Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0852 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 0.0e+00 1561.2 945 100.0
TWI12G1038 Tripterygium wilfordii HOM05D003521 ORTHO05D000476 0.0e+00 1375.9 948 87.1
Duzib235G1126 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1123.6 967 72.6
Duzib160G0549 Durio zibethinus HOM05D003521 ORTHO05D000476 0.0e+00 1110.9 967 71.6
Ciclev10024803m.g Citrus clementina HOM05D003521 ORTHO05D000476 0.0e+00 1092.0 967 70.2
Thecc.06G092900 Theobroma cacao HOM05D003521 ORTHO05D000476 0.0e+00 1090.1 969 71.1
Potri.003G052100 Populus trichocarpa HOM05D003521 ORTHO05D000476 6.5e-312 1074.3 976 68.0
Dinv30477 Davidia involucrata HOM05D003521 ORTHO05D000476 3.2e-311 1071.6 980 70.4
Atru.chr1.3345 Acer truncatum HOM05D003521 ORTHO05D000476 6.0e-308 1060.8 973 70.6
CiPaw.01G235400 Carya illinoinensis HOM05D003521 ORTHO05D000476 7.8e-308 1060.4 993 69.1
MD09G1208900 Malus domestica HOM05D003521 ORTHO05D000476 3.3e-306 1055.0 987 69.9
QL05p021582 Quercus lobata HOM05D003521 ORTHO05D000476 4.3e-306 1054.7 995 69.5
Hma1.2p1_1195F.1_g265855 Hydrangea macrophylla HOM05D003521 ORTHO05D000476 2.0e-303 1045.8 973 68.2
Gohir.D05G131500 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.6e-303 1045.4 969 69.8
Gorai.009G135200 Gossypium raimondii HOM05D003521 ORTHO05D000476 2.6e-303 1045.4 967 69.7
CSS0015824 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.4e-302 1040.4 984 69.2
CSS0047293 Camellia sinensis var. sinensis HOM05D003521 ORTHO05D000476 8.4e-302 1040.4 979 66.9
Potri.001G185050 Populus trichocarpa HOM05D003521 ORTHO05D000476 9.2e-301 1036.9 984 67.7
GSVIVG01038690001 Vitis vinifera HOM05D003521 ORTHO05D000476 4.6e-300 1034.6 947 67.8
MD17G1190500 Malus domestica HOM05D003521 ORTHO05D000476 1.5e-298 1029.6 991 69.2
Manes.11G037600 Manihot esculenta HOM05D003521 ORTHO05D000476 1.2e-297 1026.5 957 69.9
RcHm_v2.0_Chr2g0139071 Rosa chinensis HOM05D003521 ORTHO05D000476 1.8e-296 1022.7 1043 62.8
Sabra03G0027000 Salix brachista HOM05D003521 ORTHO05D000476 6.9e-296 1020.8 1025 65.3
Actinidia21685 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.2e-295 1020.0 995 67.9
Rhsim08G0223900 Rhododendron simsii HOM05D003521 ORTHO05D000476 1.5e-295 1019.6 990 67.8
FvH4_6g31822 Fragaria vesca HOM05D003521 ORTHO05D000476 5.8e-295 1017.7 1046 63.6
CiPaw.02G148500 Carya illinoinensis HOM05D003521 ORTHO05D000476 1.3e-294 1016.5 1021 64.3
Gohir.A05G132400 Gossypium hirsutum HOM05D003521 ORTHO05D000476 3.8e-294 1015.0 968 68.4
COL.COLO4_30440 Corchorus olitorius HOM05D003521 ORTHO05D000476 1.1e-293 1013.4 947 69.9
FAN02G3342 Fragaria x ananassa HOM05D003521 ORTHO05D000476 6.0e-292 1007.7 1037 62.7
Prupe.3G066400 Prunus persica HOM05D003521 ORTHO05D000476 9.6e-290 1000.3 990 65.1
FAN14G2596 Fragaria x ananassa HOM05D003521 ORTHO05D000476 1.6e-289 999.6 1029 62.6
FAN05G3380 Fragaria x ananassa HOM05D003521 ORTHO05D000476 8.1e-289 997.3 1038 62.3
Gohir.A10G081600 Gossypium hirsutum HOM05D003521 ORTHO05D000476 6.9e-288 994.2 967 67.6
Haze_16353 Corylus avellana HOM05D003521 ORTHO05D000476 2.6e-287 992.3 1150 59.7
Gohir.D10G069800 Gossypium hirsutum HOM05D003521 ORTHO05D000476 2.2e-286 989.2 956 67.6
TAR626G0208 Trochodendron aralioides HOM05D003521 ORTHO05D000476 2.7e-284 982.2 970 65.4
Gorai.011G074100 Gossypium raimondii HOM05D003521 ORTHO05D000476 7.9e-284 980.7 965 66.6
THA.LOC104812525 Tarenaya hassleriana HOM05D003521 ORTHO05D000476 2.3e-283 979.2 979 63.2
CANSAT56G3073 Cannabis sativa HOM05D003521 ORTHO05D000476 3.0e-283 978.8 996 64.8
Eucgr.F03041 Eucalyptus grandis HOM05D003521 ORTHO05D000476 3.0e-283 978.8 982 62.9
Glyma.15G016700 Glycine max HOM05D003521 ORTHO05D000476 3.0e-283 978.8 995 65.7
Lj3g0009081 Lotus japonicus HOM05D003521 ORTHO05D000476 1.1e-282 976.9 1004 64.1
vmacro18884 Vaccinium macrocarpon HOM05D003521 ORTHO05D000476 4.3e-282 974.9 1020 65.1
Medtr2g101700 Medicago truncatula HOM05D003521 ORTHO05D000476 9.6e-282 973.8 1003 65.0
Lalb_Chr14g0373191 Lupinus albus HOM05D003521 ORTHO05D000476 2.1e-281 972.6 987 62.8
Lalb_Chr24g0395951 Lupinus albus HOM05D003521 ORTHO05D000476 2.4e-280 969.1 989 61.7
Carub.0002s2767 Capsella rubella HOM05D003521 ORTHO05D000476 5.3e-280 968.0 962 64.7
TAR383G0706 Trochodendron aralioides HOM05D003521 ORTHO05D000476 5.3e-280 968.0 962 63.9
AL2G41720 Arabidopsis lyrata HOM05D003521 ORTHO05D000476 3.4e-279 965.3 973 63.6
Thhalv10018077m.g Eutrema salsugineum HOM05D003521 ORTHO05D000476 9.9e-279 963.8 973 62.2
AT1G79830 Arabidopsis thaliana HOM05D003521 ORTHO05D000476 3.8e-278 961.8 969 63.3
Ca_01135_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 6.4e-278 961.1 1017 62.4
Sc18g0003130 Simmondsia chinensis HOM05D003521 ORTHO05D000476 5.5e-277 958.0 982 65.1
Phvul.005G169100 Phaseolus vulgaris HOM05D003521 ORTHO05D000476 7.1e-277 957.6 994 64.3
Psat5g297520 Pisum sativum HOM05D003521 ORTHO05D000476 4.6e-276 954.9 1027 62.6
Nitab4.5_0010600g0010 Nicotiana tabacum HOM05D003521 ORTHO05D000476 2.3e-275 952.6 1035 59.3
Sp5g35930 Schrenkiella parvula HOM05D003521 ORTHO05D000476 3.9e-275 951.8 972 63.1
VMungo1080G0951 Vigna mungo HOM05D003521 ORTHO05D000476 8.7e-275 950.7 1002 60.7
C06p28740 Brassica napus HOM05D003521 ORTHO05D000476 1.1e-272 943.7 954 63.0
Peaxi162Scf00207g01030 Petunia axillaris HOM05D003521 ORTHO05D000476 1.4e-272 943.3 1024 61.4
Nn3g18099 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.8e-272 943.0 965 63.1
BolC6t38043H Brassica oleracea HOM05D003521 ORTHO05D000476 3.4e-271 938.7 959 62.8
BraA07t30279Z Brassica rapa HOM05D003521 ORTHO05D000476 3.4e-271 938.7 962 64.6
Dinv38015 Davidia involucrata HOM05D003521 ORTHO05D000476 7.6e-271 937.6 736 76.8
Nitab4.5_0000351g0100 Nicotiana tabacum HOM05D003521 ORTHO05D000476 7.6e-271 937.6 1023 58.9
Nn2g11676 Nelumbo nucifera HOM05D003521 ORTHO05D000476 1.3e-270 936.8 1006 60.2
Glyma.13G356900 Glycine max HOM05D003521 ORTHO05D000476 2.2e-270 936.0 994 63.8
CARHR143590 Cardamine hirsuta HOM05D003521 ORTHO05D000476 8.4e-270 934.1 980 61.0
A07p26350 Brassica napus HOM05D003521 ORTHO05D000476 2.1e-268 929.5 954 63.2
Aa31LG4G110 Aethionema arabicum HOM05D003521 ORTHO05D000476 6.0e-268 927.9 1002 61.5
AUR62011668 Chenopodium quinoa HOM05D003521 ORTHO05D000476 4.3e-266 921.8 985 60.4
AUR62016491 Chenopodium quinoa HOM05D003521 ORTHO05D000476 1.3e-265 920.2 977 62.6
Cc04_g03000 Coffea canephora HOM05D003521 ORTHO05D000476 1.3e-265 920.2 995 63.3
Aqoxy7G01582 Aquilegia oxysepala HOM05D003521 ORTHO05D000476 1.6e-265 919.8 975 60.7
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 5.3e-264 914.8 1063 58.9
Migut.D01015 Erythranthe guttata HOM05D003521 ORTHO05D000476 2.7e-260 902.5 984 61.6
Sabra01G0155200 Salix brachista HOM05D003521 ORTHO05D000476 2.7e-260 902.5 967 63.6
PGR102G1144 Punica granatum HOM05D003521 ORTHO05D000476 5.1e-259 898.3 964 62.7
Hund00648 Selenicereus undatus HOM05D003521 ORTHO05D000476 6.7e-259 897.9 1018 60.0
SGA_v2.0_scaffold4G02009 Striga asiatica HOM05D003521 ORTHO05D000476 4.8e-257 891.7 997 60.7
HanXRQChr10g0313461 Helianthus annuus HOM05D003521 ORTHO05D000476 2.4e-256 889.4 959 59.6
SalBow7G4780 Salvia bowleyana HOM05D003521 ORTHO05D000476 4.5e-255 885.2 1020 58.3
Migut.I00939 Erythranthe guttata HOM05D003521 ORTHO05D000476 1.7e-254 883.2 1002 58.8
Sed0003107 Sechium edule HOM05D003521 ORTHO05D000476 6.1e-252 874.8 1025 57.9
arahy.Tifrunner.gnm1.ann1.ZR40ID Arachis hypogaea HOM05D003521 ORTHO05D000476 1.4e-251 873.6 991 59.3
Lsat_1_v5_gn_1_35300 Lactuca sativa HOM05D003521 ORTHO05D000476 3.9e-251 872.1 979 60.8
arahy.Tifrunner.gnm1.ann1.A5WQDM Arachis hypogaea HOM05D003521 ORTHO05D000476 4.4e-250 868.6 1136 52.7
MELO3C023279.2 Cucumis melo HOM05D003521 ORTHO05D000476 7.4e-250 867.8 1025 58.0
CAN.G1152.8 Capsicum annuum HOM05D003521 ORTHO05D000476 6.3e-249 864.8 1025 57.4
Sopen06g024880 Solanum pennellii HOM05D003521 ORTHO05D000476 1.8e-248 863.2 1025 56.7
EL10Ac9g22035 Beta vulgaris HOM05D003521 ORTHO05D000476 7.0e-248 861.3 959 60.0
ClCG02G000820 Citrullus lanatus HOM05D003521 ORTHO05D000476 1.5e-247 860.1 1026 57.0
PSO386G0042 Papaver somniferum HOM05D003521 ORTHO05D000476 3.4e-247 859.0 1006 58.4
MSTRG.22661 Avicennia marina HOM05D003521 ORTHO05D000476 4.5e-247 858.6 966 61.1
HanXRQChr04g0096181 Helianthus annuus HOM05D003521 ORTHO05D000476 2.2e-246 856.3 984 58.2
arahy.Tifrunner.gnm1.ann1.60NISA Arachis hypogaea HOM05D003521 ORTHO05D000476 6.5e-246 854.7 758 68.6
Sed0014905 Sechium edule HOM05D003521 ORTHO05D000476 6.5e-246 854.7 1025 56.9
ECA234G0658 Erigeron canadensis HOM05D003521 ORTHO05D000476 1.6e-244 850.1 959 59.7
PSO210G6795 Papaver somniferum HOM05D003521 ORTHO05D000476 1.8e-243 846.7 1017 57.0
HanXRQChr12g0360801 Helianthus annuus HOM05D003521 ORTHO05D000476 5.2e-243 845.1 946 61.1
Solyc06g066610.4 Solanum lycopersicum HOM05D003521 ORTHO05D000476 5.2e-243 845.1 1026 56.2
ECA247G0039 Erigeron canadensis HOM05D003521 ORTHO05D000476 7.4e-242 841.3 1011 56.5
Lsat_1_v5_gn_5_130960 Lactuca sativa HOM05D003521 ORTHO05D000476 3.7e-241 839.0 948 61.8
SGA_v2.0_scaffold68G22978 Striga asiatica HOM05D003521 ORTHO05D000476 8.2e-241 837.8 1002 56.6
Lj5C57T13 Lonicera japonica HOM05D003521 ORTHO05D000476 1.4e-240 837.0 994 60.0
Lalb_Chr04g0262811 Lupinus albus HOM05D003521 ORTHO05D000476 4.5e-239 832.0 1009 55.4
DCAR_016209 Daucus carota HOM05D003521 ORTHO05D000476 1.3e-238 830.5 971 60.1
Hund06634 Selenicereus undatus HOM05D003521 ORTHO05D000476 2.2e-238 829.7 1015 56.6
CsaV3_2G017940 Cucumis sativus L. HOM05D003521 ORTHO05D000476 2.9e-238 829.3 1024 56.0
arahy.Tifrunner.gnm1.ann1.M6JGC2 Arachis hypogaea HOM05D003521 ORTHO05D000476 1.0e-230 804.3 998 58.7
Actinidia24741 Actinidia chinensis HOM05D003521 ORTHO05D000476 2.2e-230 803.1 974 57.3
ATR0315G089 Amborella trichopoda HOM05D003521 ORTHO05D000476 1.7e-222 776.9 955 54.9
unitig_62.g23765 Utricularia gibba HOM05D003521 ORTHO05D000476 3.8e-222 775.8 980 54.5
CDE02G1875 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 5.0e-222 775.4 984 54.2
Zm00001eb295600 Zea mays HOM05D003521 ORTHO05D000476 2.0e-210 736.9 1058 49.6
ECA232G1585 Erigeron canadensis HOM05D003521 ORTHO05D000142 4.6e-207 725.7 956 55.1
Os05g0559900 Oryza sativa ssp. japonica HOM05D003521 ORTHO05D000476 4.3e-205 719.2 1042 50.1
SHI10997 Sapria himalayana HOM05D003521 ORTHO05D000476 1.4e-200 704.1 1040 48.0
Cpa.g.sc1513.1 Carica papaya HOM05D003521 ORTHO05D000476 4.7e-180 636.0 481 77.8
HanXRQChr16g0500841 Helianthus annuus HOM05D003521 ORTHO05D000476 1.4e-171 607.8 865 50.4
Mapoly0013s0180 Marchantia polymorpha HOM05D003521 ORTHO05D000476 4.0e-171 606.3 982 45.8
Pp3c12_5050 Physcomitrium patens HOM05D003521 ORTHO05D000476 5.5e-160 569.3 965 45.2
AagrBONN_evm.TU.Sc2ySwM_344.1927 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.1e-152 545.0 618 60.4
HPP92_003835 Vanilla planifolia HOM05D003521 ORTHO05D000476 2.5e-149 533.9 549 61.9
CDE08G0748 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 1.9e-144 517.7 771 49.8
Pp3c4_15860 Physcomitrium patens HOM05D003521 ORTHO05D000476 3.2e-128 463.8 938 41.0
CBR_g16051 Chara braunii HOM05D003521 ORTHO05D000476 1.4e-110 405.2 1013 36.3
Zm00001eb343520 Zea mays HOM05D003521 ORTHO05D000476 1.5e-109 401.7 391 63.7
Oeu024073.1 Olea europaea HOM05D003521 ORTHO05D000476 6.2e-71 273.5 503 45.1
unitig_46.g18558 Utricularia gibba HOM05D003521 ORTHO05D000476 1.9e-67 261.9 525 42.7
CAN.G395.28 Capsicum annuum HOM05D003521 ORTHO05D000476 5.3e-62 243.8 342 51.8
Ca_01143_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 3.4e-61 241.1 315 55.2
TPR.G5155 Trifolium pratense HOM05D003521 ORTHO05D000476 5.4e-51 207.2 137 86.9
Lsat_1_v5_gn_4_102620 Lactuca sativa HOM05D003521 ORTHO05D000476 1.6e-50 205.7 158 75.3
CDE08G0544 Ceratophyllum demersum HOM05D003521 ORTHO05D000476 6.0e-50 203.8 202 61.9
Cpa.g.c33209.1 Carica papaya HOM05D003521 ORTHO05D000476 2.4e-46 191.8 375 40.0
PRCOL_00000677 Prasinoderma coloniale HOM05D003521 ORTHO05D000476 1.5e-40 172.6 628 31.1
Ca_25389_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.4e-38 166.0 231 51.5
SMO298G0028 Selaginella moellendorffii HOM05D003521 ORTHO05D000476 2.9e-36 158.3 361 37.1
Lsat_1_v5_gn_4_178240 Lactuca sativa HOM05D003521 ORTHO05D000476 2.7e-34 151.8 120 75.8
CAN.G135.35 Capsicum annuum HOM05D003521 ORTHO05D000476 3.0e-33 148.3 210 49.0
Cpa.g.c29821 Carica papaya HOM05D003521 ORTHO05D000476 9.7e-32 143.3 135 67.4
Zm00001eb343530 Zea mays HOM05D003521 ORTHO05D000476 2.8e-31 141.7 500 31.4
CARHR143550 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.7e-28 132.5 197 45.2
MELO3C034685.2 Cucumis melo HOM05D003521 ORTHO05D000476 6.5e-28 130.6 88 78.4
Lsat_1_v5_gn_4_102580 Lactuca sativa HOM05D003521 ORTHO05D000476 4.2e-27 127.9 423 32.9
SEGI_27505 Sequoiadendron giganteum HOM05D003521 ORTHO05D000476 4.2e-27 127.9 421 32.5
Cre03.g187000 Chlamydomonas reinhardtii HOM05D003521 ORTHO05D000476 7.2e-27 127.1 689 28.6
HanXRQChr16g0500831 Helianthus annuus HOM05D003521 ORTHO05D000476 9.4e-27 126.7 87 78.2
Oeu024072.1 Olea europaea HOM05D003521 ORTHO05D000476 4.6e-26 124.4 372 36.0
AagrBONN_evm.TU.Sc2ySwM_344.1934 Anthoceros agrestis HOM05D003521 ORTHO05D000476 1.1e-24 119.8 358 32.4
Actinidia32725 Actinidia chinensis HOM05D003521 ORTHO05D000476 1.5e-24 119.4 104 66.3
TPR.G19044 Trifolium pratense HOM05D003521 ORTHO05D000476 3.3e-24 118.2 75 88.0
arahy.Tifrunner.gnm1.ann1.J2PPD0 Arachis hypogaea HOM05D003521 ORTHO05D000476 2.8e-23 115.2 99 67.7
Dinv38016 Davidia involucrata HOM05D003521 ORTHO05D000476 4.8e-23 114.4 118 61.0
Medtr2g043010 Medicago truncatula HOM05D003521 ORTHO05D000476 6.9e-22 110.5 163 50.3
HanXRQChr11g0325911 Helianthus annuus HOM05D003521 ORTHO05D000476 5.9e-21 107.5 84 70.2
arahy.Tifrunner.gnm1.ann1.SA7FDN Arachis hypogaea HOM05D003521 ORTHO05D000476 5.0e-20 104.4 63 85.7
MCO14G500 Micromonas commoda HOM05D003521 ORTHO05D000476 6.5e-20 104.0 597 29.3
CBR_g37651 Chara braunii HOM05D003521 ORTHO05D000476 4.2e-19 101.3 694 25.5
Ca_16259_v3 Cicer arietinum L. HOM05D001034 ORTHO05D000476 1.2e-18 99.8 72 79.2
Ca_31247_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.2e-18 99.8 73 78.1
CARHR212390 Cardamine hirsuta HOM05D003521 ORTHO05D000476 1.8e-17 95.9 97 63.9
Mapoly0111s0038 Marchantia polymorpha HOM05D003521 ORTHO05D000476 1.8e-17 95.9 653 24.5
Lsat_1_v5_gn_4_102600 Lactuca sativa HOM05D003521 ORTHO05D000476 2.0e-16 92.4 74 73.0
Lsat_1_v5_gn_2_62580 Lactuca sativa HOM05D003521 ORTHO05D000476 9.7e-16 90.1 60 85.0
TPR.G7293 Trifolium pratense HOM05D003521 ORTHO05D000476 1.3e-15 89.7 165 44.8
BolC1t05061H Brassica oleracea HOM05D003521 ORTHO05D000476 1.7e-15 89.4 73 72.6
unitig_52.g17085 Utricularia gibba HOM05D003521 ORTHO05D000476 8.2e-15 87.0 138 48.6
PSO596G0006 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-13 82.8 71 69.0
PSO596G0043 Papaver somniferum HOM05D003521 ORTHO05D000476 1.6e-13 82.8 71 69.0
Ca_25015_v3 Cicer arietinum L. HOM05D003521 ORTHO05D000476 1.0e-12 80.1 52 86.5
C09p10740 Brassica napus HOM05D003521 ORTHO05D000476 1.5e-11 76.3 72 66.7
HanXRQChr07g0187491 Helianthus annuus HOM05D003521 ORTHO05D000476 5.5e-11 74.3 79 59.5
HanXRQChr01g0011031 Helianthus annuus HOM05D003521 ORTHO05D000476 1.1e-08 66.6 45 77.8
AagrBONN_evm.TU.Sc2ySwM_344.1936 Anthoceros agrestis HOM05D003521 ORTHO05D000476 2.8e-07 62.0 166 40.4
unitig_52.g17084 Utricularia gibba HOM05D003521 ORTHO05D000476 7.0e-06 57.4 50 60.0


User provided reference genes

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