Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 0.0e+00 1094.7 565 100.0
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 1.5e-282 975.7 557 90.7
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 3.5e-279 964.5 555 89.0
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.5e-277 959.1 563 87.9
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 1.2e-274 949.5 555 88.1
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 4.6e-271 937.6 557 86.5
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 3.6e-244 848.2 553 78.1
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 3.8e-241 838.2 553 77.6
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 6.4e-241 837.4 555 77.3
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.3e-236 823.2 553 76.5
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 1.6e-236 822.8 552 75.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.2e-234 816.6 555 75.9
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 2.9e-233 812.0 552 75.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 3.8e-233 811.6 553 75.9
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 8.4e-233 810.4 557 73.8
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 1.8e-230 802.7 553 75.2
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 8.7e-230 800.4 556 74.8
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 5.6e-229 797.7 552 74.6
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 9.6e-229 797.0 552 74.6
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 9.6e-229 797.0 553 75.0
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 1.2e-226 790.0 553 72.9
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.9e-224 782.7 556 72.3
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 7.1e-224 780.8 555 71.5
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 9.3e-224 780.4 556 72.5
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 2.7e-223 778.9 552 72.8
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 1.0e-222 776.9 557 71.5
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 2.3e-222 775.8 559 73.2
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 3.0e-222 775.4 554 72.6
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 8.7e-222 773.9 557 72.2
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 5.7e-221 771.2 556 71.6
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 8.2e-220 767.3 560 72.7
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 3.1e-219 765.4 553 71.8
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 2.6e-218 762.3 555 71.9
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 2.6e-218 762.3 552 69.9
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 3.4e-218 761.9 553 70.5
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 4.5e-218 761.5 558 71.7
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 4.5e-218 761.5 552 69.2
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 7.6e-218 760.8 555 71.0
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 1.0e-217 760.4 553 69.4
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 1.7e-217 759.6 552 69.6
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 2.9e-217 758.8 556 70.5
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 3.8e-217 758.4 563 70.5
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 3.8e-217 758.4 552 71.2
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 3.8e-217 758.4 559 70.8
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 5.0e-217 758.1 553 70.9
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 5.0e-217 758.1 553 71.1
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 5.0e-217 758.1 555 71.4
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 8.5e-217 757.3 558 70.6
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.2e-216 755.4 552 71.6
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 4.2e-216 755.0 559 70.5
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 1.6e-215 753.1 555 69.7
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.6e-215 751.9 552 71.2
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 3.6e-215 751.9 561 70.1
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 6.1e-215 751.1 557 71.6
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 6.1e-215 751.1 565 69.9
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.8e-214 749.6 556 70.7
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.8e-214 749.6 555 70.1
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 3.9e-214 748.4 554 70.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 6.7e-214 747.7 543 69.8
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.1e-213 746.9 553 70.5
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 1.5e-213 746.5 558 69.7
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 5.7e-213 744.6 553 71.1
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 9.7e-213 743.8 557 70.9
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 1.3e-212 743.4 556 70.1
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.3e-212 743.4 553 69.6
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.3e-212 743.4 555 70.6
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 2.8e-212 742.3 449 84.0
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 3.7e-212 741.9 557 70.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 8.2e-212 740.7 552 69.6
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 1.4e-211 740.0 584 67.0
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 5.3e-211 738.0 553 69.6
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 5.3e-211 738.0 561 68.6
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 3.4e-210 735.3 557 68.6
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 7.7e-210 734.2 517 73.5
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 1.3e-209 733.4 558 69.2
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 2.2e-209 732.6 556 67.6
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.1e-208 730.3 558 69.0
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.0e-206 723.8 516 73.3
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 3.0e-206 722.2 558 68.3
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 8.8e-206 720.7 557 69.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 2.6e-205 719.2 559 66.5
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 4.8e-204 714.9 558 67.6
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 3.1e-203 712.2 558 67.6
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 6.9e-203 711.1 560 66.1
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 9.1e-203 710.7 557 68.9
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 7.7e-202 707.6 552 65.6
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 3.2e-200 702.2 557 65.7
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 3.9e-198 695.3 515 70.5
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.5e-197 693.3 518 68.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 4.4e-197 691.8 514 68.9
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.4e-195 686.8 553 67.3
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 1.8e-195 686.4 556 65.1
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 2.6e-194 682.6 557 64.8
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 3.6e-191 672.2 463 74.3
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 2.0e-186 656.4 463 72.1
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 6.8e-182 641.3 462 71.6
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 2.6e-181 639.4 463 73.2
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 3.4e-181 639.0 644 54.8
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.2e-176 622.5 419 76.8
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 4.9e-172 608.6 429 71.6
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 4.3e-168 595.5 447 69.1
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.4e-158 563.9 552 53.3
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 2.2e-156 556.6 372 77.7
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 9.2e-155 551.2 372 77.2
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 1.2e-154 550.8 566 53.2
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 5.2e-150 535.4 460 62.6
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 8.9e-142 508.1 344 75.0
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 1.2e-141 507.7 396 65.9
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 2.7e-138 496.5 426 59.6
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 4.6e-138 495.7 428 59.6
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 1.3e-132 477.6 309 79.3
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 6.4e-132 475.3 503 53.9
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 9.6e-112 408.3 553 45.6
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 4.8e-103 379.4 230 84.8
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 2.2e-100 370.5 427 48.0
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 1.5e-59 235.0 309 46.6
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.0e-56 224.6 142 78.2
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.7e-53 214.2 156 70.5
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 2.3e-52 211.1 230 53.0
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 5.6e-51 206.5 317 45.1
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 3.6e-42 177.2 146 61.6
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 8.9e-41 172.6 143 60.8
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 2.2e-39 167.9 308 37.0
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 6.0e-37 159.8 126 67.5
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 1.0e-36 159.1 135 63.0
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 8.6e-36 156.0 93 81.7
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 5.4e-30 136.7 98 71.4
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 2.7e-29 134.4 93 72.0
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 5.1e-28 130.2 91 72.5
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 3.1e-25 120.9 141 48.9
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 1.1e-22 112.5 132 47.0
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 6.0e-21 106.7 140 48.6
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 4.7e-18 97.1 52 88.5
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 6.2e-18 96.7 59 74.6
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 1.8e-17 95.1 172 37.2
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 6.9e-17 93.2 59 71.2
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 9.0e-17 92.8 52 86.5
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 2.0e-16 91.7 52 88.5
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.8e-15 87.4 142 36.6
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 2.4e-14 84.7 73 58.9
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 5.4e-14 83.6 112 45.5
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 9.0e-09 66.2 35 94.3
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 2.6e-08 64.7 54 68.5
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.4e-06 58.9 29 100.0
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 1.4e-06 58.9 29 100.0
MELO3C028166.2 Cucumis melo HOM05D004674 ORTHO05D029175 4.2e-06 57.4 29 96.6
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 9.3e-06 56.2 29 89.7


User provided reference genes

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