Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI59G0781 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 3.6e-139 498.8 371 100.0
TWI23G0375 Tripterygium wilfordii HOM05D005383 ORTHO05D006722 5.0e-125 451.8 371 89.5
CiPaw.05G051100 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.0e-98 364.4 375 76.3
QL02p099934 Quercus lobata HOM05D005383 ORTHO05D006722 1.3e-96 357.5 367 77.9
Thecc.02G025800 Theobroma cacao HOM05D005383 ORTHO05D006722 2.9e-96 356.3 369 78.6
Duzib248G0552 Durio zibethinus HOM05D005383 ORTHO05D006722 6.4e-96 355.1 369 63.1
Ciclev10001534m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-94 350.9 375 74.4
COL.COLO4_17761 Corchorus olitorius HOM05D005383 ORTHO05D006722 2.7e-94 349.7 370 62.7
Gohir.D01G173100 Gossypium hirsutum HOM05D005383 ORTHO05D006722 1.0e-93 347.8 369 76.2
Gorai.002G214700 Gossypium raimondii HOM05D005383 ORTHO05D006722 3.0e-93 346.3 369 75.9
CANSAT54G1323 Cannabis sativa HOM05D005383 ORTHO05D006722 3.9e-93 345.9 377 73.2
Gohir.A01G182000 Gossypium hirsutum HOM05D005383 ORTHO05D006722 3.9e-93 345.9 369 76.2
GSVIVG01023286001 Vitis vinifera HOM05D005383 ORTHO05D006722 8.6e-93 344.7 375 74.4
Haze_01820 Corylus avellana HOM05D005383 ORTHO05D006722 1.9e-92 343.6 396 61.4
Cpa.g.sc161.1 Carica papaya HOM05D005383 ORTHO05D006722 2.5e-92 343.2 369 76.7
Atru.chr6.733 Acer truncatum HOM05D005383 ORTHO05D006722 9.5e-92 341.3 374 75.4
Ciclev10003783m.g Citrus clementina HOM05D005383 ORTHO05D006722 1.2e-91 340.9 375 73.9
Potri.003G010400 Populus trichocarpa HOM05D005383 ORTHO05D006722 1.2e-91 340.9 355 76.6
Ca_00052_v3 Cicer arietinum L. HOM05D005383 ORTHO05D006722 1.6e-91 340.5 376 71.5
Eucgr.G00356 Eucalyptus grandis HOM05D005383 ORTHO05D006722 3.6e-91 339.3 376 75.5
CSS0013900 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.0e-90 337.8 373 75.6
CSS0016011 Camellia sinensis var. sinensis HOM05D005383 ORTHO05D006722 1.0e-90 337.8 373 75.6
MD08G1239600 Malus domestica HOM05D005383 ORTHO05D006722 1.8e-90 337.0 378 72.8
Manes.10G120600 Manihot esculenta HOM05D005383 ORTHO05D006722 8.9e-90 334.7 371 78.4
Prupe.1G576100 Prunus persica HOM05D005383 ORTHO05D006722 1.2e-89 334.3 371 65.8
arahy.Tifrunner.gnm1.ann1.UJ0XJV Arachis hypogaea HOM05D005383 ORTHO05D006722 4.4e-89 332.4 368 75.8
Potri.004G221700 Populus trichocarpa HOM05D005383 ORTHO05D006722 9.8e-89 331.3 357 77.3
Psat1g221920 Pisum sativum HOM05D005383 ORTHO05D006722 1.1e-87 327.8 376 72.6
TPR.G2110 Trifolium pratense HOM05D005383 ORTHO05D006722 3.2e-87 326.2 379 74.4
Sed0026787 Sechium edule HOM05D005383 ORTHO05D006722 7.0e-87 325.1 374 70.3
Nn5g27588 Nelumbo nucifera HOM05D005383 ORTHO05D006722 2.0e-86 323.6 367 73.6
CiPaw.06G143700 Carya illinoinensis HOM05D005383 ORTHO05D006722 1.0e-85 321.2 374 62.3
RcHm_v2.0_Chr7g0220861 Rosa chinensis HOM05D005383 ORTHO05D006722 8.6e-85 318.2 372 72.0
EL10Ac2g02705 Beta vulgaris HOM05D005383 ORTHO05D006722 1.1e-84 317.8 368 73.9
Glyma.08G126300 Glycine max HOM05D005383 ORTHO05D006722 9.5e-84 314.7 377 70.8
MELO3C011837.2 Cucumis melo HOM05D005383 ORTHO05D006722 1.6e-83 313.9 374 73.3
FAN13G0305 Fragaria x ananassa HOM05D005383 ORTHO05D006722 1.6e-83 313.9 393 67.9
FAN08G2879 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.1e-83 313.5 370 70.8
Phvul.002G248200 Phaseolus vulgaris HOM05D005383 ORTHO05D006722 2.1e-83 313.5 377 69.8
FvH4_5g28700 Fragaria vesca HOM05D005383 ORTHO05D006722 2.8e-83 313.2 370 70.8
Lalb_Chr13g0295611 Lupinus albus HOM05D005383 ORTHO05D006722 2.8e-83 313.2 382 73.6
Hund12945 Selenicereus undatus HOM05D005383 ORTHO05D006722 4.7e-83 312.4 369 65.9
CsaV3_5G029920 Cucumis sativus L. HOM05D005383 ORTHO05D006722 1.1e-82 311.2 374 72.2
Lj4g0022432 Lotus japonicus HOM05D005383 ORTHO05D006722 1.1e-82 311.2 373 73.7
VMungo0251G3735 Vigna mungo HOM05D005383 ORTHO05D006722 1.1e-82 311.2 377 70.0
Glyma.05G167900 Glycine max HOM05D005383 ORTHO05D006722 1.4e-82 310.8 376 70.5
Sed0022153 Sechium edule HOM05D005383 ORTHO05D006722 1.4e-82 310.8 373 71.0
Rhsim11G0125900 Rhododendron simsii HOM05D005383 ORTHO05D006722 2.6e-81 306.6 364 72.8
Lalb_Chr07g0185851 Lupinus albus HOM05D005383 ORTHO05D006722 5.8e-81 305.4 382 69.1
Dinv01847 Davidia involucrata HOM05D005383 ORTHO05D006722 9.8e-81 304.7 360 71.1
Cc02_g22940 Coffea canephora HOM05D005383 ORTHO05D006722 1.9e-79 300.4 374 70.6
vmacro01730 Vaccinium macrocarpon HOM05D005383 ORTHO05D006722 1.9e-79 300.4 374 75.4
Nitab4.5_0009812g0010 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.1e-78 297.0 363 71.1
TAR628G0519 Trochodendron aralioides HOM05D005383 ORTHO05D006722 2.7e-78 296.6 367 68.1
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 4.6e-78 295.8 342 72.5
Nitab4.5_0000548g0200 Nicotiana tabacum HOM05D005383 ORTHO05D006722 2.3e-77 293.5 375 70.1
THA.LOC104801420 Tarenaya hassleriana HOM05D005383 ORTHO05D006722 3.9e-77 292.7 390 71.0
MSTRG.5117 Avicennia marina HOM05D005383 ORTHO05D006722 5.1e-77 292.4 373 66.5
TAR381G0956 Trochodendron aralioides HOM05D005383 ORTHO05D006722 1.9e-76 290.4 369 68.3
DCAR_025351 Daucus carota HOM05D005383 ORTHO05D006722 3.3e-76 289.7 344 69.8
PGR042G1418 Punica granatum HOM05D005383 ORTHO05D006722 3.3e-76 289.7 386 66.8
Solyc03g083310.4 Solanum lycopersicum HOM05D005383 ORTHO05D006722 4.3e-76 289.3 373 65.7
Hma1.2p1_1108F.1_g257860 Hydrangea macrophylla HOM05D005383 ORTHO05D006722 1.2e-75 287.7 371 70.9
PGSC0003DMG400009082 Solanum tuberosum HOM05D005383 ORTHO05D006722 1.6e-75 287.3 368 66.3
Sp6g13330 Schrenkiella parvula HOM05D005383 ORTHO05D006722 6.2e-75 285.4 361 72.9
Sabra03G0005300 Salix brachista HOM05D005383 ORTHO05D006722 1.2e-73 281.2 486 40.5
BraSC35t46002Z Brassica rapa HOM05D005383 ORTHO05D006722 2.0e-73 280.4 368 69.0
BcaC04g20728 Brassica carinata HOM05D005383 ORTHO05D006722 2.6e-73 280.0 368 69.0
BolC9t56882H Brassica oleracea HOM05D005383 ORTHO05D006722 2.6e-73 280.0 368 69.0
CAN.G968.1 Capsicum annuum HOM05D005383 ORTHO05D006722 4.4e-73 279.3 361 70.6
A10p07980 Brassica napus HOM05D005383 ORTHO05D006722 2.2e-72 276.9 368 68.5
AL6G41240 Arabidopsis lyrata HOM05D005383 ORTHO05D006722 1.4e-71 274.2 392 69.1
Ciclev10003892m.g Citrus clementina HOM05D005383 ORTHO05D006722 3.2e-71 273.1 334 63.8
Thhalv10028723m.g Eutrema salsugineum HOM05D005383 ORTHO05D006722 4.1e-71 272.7 383 71.0
AT4G06634 Arabidopsis thaliana HOM05D005383 ORTHO05D006722 2.7e-70 270.0 386 68.7
Carub.0006s2631 Capsella rubella HOM05D005383 ORTHO05D006722 4.6e-70 269.2 384 69.5
Sopen03g023060 Solanum pennellii HOM05D005383 ORTHO05D006722 1.0e-69 268.1 372 64.0
Migut.B00804 Erythranthe guttata HOM05D005383 ORTHO05D006722 3.9e-69 266.2 357 70.0
arahy.Tifrunner.gnm1.ann1.E4SRBI Arachis hypogaea HOM05D005383 ORTHO05D006722 4.3e-68 262.7 348 73.0
arahy.Tifrunner.gnm1.ann1.I6AGPX Arachis hypogaea HOM05D005383 ORTHO05D006722 5.6e-68 262.3 348 73.0
C09p39820 Brassica napus HOM05D005383 ORTHO05D006722 5.6e-68 262.3 365 68.2
Lj9A301T38 Lonicera japonica HOM05D005383 ORTHO05D006722 1.2e-67 261.2 356 71.6
CARHR260070 Cardamine hirsuta HOM05D005383 ORTHO05D006722 1.6e-67 260.8 388 69.6
Aa31LG3G14030 Aethionema arabicum HOM05D005383 ORTHO05D006722 1.8e-66 257.3 389 67.1
A03p16300 Brassica napus HOM05D005383 ORTHO05D006722 9.9e-65 251.5 378 62.4
C03p19190 Brassica napus HOM05D005383 ORTHO05D006722 9.9e-65 251.5 377 62.3
PSO063G2254 Papaver somniferum HOM05D005383 ORTHO05D006722 9.9e-65 251.5 372 64.0
CDE08G1140 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.7e-64 250.8 369 63.4
Lsat_1_v5_gn_4_6600 Lactuca sativa HOM05D005383 ORTHO05D006722 1.7e-64 250.8 384 63.0
SGA_v2.0_scaffold42G15921 Striga asiatica HOM05D005383 ORTHO05D006722 2.9e-64 250.0 384 63.0
BcaB08g35467 Brassica carinata HOM05D005383 ORTHO05D006722 8.4e-64 248.4 368 64.9
Aqoxy6G00141 Aquilegia oxysepala HOM05D005383 ORTHO05D006722 1.1e-63 248.1 336 67.6
PSO017G2626 Papaver somniferum HOM05D005383 ORTHO05D006722 5.4e-63 245.7 371 63.3
HanXRQChr08g0209021 Helianthus annuus HOM05D005383 ORTHO05D006722 9.3e-63 245.0 341 66.6
BolC3t14307H Brassica oleracea HOM05D005383 ORTHO05D006722 6.0e-62 242.3 391 49.9
CDE02G2650 Ceratophyllum demersum HOM05D005383 ORTHO05D006722 1.0e-61 241.5 369 62.3
BraA03t10921Z Brassica rapa HOM05D005383 ORTHO05D006722 1.1e-60 238.0 390 50.8
BcaC01g06075 Brassica carinata HOM05D005383 ORTHO05D006722 1.3e-59 234.6 375 62.9
ECA233G1887 Erigeron canadensis HOM05D005383 ORTHO05D006722 5.3e-58 229.2 370 61.9
HanXRQChr04g0103661 Helianthus annuus HOM05D005383 ORTHO05D006722 2.6e-57 226.9 386 59.3
BcaC01g06099 Brassica carinata HOM05D005383 ORTHO05D006722 2.9e-56 223.4 373 59.2
Actinidia00189 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.2e-54 218.0 255 76.9
Oeu036675.1 Olea europaea HOM05D005383 ORTHO05D006722 7.9e-54 215.3 320 66.9
MSTRG.16504 Avicennia marina HOM05D005383 ORTHO05D006722 1.8e-53 214.2 319 66.8
unitig_699.g19853 Utricularia gibba HOM05D005383 ORTHO05D006722 1.9e-52 210.7 383 41.3
Sc07g0004970 Simmondsia chinensis HOM05D005383 ORTHO05D006722 2.6e-49 200.3 330 68.2
Lsat_1_v5_gn_8_160061 Lactuca sativa HOM05D005383 ORTHO05D006722 1.3e-48 198.0 264 70.8
HPP92_013744 Vanilla planifolia HOM05D006763 ORTHO05D008659 2.1e-46 190.7 308 63.0
Sabra01G0167800 Salix brachista HOM05D005383 ORTHO05D006722 2.7e-46 190.3 166 68.7
HPP92_009272 Vanilla planifolia HOM05D005383 ORTHO05D006722 7.9e-46 188.7 361 56.5
ATR0071G030 Amborella trichopoda HOM05D005383 ORTHO05D006722 6.7e-45 185.7 326 62.9
AUR62041111 Chenopodium quinoa HOM05D005383 ORTHO05D006722 6.2e-43 179.1 181 60.2
MD15G1431100 Malus domestica HOM05D005383 ORTHO05D006722 6.9e-42 175.6 300 61.7
Peaxi162Scf03254g00012 Petunia axillaris HOM05D005383 ORTHO05D006722 1.3e-40 171.4 164 60.4
Os02g0551900 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 1.1e-39 168.3 357 56.6
unitig_747.g21262 Utricularia gibba HOM05D005383 ORTHO05D006722 7.1e-39 165.6 367 54.2
ClCG11G013400 Citrullus lanatus HOM05D005383 ORTHO05D006722 2.1e-38 164.1 132 81.8
Zm00001eb181970 Zea mays HOM05D005383 ORTHO05D006722 5.1e-37 159.5 309 57.3
FAN04G2588 Fragaria x ananassa HOM05D005383 ORTHO05D006722 7.4e-36 155.6 127 74.8
Zm00001eb243510 Zea mays HOM05D005383 ORTHO05D006722 2.1e-35 154.1 302 58.6
Zm00001eb267130 Zea mays HOM05D005383 ORTHO05D006722 2.1e-35 154.1 370 53.8
Actinidia39015 Actinidia chinensis HOM05D005383 ORTHO05D006722 1.4e-34 151.4 123 75.6
Os05g0106000 Oryza sativa ssp. japonica HOM05D005383 ORTHO05D006722 9.0e-34 148.7 377 49.3
CAN.G982.21 Capsicum annuum HOM05D005383 ORTHO05D006722 3.2e-31 140.2 176 52.8
FAN18G2475 Fragaria x ananassa HOM05D005383 ORTHO05D006722 2.6e-25 120.6 127 63.0
Mapoly0095s0037 Marchantia polymorpha HOM05D005383 ORTHO05D006722 2.2e-24 117.5 334 52.7
AagrBONN_evm.TU.Sc2ySwM_228.1706 Anthoceros agrestis HOM05D005383 ORTHO05D006722 1.4e-23 114.8 237 62.9
CBR_g52462 Chara braunii HOM05D005383 ORTHO05D006722 3.2e-23 113.6 256 59.0
SEGI_13518 Sequoiadendron giganteum HOM05D005383 ORTHO05D006722 3.3e-20 103.6 115 60.0
SMO347G0081 Selaginella moellendorffii HOM05D005383 ORTHO05D006722 6.9e-18 95.9 226 54.4
ATR0071G005 Amborella trichopoda HOM05D005383 ORTHO05D006722 1.5e-17 94.7 96 54.2
Pp3c7_7980 Physcomitrium patens HOM05D005383 ORTHO05D006722 1.0e-16 92.0 343 48.7
Peaxi162Scf00003g03953 Petunia axillaris HOM05D000011 ORTHO05D011267 1.7e-16 91.3 155 39.4
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.7e-11 74.7 58 81.0
arahy.Tifrunner.gnm1.ann1.0L29ML Arachis hypogaea HOM05D005383 ORTHO05D006722 2.8e-11 73.9 55 85.5
arahy.Tifrunner.gnm1.ann1.XX0GIY Arachis hypogaea HOM05D005383 ORTHO05D006722 1.4e-10 71.6 55 83.6
arahy.Tifrunner.gnm1.ann1.VA1YNF Arachis hypogaea HOM05D005383 ORTHO05D006722 5.0e-08 63.2 84 63.1


User provided reference genes

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