Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.8e-247 858.2 456 100.0
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 3.4e-224 781.6 456 91.9
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.8e-194 681.4 456 78.5
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 8.7e-188 660.6 445 77.1
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.5e-187 659.8 456 76.3
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 1.4e-185 653.3 461 75.3
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 1.4e-185 653.3 455 74.5
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 3.1e-185 652.1 457 74.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 4.0e-185 651.7 459 75.6
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 6.9e-185 651.0 462 75.3
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 2.9e-183 645.6 458 74.7
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 1.9e-182 642.9 440 75.9
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 5.5e-182 641.3 456 75.4
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-181 640.2 456 75.2
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 1.2e-181 640.2 456 75.7
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.6e-181 639.8 456 74.1
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 4.6e-181 638.3 456 74.1
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 5.1e-180 634.8 458 72.9
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 5.1e-180 634.8 457 75.9
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.5e-179 633.3 456 71.9
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 3.3e-179 632.1 456 73.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 7.4e-179 630.9 456 72.8
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 2.8e-178 629.0 457 74.4
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 8.2e-178 627.5 459 74.7
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.8e-177 626.3 456 72.4
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 2.0e-176 622.9 455 73.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 3.4e-176 622.1 464 73.5
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 5.8e-176 621.3 457 71.3
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 4.9e-175 618.2 459 73.0
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 6.5e-175 617.8 460 70.9
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 8.4e-175 617.5 457 72.9
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 1.4e-174 616.7 456 74.3
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.9e-174 616.3 454 72.2
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 4.2e-174 615.1 459 73.2
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 4.2e-174 615.1 465 72.3
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 4.2e-174 615.1 461 72.5
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 4.2e-174 615.1 457 72.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.2e-173 613.6 458 73.4
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.1e-173 612.8 434 75.6
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 3.5e-173 612.1 458 71.4
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.3e-172 610.1 457 71.8
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.3e-172 609.4 457 71.6
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 3.0e-172 609.0 460 71.1
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 3.0e-172 609.0 456 72.6
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 3.0e-172 609.0 444 71.6
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 3.9e-172 608.6 460 71.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.1e-171 607.1 456 70.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 4.8e-170 601.7 454 70.0
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.4e-169 599.4 465 70.3
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.1e-169 599.0 465 70.3
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.3e-169 598.2 465 70.3
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 9.0e-169 597.4 448 70.5
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 3.4e-168 595.5 457 69.6
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.4e-168 595.5 445 71.7
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 6.5e-167 591.3 459 69.3
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 8.5e-167 590.9 463 70.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.5e-166 589.3 456 69.3
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 2.5e-166 589.3 456 68.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 2.1e-165 586.3 456 70.4
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.9e-165 584.3 457 68.7
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 2.3e-164 582.8 456 66.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.0e-164 582.4 458 70.3
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.7e-164 581.3 456 69.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 8.7e-164 580.9 362 82.3
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.3e-163 578.9 461 69.6
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 4.3e-163 578.6 458 68.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 5.7e-163 578.2 456 69.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 7.4e-163 577.8 461 67.7
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.8e-162 575.9 461 67.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 4.8e-162 575.1 457 68.7
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 8.2e-162 574.3 456 68.2
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.3e-161 571.6 456 68.9
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.4e-160 568.9 457 67.6
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 4.5e-160 568.5 431 68.2
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 5.9e-160 568.2 456 68.2
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.7e-159 566.6 461 68.1
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 2.2e-159 566.2 419 70.2
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 2.9e-159 565.8 419 70.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 6.5e-159 564.7 456 69.1
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 1.1e-158 563.9 456 69.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 1.9e-158 563.1 456 68.6
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-158 563.1 419 70.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 1.9e-158 563.1 456 68.6
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 1.9e-158 563.1 456 68.6
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.5e-158 561.6 446 67.5
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 9.4e-158 560.8 449 68.6
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.6e-157 560.1 468 64.7
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 2.1e-157 559.7 457 67.8
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 2.7e-157 559.3 456 68.0
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.4e-156 557.0 400 73.0
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 448 68.3
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 2.3e-156 556.2 448 68.3
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.1e-156 555.1 457 68.1
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 5.1e-156 555.1 457 68.1
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.3e-154 550.4 456 64.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.4e-153 546.2 447 64.4
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 5.9e-152 541.6 341 79.8
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 7.2e-150 534.6 369 72.9
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-149 533.9 362 76.2
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 2.8e-146 522.7 456 65.1
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 2.0e-144 516.5 457 63.7
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 8.0e-141 504.6 449 63.0
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 6.8e-132 474.9 307 80.1
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.7e-128 463.0 320 74.4
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 5.9e-128 461.8 311 77.5
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.7e-125 452.2 290 80.0
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.1e-117 426.8 301 72.1
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.1e-117 426.8 394 59.6
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.5e-115 420.6 376 58.5
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 1.5e-115 420.6 371 61.2
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 2.0e-115 420.2 400 56.8
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 2.9e-114 416.4 280 73.9
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.4e-113 412.1 282 74.8
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 5.4e-113 412.1 382 57.1
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 4.6e-112 409.1 378 57.4
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 8.0e-109 398.3 281 75.4
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.5e-102 376.7 319 63.0
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 2.6e-99 366.7 367 55.9
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.7e-98 362.8 368 55.4
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 6.4e-98 362.1 345 57.7
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 7.8e-96 355.1 367 54.0
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 6.6e-95 352.1 384 52.6
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 2.1e-93 347.1 355 53.0
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 3.6e-85 319.7 378 51.1
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 5.8e-83 312.4 396 45.5
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 1.7e-79 300.8 248 64.9
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 7.4e-70 268.9 332 50.6
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 5.0e-50 203.0 150 70.7
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.3e-47 194.1 345 40.6
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-42 178.3 161 57.8
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 6.5e-42 176.0 222 48.2
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.5e-41 172.9 115 72.2
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.9e-35 152.9 92 80.4
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-34 149.8 113 65.5
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.2e-32 145.2 137 55.5
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.0e-31 140.6 171 48.0
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 9.4e-25 119.0 72 84.7
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.3e-22 110.5 87 71.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 8.0e-16 89.4 102 50.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 1.7e-13 81.6 74 54.1
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-11 75.5 73 58.9
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 1.6e-11 75.1 503 23.1


User provided reference genes

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