Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI32G0188 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 1.3e-87 326.2 155 100.0
TWI63G0393 Tripterygium wilfordii HOM05D005151 ORTHO05D006322 1.9e-49 199.5 114 82.5
QL02p061718 Quercus lobata HOM05D005151 ORTHO05D006322 3.4e-43 178.7 114 72.8
Potri.006G145800 Populus trichocarpa HOM05D005151 ORTHO05D006322 7.6e-43 177.6 114 72.8
ATR0693G369 Amborella trichopoda HOM05D005151 ORTHO05D006322 2.2e-42 176.0 114 68.4
HPP92_018271 Vanilla planifolia HOM05D000049 ORTHO05D000027 2.9e-42 175.6 115 69.6
Nn6g35560 Nelumbo nucifera HOM05D005151 ORTHO05D006322 1.9e-41 172.9 114 67.5
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 2.4e-41 172.6 114 68.4
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 7.1e-41 171.0 114 68.4
CSS0008874 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 1.6e-40 169.9 114 68.4
SEGI_15722 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 2.1e-40 169.5 114 68.4
Actinidia29915 Actinidia chinensis HOM05D005151 ORTHO05D006322 4.6e-40 168.3 103 74.8
Nn8g38754 Nelumbo nucifera HOM05D005151 ORTHO05D006322 2.3e-39 166.0 100 75.0
CANSAT56G1855 Cannabis sativa HOM05D005151 ORTHO05D006322 3.9e-39 165.2 109 71.6
Rhsim03G0230900 Rhododendron simsii HOM05D005151 ORTHO05D006322 1.6e-37 159.8 114 64.9
Rhsim03G0233600 Rhododendron simsii HOM05D005151 ORTHO05D006322 3.6e-37 158.7 143 53.1
Dinv36800 Davidia involucrata HOM05D005151 ORTHO05D006322 1.1e-36 157.1 114 67.5
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.1e-36 155.6 102 71.6
Oeu054828.1 Olea europaea HOM05D005151 ORTHO05D006322 5.8e-35 151.4 102 69.6
SEGI_09202 Sequoiadendron giganteum HOM05D005151 ORTHO05D006322 1.9e-33 146.4 114 60.5
TAR624G0089 Trochodendron aralioides HOM05D005151 ORTHO05D006322 5.4e-33 144.8 114 58.8
SGA_v2.0_scaffold23G10051 Striga asiatica HOM05D005151 ORTHO05D006322 3.0e-31 139.0 107 60.7
PSO210G7456 Papaver somniferum HOM05D005151 ORTHO05D006322 3.3e-30 135.6 114 56.1
Sed0024958 Sechium edule HOM05D005151 ORTHO05D006322 4.8e-29 131.7 114 57.0
Lsat_1_v5_gn_7_34720 Lactuca sativa HOM05D005151 ORTHO05D006322 3.1e-28 129.0 109 58.7
MSTRG.10530 Avicennia marina HOM05D005151 ORTHO05D006322 1.3e-26 123.6 102 59.8
Eucgr.C03405 Eucalyptus grandis HOM05D005151 ORTHO05D006322 8.4e-26 120.9 115 53.9
CSS0027881 Camellia sinensis var. sinensis HOM05D005151 ORTHO05D006322 1.4e-25 120.2 114 52.6
Manes.16G098700 Manihot esculenta HOM05D005151 ORTHO05D006322 1.2e-24 117.1 114 51.8
DCAR_024719 Daucus carota HOM05D005151 ORTHO05D006322 2.7e-24 115.9 73 75.3
Psat4g016320 Pisum sativum HOM05D005151 ORTHO05D006322 2.7e-24 115.9 106 53.8
Cpa.g.sc28.112 Carica papaya HOM05D005151 ORTHO05D006322 3.5e-24 115.5 114 51.8
MELO3C015499.2 Cucumis melo HOM05D005151 ORTHO05D006322 4.6e-24 115.2 114 50.9
CsaV3_1G040710 Cucumis sativus L. HOM05D005151 ORTHO05D006322 4.6e-24 115.2 114 50.9
Sabra06G0115300 Salix brachista HOM05D005151 ORTHO05D006322 4.6e-24 115.2 114 50.9
MBI16_g18211_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 7.9e-24 114.4 119 50.4
TPR.G9439 Trifolium pratense HOM05D005151 ORTHO05D006322 1.8e-23 113.2 114 50.9
Medtr4g125710 Medicago truncatula HOM05D005151 ORTHO05D006322 2.3e-23 112.8 114 50.0
Cfa003042 Carpinus fangiana HOM05D005151 ORTHO05D006322 1.5e-22 110.2 114 50.0
MBI15_g27849_MAGBIO Magnolia biondii HOM05D005151 ORTHO05D006322 3.3e-22 109.0 114 49.1
Glyma.13G107300 Glycine max HOM05D005151 ORTHO05D006322 4.3e-22 108.6 114 50.0
THA.LOC104820014 Tarenaya hassleriana HOM05D005151 ORTHO05D006322 5.7e-22 108.2 114 48.2
Ca_21304_v3 Cicer arietinum L. HOM05D005151 ORTHO05D006322 7.4e-22 107.8 114 48.2
Sopen12g003960 Solanum pennellii HOM05D005151 ORTHO05D006322 7.4e-22 107.8 70 74.3
SHI30700 Sapria himalayana HOM05D005151 ORTHO05D006322 1.3e-21 107.1 108 51.9
PGSC0003DMG400016078 Solanum tuberosum HOM05D005151 ORTHO05D006322 1.6e-21 106.7 70 71.4
EL10Ac2g02619 Beta vulgaris HOM05D005151 ORTHO05D006322 2.1e-21 106.3 109 48.6
Solyc07g041080.3 Solanum lycopersicum HOM05D005151 ORTHO05D006322 2.1e-21 106.3 70 70.0
Sopen07g020370 Solanum pennellii HOM05D005151 ORTHO05D006322 2.1e-21 106.3 70 70.0
PGSC0003DMG400000330 Solanum tuberosum HOM05D005151 ORTHO05D006322 2.8e-21 105.9 69 73.9
Nitab4.5_0002642g0040 Nicotiana tabacum HOM05D005151 ORTHO05D006322 4.8e-21 105.1 70 72.9
Sc09g0008330 Simmondsia chinensis HOM05D005151 ORTHO05D006322 4.8e-21 105.1 114 44.7
Nitab4.5_0002842g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 6.2e-21 104.8 68 75.0
Peaxi162Scf00498g00525 Petunia axillaris HOM05D005151 ORTHO05D006322 6.2e-21 104.8 70 70.0
MD15G1212600 Malus domestica HOM05D005151 ORTHO05D006322 8.2e-21 104.4 114 48.2
Atru.chr12.2297 Acer truncatum HOM05D005151 ORTHO05D006322 2.4e-20 102.8 114 48.2
GSVIVG01015149001 Vitis vinifera HOM05D005151 ORTHO05D006322 2.4e-20 102.8 114 48.2
MD02G1085500 Malus domestica HOM05D005151 ORTHO05D006322 3.1e-20 102.4 114 47.4
Prupe.6G180900 Prunus persica HOM05D005151 ORTHO05D006322 3.1e-20 102.4 114 48.2
ClCG03G015320 Citrullus lanatus HOM05D005151 ORTHO05D006322 4.0e-20 102.1 114 46.5
Nitab4.5_0002079g0070 Nicotiana tabacum HOM05D005151 ORTHO05D006322 6.9e-20 101.3 67 73.1
PSO210G4100 Papaver somniferum HOM05D005151 ORTHO05D006322 1.5e-19 100.1 114 43.9
Nitab4.5_0000073g0020 Nicotiana tabacum HOM05D005151 ORTHO05D006322 2.0e-19 99.8 67 71.6
Sed0005858 Sechium edule HOM05D005151 ORTHO05D006322 2.6e-19 99.4 114 45.6
Hma1.2p1_0672F.1_g200870 Hydrangea macrophylla HOM05D005151 ORTHO05D006322 4.5e-19 98.6 104 52.9
SalBow1G7018 Salvia bowleyana HOM05D005151 ORTHO05D006322 4.5e-19 98.6 71 67.6
Oeu051308.2 Olea europaea HOM05D005151 ORTHO05D006322 1.0e-18 97.4 102 51.0
CiPaw.03G210900 Carya illinoinensis HOM05D005151 ORTHO05D006322 2.2e-18 96.3 114 44.7
FAN19G1484 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.2e-18 96.3 114 44.7
FAN23G2025 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.2e-18 96.3 114 44.7
FAN28G0640 Fragaria x ananassa HOM05D005151 ORTHO05D006322 2.2e-18 96.3 114 44.7
RcHm_v2.0_Chr3g0490661 Rosa chinensis HOM05D005151 ORTHO05D006322 2.2e-18 96.3 114 44.7
CDE05G0358 Ceratophyllum demersum HOM05D005151 ORTHO05D006322 3.8e-18 95.5 114 43.9
FvH4_1g30420 Fragaria vesca HOM05D005151 ORTHO05D006322 5.0e-18 95.1 114 43.9
Aqoxy7G03996 Aquilegia oxysepala HOM05D005151 ORTHO05D006322 6.5e-18 94.7 114 43.9
BcaC01g01191 Brassica carinata HOM05D005151 ORTHO05D006322 2.5e-17 92.8 114 44.7
COL.COLO4_27437 Corchorus olitorius HOM05D005151 ORTHO05D006322 3.2e-17 92.4 55 74.5
AagrBONN_evm.TU.Sc2ySwM_344.2105 Anthoceros agrestis HOM05D005151 ORTHO05D006322 4.2e-17 92.0 109 44.0
AagrBONN_evm.TU.Sc2ySwM_344.5188 Anthoceros agrestis HOM05D005151 ORTHO05D006322 4.2e-17 92.0 109 44.0
HanXRQChr03g0063021 Helianthus annuus HOM05D005151 ORTHO05D006322 7.1e-17 91.3 109 45.0
Mapoly0001s0052 Marchantia polymorpha HOM05D005151 ORTHO05D006322 7.1e-17 91.3 109 44.0
FAN26G3474 Fragaria x ananassa HOM05D005151 ORTHO05D006322 9.3e-17 90.9 114 43.0
BcaC09g51761 Brassica carinata HOM05D005151 ORTHO05D006322 1.2e-16 90.5 114 43.0
C01p09370 Brassica napus HOM05D005151 ORTHO05D006322 1.2e-16 90.5 114 43.0
BolC1t00925H Brassica oleracea HOM05D005151 ORTHO05D006322 1.2e-16 90.5 114 43.0
Ciclev10010808m.g Citrus clementina HOM05D005151 ORTHO05D006322 1.6e-16 90.1 58 69.0
Lalb_Chr07g0181001 Lupinus albus HOM05D005151 ORTHO05D006322 1.6e-16 90.1 114 44.7
AL7G22420 Arabidopsis lyrata HOM05D005151 ORTHO05D006322 2.1e-16 89.7 114 42.1
CARHR237730 Cardamine hirsuta HOM05D005151 ORTHO05D006322 2.1e-16 89.7 114 42.1
AUR62038818 Chenopodium quinoa HOM05D005151 ORTHO05D006322 6.1e-16 88.2 106 42.5
CBR_g54314 Chara braunii HOM05D005151 ORTHO05D006322 7.9e-16 87.8 111 43.2
AUR62041890 Chenopodium quinoa HOM05D005151 ORTHO05D006322 7.9e-16 87.8 114 41.2
Glyma.17G052100 Glycine max HOM05D005151 ORTHO05D006322 7.9e-16 87.8 114 43.0
Lj4g0018142 Lotus japonicus HOM05D005151 ORTHO05D006322 1.0e-15 87.4 114 43.0
SMO244G0035 Selaginella moellendorffii HOM05D005151 ORTHO05D006322 8.7e-15 84.3 109 41.3
VMungo1215G2073 Vigna mungo HOM05D005151 ORTHO05D006322 1.1e-14 84.0 114 40.4
Phvul.003G133800 Phaseolus vulgaris HOM05D005151 ORTHO05D006322 1.5e-14 83.6 114 40.4
PGR142G4460 Punica granatum HOM05D005151 ORTHO05D006322 7.4e-14 81.3 109 41.3
Duzib168G1011 Durio zibethinus HOM05D005151 ORTHO05D006322 9.7e-14 80.9 102 45.1
vmacro06306 Vaccinium macrocarpon HOM05D005151 ORTHO05D006322 4.8e-13 78.6 74 55.4
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 6.3e-13 78.2 114 38.6
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 6.3e-13 78.2 114 38.6
arahy.Tifrunner.gnm1.ann1.20C8M4 Arachis hypogaea HOM05D005151 ORTHO05D006322 8.2e-13 77.8 56 64.3
arahy.Tifrunner.gnm1.ann1.7L7952 Arachis hypogaea HOM05D005151 ORTHO05D006322 8.2e-13 77.8 56 64.3
Ah.12g064130 Amaranthus hybridus HOM05D005151 ORTHO05D006322 2.9e-10 69.3 75 48.0
unitig_699.g19288 Utricularia gibba HOM05D005151 ORTHO05D006322 2.5e-09 66.2 50 62.0
ECA240G1097 Erigeron canadensis HOM05D005151 ORTHO05D006322 3.2e-09 65.9 44 68.2
Lj4A288G22 Lonicera japonica HOM05D005151 ORTHO05D006322 1.0e-07 60.8 114 33.3
QL02p086475 Quercus lobata HOM05D000836 ORTHO05D000709 3.0e-07 59.3 99 32.3
Duzib150G1015 Durio zibethinus HOM05D005151 ORTHO05D006322 8.8e-07 57.8 100 34.0
Phvul.003G159500 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 8.8e-07 57.8 91 31.9
RcHm_v2.0_Chr2g0089711 Rosa chinensis HOM05D000836 ORTHO05D000709 1.1e-06 57.4 91 31.9
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 1.5e-06 57.0 59 49.2
Glyma.17G120000 Glycine max HOM05D000836 ORTHO05D000709 1.5e-06 57.0 91 31.9
COL.COLO4_18151 Corchorus olitorius HOM05D005151 ORTHO05D006322 2.0e-06 56.6 100 33.0
Glyma.05G011800 Glycine max HOM05D000836 ORTHO05D000709 2.0e-06 56.6 91 31.9
THA.LOC104809014 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 2.0e-06 56.6 91 30.8
CiPaw.04G167600 Carya illinoinensis HOM05D000836 ORTHO05D000709 2.5e-06 56.2 91 31.9
Thecc.09G082600 Theobroma cacao HOM05D005151 ORTHO05D006322 2.5e-06 56.2 100 33.0
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 3.3e-06 55.8 90 36.7
MD02G1040200 Malus domestica HOM05D000836 ORTHO05D000709 3.3e-06 55.8 91 31.9
Ca_21722_v3 Cicer arietinum L. HOM05D000836 ORTHO05D000709 4.3e-06 55.5 94 33.0
A10p22470 Brassica napus HOM05D004758 ORTHO05D006063 5.7e-06 55.1 85 35.3
BraA10t44306Z Brassica rapa HOM05D004758 ORTHO05D006063 5.7e-06 55.1 85 35.3
Cpa.g.c29144.2 Carica papaya HOM05D000836 ORTHO05D000709 5.7e-06 55.1 112 29.5
Gohir.D06G073100 Gossypium hirsutum HOM05D005151 ORTHO05D006322 5.7e-06 55.1 102 31.4
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 5.7e-06 55.1 75 38.7
Manes.03G067700 Manihot esculenta HOM05D000836 ORTHO05D000709 5.7e-06 55.1 122 29.5
Manes.16G063800 Manihot esculenta HOM05D000836 ORTHO05D000709 5.7e-06 55.1 109 29.4
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 5.7e-06 55.1 85 38.8
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 5.7e-06 55.1 73 39.7
Aa31LG11G12880 Aethionema arabicum HOM05D004758 ORTHO05D006063 7.4e-06 54.7 85 36.5
BcaB03g12621 Brassica carinata HOM05D005151 ORTHO05D006322 7.4e-06 54.7 114 33.3
CANSAT56G1037 Cannabis sativa HOM05D000836 ORTHO05D000709 7.4e-06 54.7 91 29.7
ECA240G1376 Erigeron canadensis HOM05D005151 ORTHO05D006322 7.4e-06 54.7 80 40.0
Gorai.010G085400 Gossypium raimondii HOM05D005151 ORTHO05D006322 7.4e-06 54.7 102 31.4
Os07g0572000 Oryza sativa ssp. japonica HOM05D002943 ORTHO05D002685 7.4e-06 54.7 79 36.7
THA.LOC104815255 Tarenaya hassleriana HOM05D000836 ORTHO05D000709 7.4e-06 54.7 91 29.7
Thecc.09G117400 Theobroma cacao HOM05D000836 ORTHO05D000709 7.4e-06 54.7 91 30.8
FAN23G0885 Fragaria x ananassa HOM05D000836 ORTHO05D000709 9.7e-06 54.3 91 30.8
FAN28G0524 Fragaria x ananassa HOM05D000836 ORTHO05D000709 9.7e-06 54.3 91 30.8
Gohir.A06G074300 Gossypium hirsutum HOM05D005151 ORTHO05D006322 9.7e-06 54.3 102 30.4


User provided reference genes

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