Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.9e-120 435.3 224 100.0
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 4.4e-60 235.3 153 83.7
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 1.9e-42 176.8 139 70.5
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 7.9e-41 171.4 149 64.4
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.5e-39 166.4 144 64.6
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 5.6e-39 165.2 140 68.6
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.6e-38 163.7 153 62.7
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.1e-38 163.3 125 72.8
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 6.2e-38 161.8 153 61.4
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 8.1e-38 161.4 153 60.8
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 1.1e-37 161.0 153 61.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 1.4e-37 160.6 153 60.8
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 1.4e-37 160.6 150 64.7
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 2.4e-37 159.8 153 62.1
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 3.1e-37 159.5 129 72.1
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 3.1e-37 159.5 153 57.5
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 4.0e-37 159.1 110 78.2
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 4.0e-37 159.1 153 57.5
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 4.0e-37 159.1 154 60.4
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 5.3e-37 158.7 154 57.1
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 9.0e-37 157.9 142 64.8
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 2.0e-36 156.8 153 59.5
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.0e-36 156.8 116 72.4
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.0e-36 156.8 122 69.7
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 2.6e-36 156.4 143 62.9
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 3.4e-36 156.0 153 60.1
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 3.4e-36 156.0 136 64.7
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.5e-36 155.6 115 71.3
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.5e-36 155.6 115 71.3
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 4.5e-36 155.6 125 67.2
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 5.8e-36 155.2 148 62.2
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 5.8e-36 155.2 128 67.2
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 7.6e-36 154.8 153 59.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 7.6e-36 154.8 119 71.4
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 7.6e-36 154.8 153 56.9
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 9.9e-36 154.5 153 56.2
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 9.9e-36 154.5 153 57.5
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.3e-35 154.1 112 71.4
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 1.3e-35 154.1 112 71.4
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 1.3e-35 154.1 106 75.5
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.3e-35 154.1 124 65.3
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 1.3e-35 154.1 153 60.8
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 1.7e-35 153.7 153 58.8
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 1.7e-35 153.7 144 61.8
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 2.2e-35 153.3 147 61.9
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.2e-35 153.3 98 78.6
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 2.2e-35 153.3 144 62.5
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 2.2e-35 153.3 153 57.5
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 2.9e-35 152.9 111 72.1
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 2.9e-35 152.9 158 56.3
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 3.8e-35 152.5 111 70.3
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 4.9e-35 152.1 104 76.0
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 4.9e-35 152.1 108 73.1
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 6.4e-35 151.8 120 70.0
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 6.4e-35 151.8 143 61.5
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 6.4e-35 151.8 143 61.5
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 6.4e-35 151.8 154 57.1
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 6.4e-35 151.8 146 61.6
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.4e-35 151.4 144 61.8
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 8.4e-35 151.4 110 70.9
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.1e-34 151.0 88 83.0
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 1.4e-34 150.6 146 58.2
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 1.4e-34 150.6 140 61.4
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-34 150.6 127 66.1
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 1.4e-34 150.6 148 58.8
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 1.9e-34 150.2 143 61.5
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 1.9e-34 150.2 143 61.5
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 1.9e-34 150.2 143 61.5
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 1.9e-34 150.2 143 63.6
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 1.9e-34 150.2 123 66.7
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 1.9e-34 150.2 153 58.8
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 1.9e-34 150.2 118 67.8
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 1.9e-34 150.2 118 67.8
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 1.9e-34 150.2 93 78.5
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 1.9e-34 150.2 107 74.8
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 2.4e-34 149.8 121 66.9
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.4e-34 149.8 88 83.0
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 2.4e-34 149.8 88 83.0
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 3.2e-34 149.4 88 81.8
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.2e-34 149.4 108 73.1
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 3.2e-34 149.4 108 73.1
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 4.2e-34 149.1 88 81.8
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 4.2e-34 149.1 113 71.7
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 5.5e-34 148.7 100 73.0
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 5.5e-34 148.7 114 68.4
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 7.1e-34 148.3 115 67.0
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.1e-34 148.3 88 80.7
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 7.1e-34 148.3 88 80.7
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 7.1e-34 148.3 123 65.9
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 7.1e-34 148.3 136 58.8
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 7.1e-34 148.3 87 82.8
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 9.3e-34 147.9 112 72.3
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 9.3e-34 147.9 112 72.3
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 9.3e-34 147.9 134 64.2
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 9.3e-34 147.9 127 59.8
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 1.6e-33 147.1 153 56.9
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.6e-33 147.1 95 76.8
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.6e-33 147.1 99 75.8
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 2.1e-33 146.7 143 61.5
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.1e-33 146.7 136 58.8
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.1e-33 146.7 136 58.8
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 2.7e-33 146.4 89 80.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.5e-33 146.0 108 70.4
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.6e-33 145.6 121 67.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 4.6e-33 145.6 121 63.6
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 4.6e-33 145.6 142 60.6
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 4.6e-33 145.6 119 67.2
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 4.6e-33 145.6 140 60.0
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 6.0e-33 145.2 106 70.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 7.9e-33 144.8 129 62.8
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 7.9e-33 144.8 123 61.0
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 1.0e-32 144.4 134 61.2
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 1.0e-32 144.4 111 70.3
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 1.3e-32 144.1 105 69.5
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 1.8e-32 143.7 153 55.6
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.3e-32 143.3 118 64.4
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 2.3e-32 143.3 118 64.4
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.3e-32 143.3 128 63.3
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 2.3e-32 143.3 96 74.0
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 3.0e-32 142.9 111 66.7
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 3.0e-32 142.9 122 64.8
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 3.9e-32 142.5 125 62.4
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 5.1e-32 142.1 110 67.3
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 6.7e-32 141.7 123 61.8
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 1.5e-31 140.6 89 77.5
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 1.9e-31 140.2 159 54.1
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.5e-31 139.8 86 81.4
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 4.3e-31 139.0 126 61.1
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 5.8e-28 128.6 144 50.7
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 1.6e-25 120.6 129 53.5
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 1.9e-23 113.6 86 60.5
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 7.4e-23 111.7 106 53.8
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.1e-21 105.9 76 68.4
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 4.5e-20 102.4 111 56.8
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 1.1e-18 97.8 57 86.0
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.2e-18 96.3 57 80.7
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 3.0e-16 89.7 57 75.4
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 4.1e-13 79.3 115 39.1
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.2e-12 77.8 45 80.0
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 7.7e-12 75.1 95 43.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 3.2e-10 69.7 39 79.5
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.4e-08 64.3 38 86.8
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 1.4e-08 64.3 104 40.4
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.7e-06 56.2 36 75.0


User provided reference genes

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