Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0747 Tripterygium wilfordii HOM05D004786 ORTHO05D005582 1.3e-64 249.6 129 100.0
Gorai.011G094200 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.0e-56 223.4 129 89.9
Duzib147G1635 Durio zibethinus HOM05D004786 ORTHO05D005582 1.7e-56 222.6 129 89.9
Gohir.D10G086000 Gossypium hirsutum HOM05D004786 ORTHO05D005582 2.2e-56 222.2 129 89.1
COL.COLO4_29184 Corchorus olitorius HOM05D004786 ORTHO05D005582 5.0e-56 221.1 129 89.9
Manes.02G090900 Manihot esculenta HOM05D004786 ORTHO05D005582 6.5e-56 220.7 129 87.6
Ciclev10002837m.g Citrus clementina HOM05D004786 ORTHO05D005582 4.2e-55 218.0 130 90.0
Ciclev10022845m.g Citrus clementina HOM05D004786 ORTHO05D005582 1.6e-54 216.1 130 89.2
Thecc.04G020200 Theobroma cacao HOM05D004786 ORTHO05D005582 2.1e-54 215.7 129 87.6
Atru.chr5.1041 Acer truncatum HOM05D004786 ORTHO05D005582 3.6e-54 214.9 130 88.5
Potri.014G122500 Populus trichocarpa HOM05D004786 ORTHO05D005582 4.7e-54 214.5 130 87.7
Cc06_g14210 Coffea canephora HOM05D004786 ORTHO05D005582 6.1e-54 214.2 129 85.3
Gorai.001G266700 Gossypium raimondii HOM05D004786 ORTHO05D005582 1.4e-53 213.0 129 84.5
CSS0028094 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.3e-53 212.2 129 82.2
Haze_05017 Corylus avellana HOM05D004786 ORTHO05D005582 2.3e-53 212.2 124 87.1
Sabra14G0090900 Salix brachista HOM05D004786 ORTHO05D005582 5.2e-53 211.1 130 87.7
Dinv27220 Davidia involucrata HOM05D004786 ORTHO05D005582 1.1e-52 209.9 129 82.9
Cpa.g.sc18.18 Carica papaya HOM05D004786 ORTHO05D005582 1.5e-52 209.5 130 86.9
Oeu047382.1 Olea europaea HOM05D004786 ORTHO05D005582 2.6e-52 208.8 129 82.2
QL12p029078 Quercus lobata HOM05D004786 ORTHO05D005582 2.6e-52 208.8 124 84.7
Rhsim01G0289800 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.3e-52 208.4 129 80.6
CiPaw.08G091100 Carya illinoinensis HOM05D004786 ORTHO05D005582 5.7e-52 207.6 124 85.5
Gohir.A10G101800 Gossypium hirsutum HOM05D004786 ORTHO05D005582 7.4e-52 207.2 129 86.0
vmacro02412 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 7.4e-52 207.2 129 83.7
QL02p082487 Quercus lobata HOM05D004786 ORTHO05D005582 1.3e-51 206.5 124 83.9
Migut.D00095 Erythranthe guttata HOM05D004786 ORTHO05D005582 2.2e-51 205.7 129 79.1
HanXRQChr01g0000811 Helianthus annuus HOM05D004786 ORTHO05D005582 1.1e-50 203.4 128 82.0
Nitab4.5_0002158g0250 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.4e-50 203.0 129 79.8
Nitab4.5_0007940g0040 Nicotiana tabacum HOM05D004786 ORTHO05D005582 1.4e-50 203.0 129 79.8
CAN.G1164.25 Capsicum annuum HOM05D004786 ORTHO05D005582 1.8e-50 202.6 125 81.6
RcHm_v2.0_Chr7g0241821 Rosa chinensis HOM05D004786 ORTHO05D005582 1.8e-50 202.6 126 83.3
TAR636G2395 Trochodendron aralioides HOM05D004786 ORTHO05D005582 1.8e-50 202.6 129 80.6
vmacro15120 Vaccinium macrocarpon HOM05D004786 ORTHO05D005582 1.8e-50 202.6 129 79.1
CSS0001467 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.4e-50 202.2 129 79.8
CSS0006628 Camellia sinensis var. sinensis HOM05D004786 ORTHO05D005582 2.4e-50 202.2 129 79.8
Nn4g25644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 2.4e-50 202.2 131 80.9
RcHm_v2.0_Chr4g0410491 Rosa chinensis HOM05D004786 ORTHO05D005582 2.4e-50 202.2 126 83.3
Prupe.2G036200 Prunus persica HOM05D004786 ORTHO05D005582 3.1e-50 201.8 124 83.1
Rhsim13G0006100 Rhododendron simsii HOM05D004786 ORTHO05D005582 3.1e-50 201.8 129 82.9
FAN13G1587 Fragaria x ananassa HOM05D004786 ORTHO05D005582 4.1e-50 201.4 126 82.5
Peaxi162Scf00736g00421 Petunia axillaris HOM05D004786 ORTHO05D005582 5.3e-50 201.1 129 79.1
Solyc02g078300.3 Solanum lycopersicum HOM05D004786 ORTHO05D005582 5.3e-50 201.1 126 80.2
Sopen02g023150 Solanum pennellii HOM05D004786 ORTHO05D005582 5.3e-50 201.1 126 80.2
PGSC0003DMG400029688 Solanum tuberosum HOM05D004786 ORTHO05D005582 5.3e-50 201.1 126 80.2
Ca_01909_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.6e-49 199.5 124 83.1
Aqoxy5G00800 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.0e-49 199.1 126 81.7
Glyma.10G001200 Glycine max HOM05D004786 ORTHO05D005582 2.0e-49 199.1 124 83.1
Hma1.2p1_0089F.1_g045460 Hydrangea macrophylla HOM05D004786 ORTHO05D005582 2.0e-49 199.1 127 80.3
PGR142G0252 Punica granatum HOM05D004786 ORTHO05D005582 2.0e-49 199.1 124 80.6
THA.LOC104801297 Tarenaya hassleriana HOM05D004786 ORTHO05D005582 2.6e-49 198.7 130 82.3
MSTRG.21673 Avicennia marina HOM05D004786 ORTHO05D005582 3.5e-49 198.4 130 80.0
CANSAT01G0603 Cannabis sativa HOM05D004786 ORTHO05D005582 4.5e-49 198.0 122 82.8
Lj5g0024614 Lotus japonicus HOM05D004786 ORTHO05D005582 4.5e-49 198.0 124 81.5
DCAR_002518 Daucus carota HOM05D004786 ORTHO05D005582 5.9e-49 197.6 129 77.5
FvH4_5g39500 Fragaria vesca HOM05D004786 ORTHO05D005582 5.9e-49 197.6 126 82.5
FAN18G2645 Fragaria x ananassa HOM05D004786 ORTHO05D005582 5.9e-49 197.6 126 82.5
Glyma.10G014500 Glycine max HOM05D004786 ORTHO05D005582 5.9e-49 197.6 124 82.3
Atru.chr2.1244 Acer truncatum HOM05D004786 ORTHO05D005582 1.0e-48 196.8 130 80.8
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 1.0e-48 196.8 131 78.6
Atru.chr5.1040 Acer truncatum HOM05D004786 ORTHO05D005582 1.7e-48 196.1 130 80.8
Phvul.007G215700 Phaseolus vulgaris HOM05D004786 ORTHO05D005582 2.2e-48 195.7 124 80.6
Solyc02g078285.1 Solanum lycopersicum HOM05D004786 ORTHO05D005582 2.9e-48 195.3 126 78.6
CsaV3_7G029840 Cucumis sativus L. HOM05D004786 ORTHO05D005582 3.8e-48 194.9 124 79.0
GSVIVG01028095001 Vitis vinifera HOM05D004786 ORTHO05D005582 5.0e-48 194.5 147 70.7
Atru.chr2.1242 Acer truncatum HOM05D004786 ORTHO05D005582 6.5e-48 194.1 130 80.0
Nn3g21644 Nelumbo nucifera HOM05D004786 ORTHO05D005582 6.5e-48 194.1 129 77.5
Actinidia21415 Actinidia chinensis HOM05D004786 ORTHO05D005582 8.5e-48 193.7 133 78.2
arahy.Tifrunner.gnm1.ann1.QQF2XI Arachis hypogaea HOM05D004786 ORTHO05D005582 1.5e-47 193.0 124 79.0
MELO3C015937.2 Cucumis melo HOM05D004786 ORTHO05D005582 3.2e-47 191.8 124 78.2
ECA248G3582 Erigeron canadensis HOM05D004786 ORTHO05D005582 3.2e-47 191.8 116 81.9
arahy.Tifrunner.gnm1.ann1.7GX23T Arachis hypogaea HOM05D004786 ORTHO05D005582 5.5e-47 191.0 124 79.0
arahy.Tifrunner.gnm1.ann1.BSR60Q Arachis hypogaea HOM05D004786 ORTHO05D005582 7.2e-47 190.7 124 78.2
Eucgr.C00116 Eucalyptus grandis HOM05D004786 ORTHO05D005582 7.2e-47 190.7 126 78.6
Ca_10295_v3 Cicer arietinum L. HOM05D004786 ORTHO05D005582 1.2e-46 189.9 124 78.2
SGA_v2.0_scaffold376G50268 Striga asiatica HOM05D004786 ORTHO05D005582 2.1e-46 189.1 136 72.1
Ah.11g049360 Amaranthus hybridus HOM05D004786 ORTHO05D005582 4.7e-46 188.0 130 76.2
Lalb_Chr11g0063261 Lupinus albus HOM05D004786 ORTHO05D005582 4.7e-46 188.0 124 79.8
arahy.Tifrunner.gnm1.ann1.U8589F Arachis hypogaea HOM05D004786 ORTHO05D005582 8.0e-46 187.2 124 76.6
PSO478G0620 Papaver somniferum HOM05D004786 ORTHO05D005582 8.0e-46 187.2 131 75.6
TPR.G19757 Trifolium pratense HOM05D004786 ORTHO05D005582 1.0e-45 186.8 124 75.8
PSO017G1185 Papaver somniferum HOM05D004786 ORTHO05D005582 5.2e-45 184.5 131 74.8
CANSAT01G2201 Cannabis sativa HOM05D004786 ORTHO05D005582 1.2e-44 183.3 122 77.9
unitig_736.g22945 Utricularia gibba HOM05D004786 ORTHO05D005582 1.2e-44 183.3 140 70.0
ClCG09G005230 Citrullus lanatus HOM05D004786 ORTHO05D005582 1.5e-44 183.0 131 73.3
AUR62024675 Chenopodium quinoa HOM05D004786 ORTHO05D005582 2.0e-44 182.6 126 75.4
CDE02G4247 Ceratophyllum demersum HOM05D004786 ORTHO05D005582 2.6e-44 182.2 129 76.0
SalBow3G4092 Salvia bowleyana HOM05D004786 ORTHO05D005582 4.4e-44 181.4 129 77.5
Sed0001914 Sechium edule HOM05D004786 ORTHO05D005582 5.7e-44 181.0 124 72.6
EL10As5g23505 Beta vulgaris HOM05D004786 ORTHO05D005582 1.3e-43 179.9 130 73.1
FAN14G2614 Fragaria x ananassa HOM05D004786 ORTHO05D005582 1.3e-43 179.9 106 83.0
PSO478G2484 Papaver somniferum HOM05D004786 ORTHO05D005582 1.3e-43 179.9 131 73.3
Oeu005869.1 Olea europaea HOM05D004786 ORTHO05D005582 6.3e-43 177.6 122 73.0
SEGI_16103 Sequoiadendron giganteum HOM05D004786 ORTHO05D005582 8.2e-43 177.2 126 69.0
Zm00001eb131310 Zea mays HOM05D004786 ORTHO05D005582 1.4e-42 176.4 108 81.5
Hund02934 Selenicereus undatus HOM05D004786 ORTHO05D005582 2.4e-42 175.6 167 61.1
Sc05g0000530 Simmondsia chinensis HOM05D004786 ORTHO05D005582 2.4e-42 175.6 132 73.5
PSO339G0583 Papaver somniferum HOM05D004786 ORTHO05D005582 3.1e-42 175.3 132 68.9
Thhalv10009111m.g Eutrema salsugineum HOM05D004786 ORTHO05D005582 4.1e-42 174.9 129 72.1
Sp1g01660 Schrenkiella parvula HOM05D004786 ORTHO05D005582 5.3e-42 174.5 129 72.1
BcaC07g36997 Brassica carinata HOM05D004786 ORTHO05D005582 7.0e-42 174.1 129 68.2
C08p00190 Brassica napus HOM05D004786 ORTHO05D005582 7.0e-42 174.1 129 68.2
BolC8t46821H Brassica oleracea HOM05D004786 ORTHO05D005582 7.0e-42 174.1 129 68.2
Os01g0338100 Oryza sativa ssp. japonica HOM05D004786 ORTHO05D005582 7.0e-42 174.1 108 80.6
PSO384G2419 Papaver somniferum HOM05D004786 ORTHO05D005582 1.2e-41 173.3 132 69.7
Aqoxy2G02794 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.7e-41 172.2 120 71.7
A10p01370 Brassica napus HOM05D004786 ORTHO05D005582 2.7e-41 172.2 130 71.5
BolC5t28917H Brassica oleracea HOM05D004786 ORTHO05D005582 1.7e-40 169.5 120 74.2
Psat6g162520 Pisum sativum HOM05D004786 ORTHO05D005582 1.7e-40 169.5 125 72.8
Aqoxy293s004 Aquilegia oxysepala HOM05D004786 ORTHO05D005582 2.2e-40 169.1 156 63.5
AL1G12010 Arabidopsis lyrata HOM05D004786 ORTHO05D005582 3.8e-40 168.3 125 72.8
C05p01350 Brassica napus HOM05D004786 ORTHO05D005582 5.0e-40 167.9 119 73.9
BraA10t42413Z Brassica rapa HOM05D004786 ORTHO05D005582 5.0e-40 167.9 130 70.0
Gohir.A07G224200 Gossypium hirsutum HOM05D004786 ORTHO05D005582 5.0e-40 167.9 92 90.2
Medtr1g087370 Medicago truncatula HOM05D004786 ORTHO05D005582 5.0e-40 167.9 124 70.2
A08p37600 Brassica napus HOM05D004786 ORTHO05D005582 1.1e-39 166.8 129 66.7
BraA08t35657Z Brassica rapa HOM05D004786 ORTHO05D005582 1.1e-39 166.8 129 66.7
Glyma.10G002500 Glycine max HOM05D004786 ORTHO05D005582 1.1e-39 166.8 104 81.7
SHI21583 Sapria himalayana HOM05D004786 ORTHO05D005582 1.1e-39 166.8 120 74.2
CARHR001960 Cardamine hirsuta HOM05D004786 ORTHO05D005582 3.2e-39 165.2 120 72.5
Carub.0001s0173 Capsella rubella HOM05D004786 ORTHO05D005582 4.2e-39 164.9 122 72.1
AUR62011833 Chenopodium quinoa HOM05D004786 ORTHO05D005582 9.4e-39 163.7 167 56.9
Aa31LG1G9890 Aethionema arabicum HOM05D004786 ORTHO05D005582 1.2e-38 163.3 163 58.3
AT1G02680 Arabidopsis thaliana HOM05D004786 ORTHO05D005582 3.0e-37 158.7 124 65.3
TAR633G1250 Trochodendron aralioides HOM05D004786 ORTHO05D005582 2.0e-36 156.0 95 81.1
FvH4_6g14960 Fragaria vesca HOM05D004786 ORTHO05D005582 7.5e-36 154.1 87 85.1
AagrBONN_evm.TU.Sc2ySwM_228.4423 Anthoceros agrestis HOM05D004786 ORTHO05D005582 3.7e-35 151.8 111 64.9
Mapoly0033s0143 Marchantia polymorpha HOM05D004786 ORTHO05D005582 6.3e-35 151.0 120 65.0
DCAR_030468 Daucus carota HOM05D004786 ORTHO05D005582 2.4e-34 149.1 96 78.1
AagrBONN_evm.TU.Sc2ySwM_362.2238 Anthoceros agrestis HOM05D004786 ORTHO05D005582 9.1e-34 147.1 114 62.3
Lsat_1_v5_gn_3_69620 Lactuca sativa HOM05D004786 ORTHO05D005582 9.1e-34 147.1 125 66.4
AagrBONN_evm.TU.Sc2ySwM_344.2318 Anthoceros agrestis HOM05D004786 ORTHO05D005582 2.0e-33 146.0 126 60.3
Mapoly0066s0092 Marchantia polymorpha HOM05D004786 ORTHO05D005582 7.7e-33 144.1 128 59.4
Pp3c10_23650 Physcomitrium patens HOM05D004786 ORTHO05D005582 1.0e-32 143.7 110 60.0
HPP92_025545 Vanilla planifolia HOM05D004786 ORTHO05D005582 2.5e-31 139.0 90 77.8
CBR_g31434 Chara braunii HOM05D004977 ORTHO05D006454 7.2e-31 137.5 101 63.4
Pp3c20_20300 Physcomitrium patens HOM05D004786 ORTHO05D005582 9.5e-31 137.1 130 53.8
arahy.Tifrunner.gnm1.ann1.8ER521 Arachis hypogaea HOM05D004786 ORTHO05D005582 3.6e-30 135.2 124 61.3
ATR0068G032 Amborella trichopoda HOM05D004786 ORTHO05D005582 6.1e-30 134.4 93 73.1
arahy.Tifrunner.gnm1.ann1.NH5DW8 Arachis hypogaea HOM05D004786 ORTHO05D005582 1.4e-29 133.3 127 59.8
SMO172G0161 Selaginella moellendorffii HOM05D004786 ORTHO05D005582 2.6e-28 129.0 117 55.6
VMungo0720G3029 Vigna mungo HOM05D003159 ORTHO05D005582 7.5e-28 127.5 126 58.7
Actinidia12745 Actinidia chinensis HOM05D004786 ORTHO05D005582 1.3e-27 126.7 82 79.3
HanXRQChr04g0094601 Helianthus annuus HOM05D004786 ORTHO05D005582 8.3e-27 124.0 83 77.1
BcaB03g13505 Brassica carinata HOM05D004786 ORTHO05D005582 5.9e-25 117.9 76 77.6
BcaB03g15799 Brassica carinata HOM05D004786 ORTHO05D005582 2.9e-24 115.5 92 66.3
MD02G1287100 Malus domestica HOM05D004786 ORTHO05D005582 6.6e-24 114.4 69 81.2
HPP92_025439 Vanilla planifolia HOM05D004786 ORTHO05D005582 6.6e-24 114.4 63 84.1
PGSC0003DMG400028899 Solanum tuberosum HOM05D000457 ORTHO05D000560 9.5e-23 110.5 134 48.5
MCO05G258 Micromonas commoda HOM05D004786 ORTHO05D005582 3.0e-21 105.5 119 47.1
Solyc06g036200.2 Solanum lycopersicum HOM05D004786 ORTHO05D005582 8.9e-21 104.0 97 55.7
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 7.0e-18 94.4 61 75.4
arahy.Tifrunner.gnm1.ann1.17AZVE Arachis hypogaea HOM05D004786 ORTHO05D005582 9.2e-18 94.0 124 47.6
PRCOL_00006976 Prasinoderma coloniale HOM05D004786 ORTHO05D005582 1.6e-17 93.2 115 40.0
Haze_27741 Corylus avellana HOM05D004786 ORTHO05D005582 6.6e-16 87.8 89 47.2
Dinv10078 Davidia involucrata HOM05D004786 ORTHO05D005582 2.5e-15 85.9 70 61.4
Cre04.g222100 Chlamydomonas reinhardtii HOM05D004786 ORTHO05D005582 3.6e-14 82.0 114 42.1
MD02G1287200 Malus domestica HOM05D004786 ORTHO05D005582 1.3e-11 73.6 47 80.9
Gohir.D07G231500 Gossypium hirsutum HOM05D004786 ORTHO05D005582 3.7e-11 72.0 65 60.0
Cfa022415 Carpinus fangiana HOM05D004786 ORTHO05D005582 4.1e-10 68.6 93 33.3
SEGI_38506 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 8.6e-08 60.8 35 82.9


User provided reference genes

Program Settings