Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1394.0 699 100.0
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1240.7 723 87.6
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1237.2 725 87.3
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1226.8 710 87.9
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1219.9 715 87.6
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1172.9 726 83.3
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1143.6 731 81.1
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1136.7 730 80.1
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1134.4 721 80.7
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 730 80.7
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1133.6 750 79.7
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1133.2 721 80.9
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1129.4 750 79.3
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1127.9 736 78.7
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1126.3 722 80.1
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 735 79.2
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1125.5 720 80.1
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1125.5 729 79.1
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1120.1 739 78.5
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1119.0 726 79.6
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1117.4 718 79.8
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1117.4 724 79.0
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1116.7 739 78.9
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 718 79.9
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1105.1 714 79.6
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 731 78.2
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1102.8 653 84.7
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 727 78.1
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1097.8 714 79.3
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1097.0 725 78.6
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 725 78.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1094.0 696 80.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 724 77.2
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1092.4 725 77.2
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 736 76.4
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 659 83.6
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 711 78.6
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 729 77.1
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1091.3 724 78.5
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1090.5 663 81.7
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 722 78.3
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 706 78.6
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1089.7 702 80.2
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1087.4 713 77.6
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1086.6 653 84.1
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1086.2 689 80.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1084.3 730 76.4
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1080.5 692 79.9
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1078.5 666 81.4
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1076.6 628 85.5
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1076.2 693 78.9
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.4e-311 1072.4 786 71.6
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 1.4e-311 1072.4 786 71.6
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 3.3e-311 1071.2 748 75.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 7.2e-311 1070.1 729 77.8
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 1.1e-309 1066.2 660 80.9
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.4e-309 1065.8 728 76.9
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.4e-309 1065.8 748 75.3
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 1.5e-308 1062.4 660 81.4
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 4.4e-308 1060.8 649 81.0
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 5.8e-308 1060.4 816 69.9
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 8.3e-307 1056.6 656 80.6
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 5.4e-306 1053.9 639 82.3
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 7.1e-306 1053.5 640 82.2
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 2.1e-305 1052.0 707 76.7
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 4.6e-305 1050.8 639 82.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 5.1e-304 1047.3 714 75.9
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 1.5e-303 1045.8 645 81.2
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 1.5e-303 1045.8 645 81.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 2.1e-302 1042.0 656 79.9
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 8.1e-302 1040.0 657 79.9
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 1.4e-301 1039.3 632 83.7
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 4.4e-300 1034.2 708 75.4
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.2e-299 1031.9 672 79.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.9e-299 1031.6 926 61.9
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 1.1e-298 1029.6 637 80.7
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.9e-298 1028.9 652 77.8
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 3.2e-298 1028.1 715 73.0
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 2.7e-297 1025.0 639 81.1
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 3.9e-296 1021.1 795 68.8
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.9e-290 1002.3 657 78.7
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 1.5e-284 982.6 746 70.5
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 5.4e-282 974.2 792 68.1
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 4.3e-271 937.9 686 70.3
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 8.2e-270 933.7 561 84.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 1.2e-268 929.9 675 68.7
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.4e-258 896.3 622 72.2
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 3.6e-257 891.7 611 74.6
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.2e-254 882.5 529 83.2
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.4e-253 879.0 532 81.0
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 5.3e-253 877.9 563 81.0
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 9.1e-253 877.1 513 84.4
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 3.4e-252 875.2 525 82.7
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 1.1e-250 870.2 544 81.2
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.0e-248 863.6 602 71.4
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.4e-248 863.2 555 79.6
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 5.3e-245 851.3 605 72.2
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 1.1e-239 833.6 637 66.2
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.9e-235 818.9 592 72.8
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 2.1e-225 786.2 662 61.5
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 4.2e-218 761.9 505 79.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 2.6e-215 752.7 457 82.9
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 6.4e-206 721.5 610 61.3
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 7.8e-204 714.5 501 73.9
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 4.6e-172 609.0 386 78.5
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 7.3e-170 601.7 410 76.6
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 7.1e-165 585.1 401 72.8
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.0e-163 581.3 352 81.5
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.5e-159 567.4 401 72.6
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.3e-153 547.7 303 87.1
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 6.5e-150 535.4 420 68.3
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.5e-117 427.9 594 40.9
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.7e-113 414.5 647 37.9
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 7.0e-104 382.5 657 38.4
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.9e-102 377.1 328 61.3
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 8.0e-100 369.0 228 82.5
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 5.2e-99 366.3 323 60.7
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 8.9e-99 365.5 345 59.1
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-95 354.8 482 42.9
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 1.5e-82 311.6 169 91.1
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 8.9e-75 285.8 161 85.1
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 4.0e-59 233.8 161 68.9
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 8.4e-57 226.1 192 61.5
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 7.3e-53 213.0 187 67.4
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 2.9e-49 201.1 114 89.5
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 4.5e-42 177.2 185 48.6
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 2.2e-41 174.9 253 45.8
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 4.2e-40 170.6 263 43.3
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 7.1e-40 169.9 105 77.1
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.1e-35 156.0 112 66.1
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 5.3e-35 153.7 148 56.8
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.3e-33 149.1 95 72.6
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.7e-33 148.7 92 83.7
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.1e-32 146.0 139 59.7
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 4.2e-32 144.1 83 85.5
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 7.9e-31 139.8 96 72.9
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 5.1e-30 137.1 97 77.3
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 1.8e-27 128.6 95 70.5
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 2.4e-19 101.7 60 78.3
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 1.3e-17 95.9 44 86.4
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.4e-16 92.4 47 80.9
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 3.6e-15 87.8 48 79.2
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 1.0e-14 86.3 73 61.6
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.0e-14 84.7 69 65.2


User provided reference genes

Program Settings