4G032160 Cucumis sativus L. HOM05D006642 ORTHO05D008856 3.6e-85 320.1 295 74.6
PSO675G5462 Papaver somniferum HOM05D006642 ORTHO05D008856 3.9e-84 316.6 294 73.5
PSO541G5267 Papaver somniferum HOM05D006642 ORTHO05D008856 1.8e-81 307.8 293 72.4
BcaC07g40235 Brassica carinata HOM05D006642 ORTHO05D008856 4.1e-81 306.6 296 73.3
C08p34230 Brassica napus HOM05D006642 ORTHO05D008856 6.9e-81 305.8 296 73.6
BolC8t51020H Brassica oleracea HOM05D006642 ORTHO05D008856 6.9e-81 305.8 296 73.6
BcaC07g40308 Brassica carinata HOM05D006642 ORTHO05D008856 2.6e-80 303.9 293 74.1
A09p51470 Brassica napus HOM05D006642 ORTHO05D008856 3.4e-80 303.5 296 73.3
QL02p091883 Quercus lobata HOM05D006642 ORTHO05D008856 1.0e-79 302.0 295 72.5
QL93p2017_0027 Quercus lobata HOM05D006642 ORTHO05D008856 6.5e-79 299.3 292 72.9
Rhsim05G0172300 Rhododendron simsii HOM05D006642 ORTHO05D008856 1.2e-77 295.0 295 70.8
BraA09t40583Z Brassica rapa HOM05D006642 ORTHO05D008856 2.3e-76 290.8 296 71.3
MD17G1132200 Malus domestica HOM05D006642 ORTHO05D008856 7.4e-75 285.8 291 67.4
Cpa.g.sc50.124 Carica papaya HOM05D006642 ORTHO05D008856 1.1e-73 282.0 503 68.2
MELO3C026387.2 Cucumis melo HOM05D006642 ORTHO05D008856 1.5e-70 271.6 283 71.0
Haze_13626 Corylus avellana HOM05D006642 ORTHO05D008856 8.8e-68 262.3 211 88.2
Nn4g26620 Nelumbo nucifera HOM05D006642 ORTHO05D008856 1.5e-54 218.4 136 74.3
Lj1A585G41 Lonicera japonica HOM05D006642 ORTHO05D008856 1.9e-54 218.0 154 68.2
AL5G40920 Arabidopsis lyrata HOM05D006642 ORTHO05D008856 4.0e-52 210.3 196 82.1
HPP92_011074 Vanilla planifolia HOM05D006642 ORTHO05D008856 1.2e-51 208.8 144 68.1
EL10Ac5g11659 Beta vulgaris HOM05D006642 ORTHO05D008856 2.4e-49 201.1 147 66.7
CiPaw.03G197600 Carya illinoinensis HOM05D006642 ORTHO05D008856 6.1e-45 186.4 103 90.3
EL10Ac5g11660 Beta vulgaris HOM05D006642 ORTHO05D008856 4.1e-41 173.7 103 83.5
Mapoly0047s0104 Marchantia polymorpha HOM05D006642 ORTHO05D008856 1.4e-33 148.7 276 50.0
Pp3c26_11100 Physcomitrium patens HOM05D006642 ORTHO05D008856 2.5e-30 137.9 262 48.1
SMO259G0047 Selaginella moellendorffii HOM05D006642 ORTHO05D008856 4.0e-28 130.6 265 45.7
C06p25860 Brassica napus HOM05D000461 ORTHO05D001840 4.4e-27 127.1 285 34.4
BcaC08g44955 Brassica carinata HOM05D006642 ORTHO05D008856 1.6e-24 118.6 82 69.5
FAN09G4833 Fragaria x ananassa HOM05D006642 ORTHO05D008856 1.6e-24 118.6 84 66.7
BcaB02g07488 Brassica carinata HOM05D006642 ORTHO05D008856 1.7e-23 115.2 74 78.4
BcaB02g07487 Brassica carinata HOM05D000461 ORTHO05D001840 4.7e-21 107.1 78 67.9
BolC6t37747H Brassica oleracea HOM05D006642 ORTHO05D032904 3.1e-20 104.4 93 62.4
BcaC08g44954 Brassica carinata HOM05D006642 ORTHO05D032904 1.4e-12 79.0 77 59.7
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 1.7e-07 62.0 113 28.3
MBI02_g40094_MAGBIO Magnolia biondii HOM05D006642 ORTHO05D027104 6.6e-07 60.1 31 96.8
Lj1A585G40 Lonicera japonica HOM05D006642 ORTHO05D027104 8.7e-07 59.7 31 93.5
Ca_27070_v3 Cicer arietinum L. HOM05D002503 ORTHO05D009151 1.1e-06 59.3 113 24.8


User provided reference genes

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