Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 2412.1 1199 100.0
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1831.2 1170 75.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1810.4 1198 72.6
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1810.4 1200 73.7
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1801.2 1202 72.3
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1792.3 1201 72.6
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1791.5 1196 72.7
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1790.0 1201 72.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1788.5 1200 72.2
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1780.0 1202 71.7
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1778.8 1202 72.0
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1775.0 1195 72.5
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1766.5 1200 70.9
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1765.4 1200 71.0
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1764.6 1204 71.2
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1760.7 1207 71.2
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1755.7 1240 69.6
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1751.9 1201 71.2
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1751.5 1184 71.6
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1748.4 1198 71.1
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1744.9 1196 70.9
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1744.9 1200 70.1
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1738.8 1199 70.7
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1738.0 1199 70.6
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1733.4 1202 69.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1727.6 1196 70.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1708.0 1201 69.5
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1704.9 1193 69.2
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1696.8 1192 69.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1692.6 1201 68.3
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1688.7 1308 64.8
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1687.5 1198 68.5
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1686.8 1201 68.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1686.4 1201 68.2
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1685.6 1217 67.3
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1685.2 1190 68.9
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1684.8 1199 68.0
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1683.3 1192 67.9
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1680.6 1200 68.4
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1679.1 1201 67.5
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1677.5 1201 67.8
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1672.9 1178 69.5
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1670.6 1201 67.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1668.7 1228 66.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1666.0 1194 68.2
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1662.9 1194 67.8
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1655.6 1194 67.6
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1655.2 1199 68.1
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1646.3 1185 67.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1643.6 1201 67.6
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1643.6 1209 67.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1640.9 1197 67.4
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1199 67.1
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1638.6 1201 66.6
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1634.4 1199 67.4
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1205 66.6
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1202 66.6
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1207 66.0
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1623.2 1205 66.7
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1623.2 1186 66.8
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1622.4 1205 65.6
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1618.6 1204 65.8
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1615.5 1215 65.8
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1614.7 1128 69.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1610.5 1200 65.4
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1609.0 1186 65.5
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1607.8 1229 65.3
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1602.4 1195 65.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1602.0 1199 65.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1598.9 1195 64.6
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1595.9 1190 65.0
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1588.5 1205 64.3
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1586.2 1192 64.9
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1582.8 1192 64.8
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1579.3 1240 62.9
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1578.9 1193 63.6
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1188 65.0
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1183 64.0
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1563.5 1196 63.9
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1165 65.2
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1546.6 1205 64.4
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1544.6 1194 64.1
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1539.2 1253 61.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1536.9 1022 73.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1533.1 1263 60.6
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1531.9 1194 63.9
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1529.2 1155 64.3
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1516.9 1179 62.8
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1490.3 1251 59.7
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1456.8 1289 57.5
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1441.4 1180 60.8
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1435.2 1018 68.7
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1409.4 1192 58.2
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1403.7 970 70.8
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1380.2 1201 56.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1376.7 1196 57.2
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1330.1 988 65.6
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1328.9 1200 58.3
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1316.6 1190 56.7
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1297.0 1206 57.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1252.7 1208 55.5
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1189.9 1190 50.8
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1182.2 1221 50.3
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1172.9 1214 49.4
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1137.5 833 65.9
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1132.9 1171 48.7
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1106.3 866 65.2
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 1.8e-293 1013.1 764 64.7
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 7.6e-292 1007.7 711 68.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 4.3e-271 938.7 718 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 5.3e-261 905.2 1070 44.9
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 7.0e-237 825.1 1101 41.7
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 4.5e-236 822.4 1179 41.0
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.3e-232 810.1 587 66.6
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 5.2e-208 729.2 479 71.6
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 6.8e-208 728.8 561 65.2
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.3e-198 698.0 491 69.9
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 4.9e-198 696.0 753 50.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.0e-155 555.4 387 71.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 9.4e-149 532.3 412 65.5
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 4.5e-143 513.5 592 51.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.6e-124 451.8 716 38.1
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 3.4e-106 391.0 259 73.0
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 5.6e-85 320.5 375 48.0
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.3e-78 299.3 274 56.6
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 4.5e-66 257.7 179 70.9
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 1.7e-65 255.8 202 64.4
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.8e-65 254.6 140 91.4
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.7e-57 229.2 304 41.8
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 5.3e-51 207.6 296 40.2
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 3.2e-48 198.4 238 46.6
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.5e-34 152.9 135 60.0
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.5e-29 136.3 150 50.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 6.7e-22 110.9 72 69.4
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.9e-16 92.8 202 33.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.0e-13 82.8 82 53.7
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 3.4e-13 82.0 70 60.0
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 3.7e-12 78.6 322 23.6
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 9.1e-11 73.9 68 55.9
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 5.0e-09 68.2 82 48.8
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 6.5e-09 67.8 64 54.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.6e-07 63.2 94 38.3
CDE12G0049 Ceratophyllum demersum HOM05D005254 ORTHO05D130362 3.0e-06 58.9 46 54.3
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 4.0e-06 58.5 45 60.0


User provided reference genes

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