Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 0.0e+00 1137.5 631 100.0
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.0e-298 1029.6 631 88.9
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 9.9e-273 943.3 635 81.9
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 6.8e-266 920.6 632 78.0
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.4e-263 912.9 633 77.7
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.2e-262 909.8 626 78.1
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.3e-259 899.8 632 77.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.3e-259 899.8 633 76.6
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.4e-258 896.3 634 76.8
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.1e-251 872.5 633 74.7
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 4.8e-251 871.3 629 74.6
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.0e-250 867.1 604 76.7
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.2e-249 866.7 629 74.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.6e-249 864.0 629 73.9
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 7.6e-249 864.0 614 75.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 2.2e-248 862.4 633 75.4
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.2e-247 858.6 634 75.6
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.2e-246 856.7 612 74.5
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 8.7e-245 850.5 646 71.7
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.9e-244 849.4 611 73.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 2.5e-244 849.0 633 73.5
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.3e-244 848.2 634 72.6
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 1.6e-243 846.3 611 72.8
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 1.2e-241 840.1 634 73.7
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.2e-241 840.1 634 71.8
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 3.4e-241 838.6 631 71.5
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.0e-240 837.0 634 70.7
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 3.8e-240 835.1 634 71.5
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 4.9e-240 834.7 632 73.9
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 6.5e-240 834.3 623 72.4
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.5e-240 834.3 632 71.8
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 8.4e-240 833.9 634 71.5
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.4e-239 833.2 612 73.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.4e-239 833.2 636 71.2
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 9.3e-239 830.5 634 72.7
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.6e-238 829.7 612 72.4
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-238 829.3 632 70.9
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 2.1e-238 829.3 628 71.7
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 1.0e-237 827.0 627 75.1
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 3.0e-237 825.5 632 70.1
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 6.7e-237 824.3 669 68.8
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.9e-236 822.8 638 71.6
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.3e-236 821.6 613 72.3
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 4.3e-236 821.6 633 70.0
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.8e-235 818.9 633 72.2
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 3.7e-235 818.5 631 70.7
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 8.2e-235 817.4 611 71.8
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.4e-234 816.6 630 71.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 5.3e-234 814.7 649 70.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-233 812.8 632 69.9
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.0e-233 812.8 632 69.9
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.0e-233 812.8 632 69.9
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.0e-232 810.4 633 69.8
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.0e-232 810.4 632 69.3
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.7e-232 809.7 633 69.4
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 2.2e-232 809.3 634 70.2
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-231 806.6 633 70.8
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.4e-231 806.6 633 69.2
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.9e-231 806.2 627 70.5
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 3.2e-231 805.4 631 69.9
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.2e-231 805.1 615 70.9
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 5.5e-231 804.7 634 68.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 5.5e-231 804.7 663 67.7
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 3.5e-230 802.0 631 68.9
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 7.9e-230 800.8 611 70.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-229 799.3 632 69.1
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.0e-229 798.9 630 69.8
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 3.9e-229 798.5 630 67.8
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 6.7e-229 797.7 634 70.2
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.5e-228 796.6 612 69.6
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 4.3e-228 795.0 643 68.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 5.7e-228 794.7 635 68.7
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 5.3e-226 788.1 653 66.5
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.2e-225 786.9 611 69.2
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.5e-225 786.6 636 67.6
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 5.0e-224 781.6 628 68.9
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 5.5e-223 778.1 632 67.9
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 5.5e-223 778.1 632 67.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 6.1e-222 774.6 719 62.9
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.3e-221 772.7 627 67.6
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 3.0e-221 772.3 631 66.2
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 5.1e-221 771.5 626 67.9
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 1.3e-219 766.9 634 68.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.2e-219 766.1 635 67.7
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.2e-219 766.1 635 67.7
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 8.2e-219 764.2 634 68.8
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 1.8e-218 763.1 634 71.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 9.1e-218 760.8 631 67.4
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.2e-217 760.4 630 65.9
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 7.7e-217 757.7 605 70.6
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 7.7e-217 757.7 535 76.1
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 1.3e-216 756.9 640 66.1
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 8.5e-216 754.2 541 72.5
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.2e-214 750.4 635 66.3
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-213 746.1 614 67.4
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.7e-213 744.6 629 64.2
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 8.8e-213 744.2 629 65.3
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.6e-212 742.7 633 64.8
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 2.2e-211 739.6 641 64.0
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.5e-209 732.3 625 66.6
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.0e-208 730.7 504 75.2
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.6e-206 722.2 631 61.8
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 6.1e-206 721.5 638 62.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 7.4e-204 714.5 640 64.5
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.5e-199 700.3 558 66.8
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 5.5e-199 698.4 607 65.7
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 9.8e-196 687.6 629 60.7
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 3.1e-194 682.6 638 61.0
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.5e-191 672.9 638 59.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.1e-190 669.8 506 73.3
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 5.7e-188 661.8 631 59.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-182 643.3 610 60.8
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 3.0e-181 639.4 510 68.8
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 5.7e-180 635.2 511 69.5
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.8e-177 624.8 637 57.6
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.2e-174 615.1 481 67.8
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 4.4e-172 609.0 505 65.5
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 3.4e-164 582.8 617 55.8
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 6.8e-157 558.5 422 72.7
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 4.1e-154 549.3 630 54.1
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 9.2e-154 548.1 415 72.8
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 2.6e-148 530.0 452 63.5
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 7.6e-148 528.5 623 47.7
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 4.9e-147 525.8 406 72.4
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.3e-144 517.7 517 55.7
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.5e-143 514.2 472 62.3
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 6.6e-136 488.8 646 44.6
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.4e-125 454.5 410 60.5
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 7.1e-122 442.2 334 70.4
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.1e-119 434.9 594 44.8
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-114 416.4 417 55.6
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.8e-112 411.0 293 78.2
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 2.9e-107 393.7 619 41.8
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.0e-88 330.5 315 58.4
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 5.7e-71 273.1 190 71.6
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 9.8e-71 272.3 642 34.4
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.7e-70 271.6 329 53.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 6.6e-67 259.6 224 61.6
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.0e-64 252.3 188 69.7
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 3.4e-63 247.3 210 59.5
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 1.3e-62 245.4 706 32.0
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.7e-60 237.7 170 79.4
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-58 231.5 167 68.9
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 7.3e-58 229.6 202 60.4
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.2e-53 214.2 212 59.0
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 2.0e-52 211.5 169 73.4
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 4.6e-52 210.3 155 67.7
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-51 208.8 155 67.7
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.6e-51 206.1 179 60.9
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 3.6e-49 200.7 640 30.3
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 6.8e-48 196.4 179 58.1
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.4e-45 188.7 128 75.8
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 3.3e-42 177.6 117 76.9
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 1.1e-37 162.5 173 54.3
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 3.5e-36 157.5 136 68.4
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 8.6e-35 152.9 148 56.8
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.8e-33 147.9 187 46.5
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-30 138.7 92 77.2
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-30 138.7 92 77.2
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-30 138.7 92 77.2
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 6.0e-28 130.2 92 73.9
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.1e-24 119.4 90 62.2
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.5e-23 115.5 97 68.0
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.6e-23 113.2 91 67.0
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-20 105.5 80 82.5
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.6e-20 104.0 94 55.3
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-19 102.1 80 68.8
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 3.0e-19 101.3 97 51.5
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.9e-18 98.6 94 52.1
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.8e-16 92.0 131 46.6
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 7.6e-15 86.7 61 68.9
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 9.9e-15 86.3 84 51.2
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-14 85.5 58 70.7
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 8.4e-14 83.2 72 52.8
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.6e-12 79.0 82 50.0
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.9e-12 76.6 49 69.4
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 1.1e-08 66.2 48 75.0
Nitab4.5_0004750g0060 Nicotiana tabacum HOM05D003777 ORTHO05D012379 2.0e-07 62.0 49 53.1
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.6e-07 61.6 47 59.6
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 4.5e-07 60.8 47 61.7
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 1.7e-06 58.9 50 56.0
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 2.2e-06 58.5 623 21.8
Actinidia09282 Actinidia chinensis HOM05D003777 ORTHO05D004690 3.8e-06 57.8 231 27.7


User provided reference genes

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