Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 7.5e-106 387.5 242 100.0
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.8e-99 366.3 205 93.2
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 3.8e-89 332.0 205 83.9
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 2.7e-87 325.9 205 82.4
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.5e-87 325.5 202 84.2
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 6.0e-87 324.7 202 84.2
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 2.3e-86 322.8 205 81.0
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 2.3e-86 322.8 205 82.0
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 5.1e-86 321.6 205 82.0
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 8.7e-86 320.9 203 81.8
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 1.1e-85 320.5 205 81.5
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 1.1e-85 320.5 205 81.0
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.9e-85 319.7 202 81.7
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.9e-85 319.7 203 81.3
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.5e-85 319.3 205 81.5
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 5.6e-85 318.2 205 81.0
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 5.6e-85 318.2 205 81.5
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 5.6e-85 318.2 205 80.0
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 9.6e-85 317.4 200 81.5
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 2.1e-84 316.2 203 80.3
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 205 80.5
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.8e-84 315.8 205 80.5
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 2.8e-84 315.8 202 80.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.6e-84 315.5 202 81.2
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 3.6e-84 315.5 202 81.2
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 4.8e-84 315.1 202 80.2
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 6.2e-84 314.7 205 79.5
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 6.2e-84 314.7 203 80.3
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 8.1e-84 314.3 202 81.2
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 8.1e-84 314.3 205 81.0
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.1e-83 313.9 202 81.2
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.4e-83 313.5 202 81.2
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 1.8e-83 313.2 205 79.5
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 2.4e-83 312.8 200 81.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 204 79.9
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.4e-83 312.8 204 79.4
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.4e-83 312.8 205 79.5
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 2.4e-83 312.8 205 80.5
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 4.0e-83 312.0 205 79.0
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.0e-83 312.0 205 80.5
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 6.9e-83 311.2 205 79.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 6.9e-83 311.2 202 79.7
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 9.0e-83 310.8 205 78.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 9.0e-83 310.8 205 79.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.2e-82 310.5 200 79.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 2.0e-82 309.7 189 86.2
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.6e-82 309.3 205 78.5
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 3.4e-82 308.9 203 81.3
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 3.4e-82 308.9 205 79.0
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 4.4e-82 308.5 202 80.7
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 7.6e-82 307.8 205 78.5
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 7.6e-82 307.8 201 79.6
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 9.9e-82 307.4 205 75.6
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 1.7e-81 306.6 205 78.0
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.7e-81 306.6 200 79.0
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 2.2e-81 306.2 205 77.6
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 205 78.0
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-81 305.8 203 79.3
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.9e-81 305.8 202 78.2
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.9e-81 305.8 205 77.6
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 4.9e-81 305.1 204 77.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 6.4e-81 304.7 206 79.1
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 6.4e-81 304.7 203 78.8
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 6.4e-81 304.7 209 77.5
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.1e-80 303.9 203 78.3
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.1e-80 303.9 201 79.1
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 1.1e-80 303.9 205 75.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.4e-80 303.5 201 78.6
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.4e-80 303.5 204 77.0
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.9e-80 303.1 196 81.6
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 1.9e-80 303.1 198 79.8
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.4e-80 302.8 203 78.3
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 5.4e-80 301.6 206 78.2
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 5.4e-80 301.6 204 76.5
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 5.4e-80 301.6 195 80.0
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 5.4e-80 301.6 205 77.1
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 7.1e-80 301.2 190 83.7
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-79 300.4 204 77.0
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-79 300.4 204 77.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-79 300.4 204 77.0
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.6e-79 300.1 207 74.9
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.6e-79 300.1 203 77.3
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.1e-79 299.7 203 77.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 2.1e-79 299.7 205 76.1
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 3.5e-79 298.9 206 76.7
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 4.6e-79 298.5 205 75.6
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.3e-78 297.0 207 73.9
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.3e-78 296.2 207 73.4
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.0e-78 295.8 205 74.6
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 3.9e-78 295.4 203 77.8
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.7e-78 294.3 203 74.9
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 2.5e-77 292.7 205 74.6
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 2.5e-77 292.7 207 73.4
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 4.3e-77 292.0 203 75.4
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.6e-77 291.6 205 74.6
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 5.6e-77 291.6 207 73.4
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 7.3e-77 291.2 207 72.9
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 7.3e-77 291.2 207 72.9
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 7.3e-77 291.2 207 72.5
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 9.6e-77 290.8 197 77.2
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.3e-76 290.4 203 73.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 3.6e-76 288.9 199 75.9
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 6.2e-76 288.1 203 73.9
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 8.1e-76 287.7 207 72.0
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 8.1e-76 287.7 207 72.0
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 1.4e-75 287.0 203 73.4
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 5.3e-75 285.0 208 72.1
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.3e-75 285.0 204 73.0
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 9.0e-75 284.3 188 76.6
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.2e-73 279.6 203 71.4
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.8e-73 278.9 190 74.2
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 1.9e-72 276.6 203 74.4
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 5.4e-72 275.0 203 70.0
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.2e-71 273.9 203 70.9
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 2.1e-71 273.1 183 76.5
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 3.5e-71 272.3 203 71.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.8e-70 270.0 205 67.3
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.3e-70 269.6 203 70.0
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 3.3e-69 265.8 203 69.0
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 5.6e-69 265.0 203 68.0
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 2.0e-66 256.5 200 66.5
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.5e-66 255.4 190 70.0
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.8e-66 255.0 177 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 1.0e-65 254.2 190 70.0
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 3.7e-60 235.7 165 74.5
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 1.1e-59 234.2 190 64.7
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 4.6e-55 218.8 205 61.5
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 7.9e-55 218.0 190 63.2
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 3.1e-51 206.1 205 57.1
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 2.0e-45 186.8 133 72.2
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.3e-45 186.0 133 75.2
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 1.5e-42 177.2 111 77.5
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 9.4e-40 167.9 205 52.2
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 2.1e-39 166.8 174 52.3
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 2.8e-36 156.4 171 49.7
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 2.7e-31 139.8 100 67.0
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 1.4e-27 127.5 182 41.2
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.0e-25 121.3 86 67.4
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 5.0e-25 119.0 91 68.1
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 3.2e-16 89.7 181 30.9
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 5.5e-16 89.0 53 88.7
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 2.3e-14 83.6 53 81.1
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 4.4e-13 79.3 56 71.4
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 4.1e-11 72.8 180 29.4


User provided reference genes

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