Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 1.1e-271 939.5 504 100.0
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 1.1e-194 683.7 508 71.9
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 9.0e-186 654.1 492 70.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 1.2e-185 653.7 507 69.2
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.2e-185 653.7 511 69.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 7.6e-185 651.0 515 68.5
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.3e-184 650.2 473 71.9
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 3.2e-183 645.6 473 72.5
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 7.4e-180 634.4 425 76.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 4.8e-179 631.7 506 67.0
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.1e-178 630.6 521 65.6
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.1e-178 630.6 509 69.0
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.4e-178 629.4 425 75.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 5.3e-178 628.2 454 71.8
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 6.9e-178 627.9 509 65.8
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 4.5e-177 625.2 510 67.8
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 7.6e-177 624.4 502 66.5
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 2.5e-175 619.4 465 70.1
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 2.5e-175 619.4 509 65.4
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 4.2e-175 618.6 517 66.7
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 2.3e-173 612.8 511 66.3
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.1e-172 610.5 467 68.3
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 1.5e-172 610.1 516 66.3
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 2.1e-171 606.3 455 69.9
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.8e-170 603.2 461 70.5
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 4.1e-170 602.1 455 70.8
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 5.3e-170 601.7 537 62.0
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 9.0e-170 600.9 508 64.4
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 1.5e-169 600.1 501 65.7
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.3e-168 597.0 508 64.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 1.7e-168 596.7 511 64.4
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.2e-168 596.3 506 64.0
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 2.9e-168 595.9 488 65.0
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 1.1e-167 594.0 506 63.6
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 3.2e-167 592.4 487 64.3
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.2e-167 591.3 502 65.5
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 9.3e-167 590.9 502 65.7
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.6e-166 590.1 555 58.4
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 2.7e-166 589.3 506 63.0
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 2.7e-166 589.3 501 67.9
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 3.6e-166 589.0 502 65.7
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 4.6e-166 588.6 473 66.6
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 4.6e-166 588.6 465 67.1
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 6.1e-166 588.2 481 70.3
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-165 587.4 501 65.7
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 1.0e-165 587.4 430 71.4
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 1.0e-165 587.4 467 67.9
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 3.0e-165 585.9 500 62.4
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 3.9e-165 585.5 462 66.5
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 8.7e-165 584.3 461 65.7
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.9e-164 583.2 502 62.0
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 1.9e-164 583.2 408 75.0
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 1.9e-164 583.2 468 69.2
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 2.5e-164 582.8 480 64.2
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 4.3e-164 582.0 460 65.0
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.3e-164 582.0 499 63.1
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 5.7e-164 581.6 466 67.0
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 9.7e-164 580.9 487 63.4
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.6e-163 580.1 461 65.7
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 2.2e-163 579.7 435 69.2
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.2e-163 579.7 442 67.9
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.2e-161 573.9 511 60.3
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.5e-161 572.0 449 66.6
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 1.0e-160 570.9 506 63.2
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 6.5e-160 568.2 460 64.1
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 6.5e-160 568.2 460 64.1
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.1e-159 567.4 460 64.3
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.9e-159 566.6 506 61.1
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 2.5e-159 566.2 496 62.1
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.2e-158 563.9 456 64.9
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 4.6e-158 562.0 452 64.6
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.4e-157 560.5 398 73.1
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 1.1e-156 557.4 418 68.9
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 7.4e-156 554.7 505 60.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 1.7e-155 553.5 444 67.8
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.8e-154 550.1 423 66.0
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 4.1e-154 548.9 483 61.5
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 6.9e-154 548.1 479 61.6
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 9.1e-154 547.7 376 75.3
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 7.2e-151 538.1 417 66.9
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 9.4e-151 537.7 507 62.1
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 2.7e-150 536.2 478 59.2
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.4e-146 523.1 415 66.7
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 9.1e-146 521.2 426 65.0
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.0e-145 520.0 460 61.3
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 4.5e-145 518.8 500 58.4
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 6.7e-141 505.0 343 72.9
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 1.7e-139 500.4 473 57.5
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.1e-138 497.7 506 56.9
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 9.1e-138 494.6 503 56.3
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 2.3e-133 479.9 401 65.6
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 3.0e-133 479.6 431 59.9
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 2.4e-130 469.9 390 61.3
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 4.5e-129 465.7 532 50.2
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 6.5e-128 461.8 415 58.6
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 2.1e-126 456.8 417 59.7
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 1.0e-125 454.5 432 57.2
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 3.0e-125 453.0 442 56.3
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 2.2e-123 446.8 353 66.3
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 1.0e-117 427.9 387 58.7
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.1e-111 407.9 322 63.7
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 6.2e-110 402.1 306 65.4
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.6e-108 396.7 378 56.9
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 4.0e-101 372.9 478 46.0
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 8.9e-101 371.7 429 50.8
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 6.4e-99 365.5 424 49.1
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.4e-98 363.6 264 70.1
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.4e-98 363.6 383 50.7
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 7.3e-95 352.1 422 48.3
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.8e-92 342.4 255 69.4
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 4.1e-90 336.3 276 65.9
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 2.4e-85 320.5 363 47.9
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 9.3e-82 308.5 336 50.9
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 6.2e-70 269.2 375 43.5
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.8e-69 267.7 254 57.5
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.3e-67 261.5 216 61.6
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 2.8e-62 243.8 448 35.7
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 2.7e-57 227.3 298 48.7
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 3.4e-52 210.3 520 31.5
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 9.4e-34 149.1 94 77.7
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 2.0e-28 131.3 81 80.2
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.6e-28 131.0 112 64.3
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 8.8e-24 115.9 191 40.8
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.6e-23 114.4 223 33.6
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 4.8e-22 110.2 61 75.4
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.7e-17 94.4 215 32.6
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.7e-17 93.6 144 47.9
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 6.8e-16 89.7 67 62.7
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 8.8e-16 89.4 160 43.8
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.7e-14 85.1 89 46.1
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 1.4e-13 82.0 95 42.1
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.6e-07 61.2 114 35.1
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 3.4e-07 60.8 62 46.8


User provided reference genes

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