Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 100.0
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 6.7e-99 364.0 183 100.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 2.2e-97 359.0 183 98.4
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 88.5
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.2e-89 332.4 183 87.4
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 86.9
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.8e-89 331.3 183 86.9
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 86.9
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 85.2
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 84.7
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 2.4e-88 328.9 181 87.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 86.9
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 4.1e-88 328.2 183 85.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 86.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 5.4e-88 327.8 183 85.8
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.2e-87 326.6 183 84.2
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 85.8
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.7e-87 325.5 183 86.3
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 4.5e-87 324.7 181 85.1
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 5.9e-87 324.3 183 86.3
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 7.7e-87 323.9 183 85.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.3e-86 323.2 183 84.2
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 2.9e-86 322.0 183 84.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 84.2
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 84.7
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 8.6e-86 320.5 183 85.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.1e-85 320.1 183 83.1
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 83.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 82.5
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 84.7
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.5e-85 317.8 183 84.2
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 9.5e-85 317.0 183 82.5
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.2e-84 316.6 183 82.5
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 83.1
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.6e-84 316.2 183 82.5
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.1
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 2.1e-84 315.8 182 81.9
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 82.0
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 82.0
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 2.8e-84 315.5 183 82.0
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 3.6e-84 315.1 181 81.8
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 81.4
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 82.5
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 4.7e-84 314.7 183 82.0
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.1e-84 314.3 190 81.1
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.0e-83 313.5 183 82.5
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 1.8e-83 312.8 183 80.3
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 83.1
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 80.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 5.2e-83 311.2 183 78.7
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.8e-83 310.8 181 80.7
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 78.7
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 8.9e-83 310.5 183 79.2
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 80.1
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 79.8
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 79.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 81.4
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 80.3
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.8
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 79.8
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 4.4e-82 308.1 181 80.7
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.2
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 5.7e-82 307.8 183 79.2
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 80.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 79.0
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 79.8
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 78.1
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 78.1
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 78.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 78.5
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 78.5
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 78.7
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 3.7e-81 305.1 181 77.9
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 78.1
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 78.5
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 78.1
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 77.6
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.1e-80 303.5 183 79.8
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 77.9
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.8e-80 302.8 181 77.3
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 78.7
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 183 79.2
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 77.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 80.9
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.6e-79 299.7 183 77.6
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 3.5e-79 298.5 181 77.3
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 77.0
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 5.9e-79 297.7 181 77.3
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.0e-78 297.0 181 76.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 77.6
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 76.2
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.9e-78 295.4 183 77.0
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 3.8e-78 295.0 181 76.2
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 76.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 9.5e-77 290.4 183 76.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 9.5e-77 290.4 184 73.4
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.8e-76 288.9 228 65.4
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 3.6e-76 288.5 184 75.0
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 6.1e-76 287.7 184 72.8
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 1.8e-75 286.2 182 76.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 8.9e-75 283.9 183 74.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.5e-74 283.1 183 73.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 2.6e-74 282.3 184 73.4
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 3.4e-74 282.0 183 71.6
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 73.8
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.7e-73 279.6 183 71.6
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 3.7e-73 278.5 184 71.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.7e-73 278.5 181 72.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 4.1e-72 275.0 219 66.7
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 1.0e-70 270.4 183 76.5
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.7e-70 269.6 155 79.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.7e-70 269.6 185 70.3
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.7e-70 269.6 183 66.1
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 3.9e-70 268.5 183 73.8
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 8.6e-70 267.3 152 81.6
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 8.6e-70 267.3 184 67.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.5e-69 266.5 155 81.9
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 7.5e-66 254.2 181 68.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 2.4e-64 249.2 152 77.0
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.4e-64 249.2 181 70.7
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 6.0e-63 244.6 181 68.0
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 1.2e-60 236.9 188 64.9
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 8.1e-60 234.2 138 77.5
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 8.3e-57 224.2 183 61.2
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 2.4e-56 222.6 183 63.9
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 1.2e-55 220.3 138 73.9
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.3e-54 216.1 175 62.9
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 3.9e-54 215.3 155 69.0
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.2e-52 210.3 179 64.2
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.2e-50 203.8 152 63.8
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 3.4e-50 202.2 158 60.1
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 2.5e-45 186.0 186 50.5
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.6e-44 183.3 102 86.3
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.1e-43 180.6 148 59.5
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.5e-42 176.8 158 55.1
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 2.6e-42 176.0 106 76.4
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-42 175.6 100 85.0
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.8e-42 174.9 99 83.8
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 9.9e-42 174.1 100 83.0
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 105 76.2
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 2.4e-40 169.5 132 59.1
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 3.2e-40 169.1 134 64.2
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 5.8e-34 148.3 99 67.7
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 9.9e-34 147.5 81 85.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.2e-32 142.5 105 64.8
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.1e-29 134.0 81 77.8
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.7e-28 129.0 78 78.2
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.8e-27 126.7 101 61.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 4.9e-25 118.6 106 56.6
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-20 103.6 68 67.6
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.8e-20 102.8 106 56.6
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.7e-17 93.6 52 84.6
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 5.5e-16 88.6 187 35.8
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 2.5e-08 63.2 181 29.8
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 5.5e-08 62.0 81 43.2
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 9.4e-08 61.2 37 70.3
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 3.0e-06 56.2 138 28.3
VMungo1309G2077 Vigna mungo HOM05D001645 ORTHO05D001749 6.7e-06 55.1 161 26.1


User provided reference genes

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