Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 5.9e-183 644.0 318 100.0
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 1.1e-131 473.8 298 75.8
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 4.9e-129 464.9 301 74.4
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.6e-127 459.9 286 74.8
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 2.0e-127 459.5 293 72.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.8e-127 457.6 308 71.1
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 7.8e-127 457.6 293 72.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.0e-126 457.2 286 74.5
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.7e-126 456.4 286 74.5
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.3e-126 456.1 321 69.5
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 3.0e-126 455.7 310 70.6
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 8.6e-126 454.1 309 71.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.9e-125 453.0 319 67.4
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.3e-123 446.0 298 70.1
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.4e-122 441.8 299 69.6
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.4e-122 441.8 289 71.6
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 5.8e-122 441.4 313 70.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.3e-121 440.3 312 67.0
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 1.3e-121 440.3 304 67.4
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 2.9e-121 439.1 299 68.9
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 4.9e-121 438.3 302 69.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.9e-121 438.3 312 66.7
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 6.4e-121 438.0 319 65.8
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 3.2e-120 435.6 313 67.7
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.2e-120 435.6 286 71.3
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.2e-119 433.7 284 70.1
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.6e-119 433.3 306 67.3
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 3.5e-119 432.2 293 70.6
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.3e-118 430.3 312 64.4
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.9e-118 428.7 299 66.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.1e-118 428.3 312 67.6
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 3.3e-117 425.6 293 67.9
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 3.3e-117 425.6 310 65.5
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.1e-115 420.6 306 63.4
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.1e-115 420.6 284 68.7
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 5.2e-115 418.3 290 66.6
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.2e-114 417.2 307 64.5
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.5e-114 416.8 310 63.5
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 4.4e-114 415.2 306 63.1
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-113 413.7 303 65.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.4e-112 410.2 329 60.5
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 4.1e-112 408.7 301 65.1
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 4.1e-112 408.7 283 67.5
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 7.1e-112 407.9 309 61.5
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 9.2e-112 407.5 287 64.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.2e-111 407.1 314 63.7
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 1.2e-111 407.1 281 67.6
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 2.1e-111 406.4 327 61.2
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 1.7e-110 403.3 302 61.9
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.7e-110 403.3 287 66.9
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.7e-110 403.3 316 60.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 3.0e-110 402.5 309 61.2
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.9e-110 402.1 286 66.8
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 5.1e-110 401.7 320 60.0
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 8.7e-110 401.0 300 64.3
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.1e-109 400.6 311 60.1
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.3e-109 398.7 311 60.5
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.3e-109 398.7 282 66.7
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 7.3e-109 397.9 283 67.5
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 9.6e-109 397.5 308 61.7
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.2e-108 397.1 309 60.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 1.2e-108 397.1 302 60.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.6e-108 396.7 302 60.6
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 2.8e-108 396.0 311 58.8
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 6.2e-108 394.8 311 59.8
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 8.1e-108 394.4 302 60.6
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 8.1e-108 394.4 256 71.9
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 5.2e-107 391.7 309 59.5
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 6.9e-107 391.3 248 71.8
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 6.9e-107 391.3 248 72.2
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 9.0e-107 391.0 320 61.2
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 1.5e-106 390.2 310 58.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 7.6e-106 387.9 246 72.0
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.3e-105 387.1 291 62.2
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 4.9e-105 385.2 256 69.9
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 6.0e-103 378.3 282 60.6
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.3e-102 377.1 248 70.2
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 5.6e-101 371.7 247 69.2
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 3.6e-100 369.0 246 71.1
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 9.9e-98 360.9 228 73.7
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-97 360.1 289 60.9
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 6.4e-97 358.2 282 59.2
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 7.1e-96 354.8 257 64.2
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 7.1e-96 354.8 284 58.5
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 9.3e-96 354.4 278 59.4
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.1e-95 353.2 335 54.9
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 1.9e-93 346.7 311 54.7
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.9e-93 346.7 312 55.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.6e-93 345.1 312 55.8
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.7e-92 342.4 245 68.2
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.2e-90 337.4 313 56.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.8e-90 335.1 289 58.8
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 3.8e-89 332.4 225 70.7
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.1e-85 320.9 319 53.3
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.2e-79 300.8 282 53.2
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 2.1e-79 300.1 596 33.6
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 6.0e-79 298.5 188 73.4
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.7e-78 295.0 195 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 3.3e-77 292.7 279 47.7
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 9.7e-77 291.2 189 70.9
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.5e-74 283.9 278 49.6
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 1.0e-73 281.2 278 45.3
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.2e-73 280.0 327 46.2
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.5e-72 276.6 303 44.6
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 1.0e-70 271.2 162 75.3
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-66 257.7 156 76.9
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.4e-64 250.8 153 72.5
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 2.0e-58 230.3 266 47.4
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 6.5e-57 225.3 165 65.5
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.5e-57 225.3 240 51.7
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 8.5e-57 224.9 240 52.5
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.6e-55 220.7 166 63.9
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.0e-54 218.0 175 61.1
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.6e-47 194.1 138 68.8
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 3.0e-46 189.9 127 65.4
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 9.1e-43 178.3 112 69.6
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.7e-42 175.3 195 46.7
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.7e-41 174.1 232 42.2
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 6.5e-41 172.2 166 55.4
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 5.5e-40 169.1 286 36.7
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.7e-39 166.8 216 35.6
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.7e-36 157.5 127 61.4
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 2.7e-34 150.2 128 54.7
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.5e-32 143.7 125 60.0
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.5e-29 134.4 102 64.7
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 2.8e-28 130.2 100 63.0
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.4e-27 127.1 74 74.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-18 97.8 67 68.7
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 3.5e-18 96.7 76 55.3
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.7e-17 94.4 76 63.2
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 8.0e-15 85.5 80 55.0
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.6e-13 80.5 99 43.4
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.7e-12 77.8 87 48.3
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 1.1e-06 58.5 40 67.5


User provided reference genes

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