Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 0.0e+00 1163.7 630 100.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.4e-180 636.3 543 60.8
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.1e-176 623.2 562 61.2
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 6.8e-175 618.2 541 62.3
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 9.9e-174 614.4 574 59.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 9.9e-174 614.4 551 59.2
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 4.1e-172 609.0 548 62.2
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 5.4e-172 608.6 569 61.0
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 7.8e-171 604.7 550 60.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.9e-169 600.1 595 57.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 6.8e-167 591.7 552 55.3
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.3e-165 587.4 565 55.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.8e-165 585.9 590 55.6
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 7.8e-163 578.2 541 58.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.0e-162 577.8 574 56.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 3.3e-161 572.8 602 55.3
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.3e-161 572.8 534 55.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.8e-159 567.0 586 51.9
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.0e-159 565.8 553 56.1
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 4.0e-159 565.8 576 55.4
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.9e-157 559.7 531 57.1
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.7e-154 550.4 545 53.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 3.0e-154 549.7 558 52.9
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 6.6e-154 548.5 584 50.2
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-153 546.6 560 52.3
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 4.3e-153 545.8 585 53.2
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.6e-153 545.4 560 52.1
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.6e-153 545.4 560 52.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.3e-152 544.3 520 56.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 6.2e-152 542.0 560 52.1
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.4e-151 540.8 515 54.8
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.1e-151 539.7 535 52.5
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 2.0e-150 537.0 521 54.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.6e-147 527.3 565 55.2
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.0e-147 525.4 557 53.1
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.3e-146 523.5 561 52.6
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 2.3e-146 523.5 565 53.1
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 3.9e-146 522.7 611 51.7
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 5.1e-146 522.3 563 53.5
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.4e-143 514.2 516 50.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.1e-143 513.1 568 51.2
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 2.6e-142 510.0 530 55.3
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.7e-141 507.3 581 47.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 7.1e-140 501.9 545 54.1
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.8e-138 497.3 573 51.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.5e-137 494.2 545 50.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 3.3e-137 493.0 599 49.9
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 3.3e-137 493.0 538 54.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 7.4e-137 491.9 578 51.6
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.3e-136 491.1 578 51.2
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 6.9e-135 485.3 533 50.8
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.2e-134 484.6 521 48.8
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.9e-132 477.2 565 52.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-132 476.9 538 49.4
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 3.2e-132 476.5 575 47.8
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 4.2e-132 476.1 561 51.9
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 5.7e-129 465.7 561 51.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 5.7e-129 465.7 559 49.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 8.2e-128 461.8 537 52.3
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 8.2e-128 461.8 568 45.8
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 4.1e-127 459.5 520 47.1
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.3e-127 459.1 531 44.8
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 2.6e-126 456.8 553 49.4
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.9e-126 455.7 426 62.0
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 7.7e-126 455.3 552 50.9
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.2e-124 449.9 581 47.5
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 9.4e-124 448.4 581 49.9
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 6.1e-123 445.7 577 43.3
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 3.0e-122 443.4 560 45.4
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.8e-120 436.0 552 48.7
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.3e-120 435.6 566 46.8
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.1e-119 434.9 469 52.5
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 9.1e-119 431.8 396 56.6
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 9.1e-119 431.8 547 46.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 6.5e-117 425.6 420 60.5
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.5e-116 422.5 579 48.7
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.3e-109 401.4 550 43.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.2e-108 396.4 527 47.6
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.6e-107 393.3 529 42.2
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.4e-106 391.3 380 61.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.0e-106 390.2 355 55.5
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 5.2e-106 389.4 500 43.0
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 7.5e-105 385.6 552 44.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 3.1e-103 380.2 397 52.1
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 4.1e-103 379.8 466 53.0
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 7.0e-103 379.0 493 45.4
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.1e-99 367.5 535 45.6
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.8e-96 357.1 539 41.2
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.0e-93 346.3 547 38.0
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 2.5e-92 344.0 342 52.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 5.2e-90 336.3 509 38.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.4e-89 333.6 475 45.5
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 5.7e-89 332.8 517 37.3
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.3e-88 331.6 559 37.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.1e-83 314.3 508 36.8
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 7.5e-81 305.8 246 62.6
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.9e-80 303.9 353 48.4
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 9.2e-71 272.3 609 31.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 2.1e-67 261.2 311 47.9
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.3e-66 257.7 254 53.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 5.2e-66 256.5 661 30.3
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 6.8e-66 256.1 307 44.6
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.6e-65 254.2 240 52.9
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.1e-59 234.6 348 39.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 6.9e-50 203.0 307 46.9
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 6.4e-48 196.4 147 61.9
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 9.3e-47 192.6 120 69.2
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 5.1e-45 186.8 151 61.6
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 7.3e-44 183.0 200 57.0
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 2.4e-42 177.9 708 25.0
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.9e-40 171.0 112 67.9
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 3.3e-36 157.5 141 50.4
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.8e-35 154.5 114 59.6
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.4e-34 151.4 119 61.3
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 3.1e-34 151.0 113 61.1
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.5e-33 147.1 117 58.1
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.8e-33 146.7 111 60.4
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 5.8e-33 146.7 107 63.6
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 7.6e-33 146.4 101 63.4
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 6.4e-32 143.3 89 64.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 4.0e-26 124.0 107 56.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 4.5e-25 120.6 145 47.6
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 1.7e-24 118.6 99 53.5
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-24 118.6 119 49.6
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 3.8e-24 117.5 90 55.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.1e-23 113.2 81 60.5
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.8e-21 108.6 469 24.7
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 2.3e-21 108.2 76 60.5
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 3.0e-21 107.8 69 60.9
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 5.1e-21 107.1 92 57.6
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.3e-20 104.4 85 47.1
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 1.3e-19 102.4 88 58.0
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.4e-18 98.2 94 54.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 5.9e-17 93.6 148 37.2
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 2.1e-14 85.1 87 44.8
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.0e-13 82.8 69 50.7
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.9e-13 80.9 68 50.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 8.7e-13 79.7 70 48.6
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.5e-12 79.0 96 44.8
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-12 79.0 73 45.2
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.7e-12 76.3 104 37.5
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.7e-12 76.3 104 37.5
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.8e-11 74.7 70 45.7
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.1e-10 71.2 206 26.2
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 5.3e-10 70.5 45 73.3
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.2e-09 69.3 63 49.2
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.0e-09 68.6 63 60.3
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-09 68.6 46 58.7
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.7e-09 66.6 111 30.6
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.7e-08 65.5 47 59.6
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 6.5e-08 63.5 54 57.4
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 1.9e-07 62.0 44 59.1
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 2.5e-07 61.6 55 60.0
Cre07.g350450 Chlamydomonas reinhardtii HOM05D004644 ORTHO05D000230 2.7e-06 58.2 194 27.3
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 3.6e-06 57.8 42 59.5


User provided reference genes

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