Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G931 Trifolium pratense HOM05D000142 ORTHO05D008397 2.2e-39 165.2 87 100.0
TPR.G12168 Trifolium pratense HOM05D000142 ORTHO05D008397 1.2e-37 159.5 87 97.7
Psat0s2674g0040 Pisum sativum HOM05D000142 ORTHO05D008397 6.8e-25 117.1 94 76.6
Ca_03215_v3 Cicer arietinum L. HOM05D000142 ORTHO05D008397 5.8e-24 114.0 105 66.7
Medtr3g027140 Medicago truncatula HOM05D000142 ORTHO05D008397 2.9e-23 111.7 93 74.2
Phvul.005G039000 Phaseolus vulgaris HOM05D000142 ORTHO05D008397 1.3e-12 76.3 94 54.3
VMungo1080G1903 Vigna mungo HOM05D000142 ORTHO05D008397 1.5e-11 72.8 94 53.2
Glyma.15G271200 Glycine max HOM05D000142 ORTHO05D008397 2.5e-11 72.0 95 50.5
Lj3g0022647 Lotus japonicus HOM05D000142 ORTHO05D008397 7.3e-11 70.5 87 54.0
Glyma.08G151700 Glycine max HOM05D000142 ORTHO05D008397 1.6e-10 69.3 95 49.5
arahy.Tifrunner.gnm1.ann1.XZ4G98 Arachis hypogaea HOM05D000142 ORTHO05D008397 1.1e-09 66.6 101 48.5
ClCG09G003870 Citrullus lanatus HOM05D000142 ORTHO05D008397 1.1e-09 66.6 71 56.3
Duzib138G1004 Durio zibethinus HOM05D000142 ORTHO05D008397 6.9e-09 63.9 70 50.0
Lalb_Chr25g0283261 Lupinus albus HOM05D000142 ORTHO05D008397 1.2e-08 63.2 105 46.7
Gohir.A05G250800 Gossypium hirsutum HOM05D000142 ORTHO05D008397 1.5e-08 62.8 67 53.7
Gohir.D05G253000 Gossypium hirsutum HOM05D000142 ORTHO05D008397 1.5e-08 62.8 68 52.9
Gorai.009G264000 Gossypium raimondii HOM05D000142 ORTHO05D008397 1.5e-08 62.8 68 52.9
Thecc.01G415000 Theobroma cacao HOM05D000142 ORTHO05D008397 1.5e-08 62.8 71 49.3
Atru.chr11.2667 Acer truncatum HOM05D000142 ORTHO05D008397 2.6e-08 62.0 56 62.5
arahy.Tifrunner.gnm1.ann1.HME85M Arachis hypogaea HOM05D000142 ORTHO05D008397 2.6e-08 62.0 100 44.0
MSTRG.17058 Avicennia marina HOM05D000142 ORTHO05D008397 2.6e-08 62.0 70 52.9
Cc02_g27390 Coffea canephora HOM05D000142 ORTHO05D008397 5.8e-08 60.8 44 68.2
MELO3C023523.2 Cucumis melo HOM05D000142 ORTHO05D008397 7.6e-08 60.5 69 56.5
Sed0018745 Sechium edule HOM05D000142 ORTHO05D008397 7.6e-08 60.5 101 42.6
CsaV3_7G031350 Cucumis sativus L. HOM05D000142 ORTHO05D008397 9.9e-08 60.1 69 56.5
Rhsim07G0053300 Rhododendron simsii HOM05D000142 ORTHO05D008397 1.3e-07 59.7 89 44.9
CSS0002289 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 2.2e-07 58.9 36 75.0
Dinv00377 Davidia involucrata HOM05D000142 ORTHO05D008397 2.9e-07 58.5 44 70.5
FAN01G0466 Fragaria x ananassa HOM05D000142 ORTHO05D008397 2.9e-07 58.5 50 62.0
FAN01G1726 Fragaria x ananassa HOM05D000142 ORTHO05D008397 2.9e-07 58.5 50 62.0
MD02G1316800 Malus domestica HOM05D000142 ORTHO05D008397 2.9e-07 58.5 57 56.1
MD07G1005200 Malus domestica HOM05D000142 ORTHO05D008397 2.9e-07 58.5 57 56.1
SGA_v2.0_scaffold4G02245 Striga asiatica HOM05D000142 ORTHO05D008397 2.9e-07 58.5 103 42.7
vmacro13641 Vaccinium macrocarpon HOM05D000142 ORTHO05D008397 2.9e-07 58.5 56 55.4
Migut.B01337 Erythranthe guttata HOM05D000142 ORTHO05D008397 3.8e-07 58.2 52 59.6
Actinidia32325 Actinidia chinensis HOM05D000142 ORTHO05D008397 4.9e-07 57.8 83 47.0
COL.COLO4_23905 Corchorus olitorius HOM05D001331 ORTHO05D008397 4.9e-07 57.8 89 41.6
Prupe.2G007400 Prunus persica HOM05D000142 ORTHO05D008397 4.9e-07 57.8 55 56.4
QL04p004780 Quercus lobata HOM05D000142 ORTHO05D008397 4.9e-07 57.8 45 64.4
CSS0030322 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 6.4e-07 57.4 36 72.2
CSS0037404 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 6.4e-07 57.4 36 72.2
MSTRG.20609 Avicennia marina HOM05D000142 ORTHO05D008397 8.4e-07 57.0 39 69.2
Carub.0005s1850 Capsella rubella HOM05D000142 ORTHO05D008397 8.4e-07 57.0 82 42.7
Dinv43474 Davidia involucrata HOM05D000142 ORTHO05D008397 8.4e-07 57.0 63 54.0
HanXRQChr17g0563441 Helianthus annuus HOM05D000142 ORTHO05D008397 8.4e-07 57.0 87 43.7
CARHR161890 Cardamine hirsuta HOM05D000142 ORTHO05D008397 1.1e-06 56.6 89 43.8
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.1e-06 56.6 85 43.5
FvH4_7g00530 Fragaria vesca HOM05D000142 ORTHO05D008397 1.1e-06 56.6 50 60.0
FAN03G0216 Fragaria x ananassa HOM05D000142 ORTHO05D008397 1.1e-06 56.6 50 60.0
FAN06G2501 Fragaria x ananassa HOM05D000142 ORTHO05D008397 1.1e-06 56.6 50 60.0
FAN10G3986 Fragaria x ananassa HOM05D000142 ORTHO05D008397 1.1e-06 56.6 50 60.0
GSVIVG01032039001 Vitis vinifera HOM05D000142 ORTHO05D008397 1.1e-06 56.6 83 41.0
Actinidia31689 Actinidia chinensis HOM05D000142 ORTHO05D008397 1.4e-06 56.2 69 50.7
HanXRQChr01g0017491 Helianthus annuus HOM05D000142 ORTHO05D008397 1.4e-06 56.2 87 42.5
Oeu047543.1 Olea europaea HOM05D000142 ORTHO05D008397 1.4e-06 56.2 53 56.6
CSS0028593 Camellia sinensis var. sinensis HOM05D000142 ORTHO05D008397 1.9e-06 55.8 36 69.4
RcHm_v2.0_Chr1g0314321 Rosa chinensis HOM05D000142 ORTHO05D008397 1.9e-06 55.8 55 54.5
Hund11639 Selenicereus undatus HOM05D000142 ORTHO05D008397 1.9e-06 55.8 37 67.6
TWI73G0088 Tripterygium wilfordii HOM05D000142 ORTHO05D008397 1.9e-06 55.8 84 45.2
unitig_578.g16699 Utricularia gibba HOM05D000142 ORTHO05D008397 1.9e-06 55.8 51 58.8
Manes.10G148200 Manihot esculenta HOM05D000142 ORTHO05D008397 2.4e-06 55.5 36 69.4
Potri.009G065900 Populus trichocarpa HOM05D000142 ORTHO05D008397 2.4e-06 55.5 77 46.8
Atru.chr9.917 Acer truncatum HOM05D001331 ORTHO05D008397 3.2e-06 55.1 95 40.0
CANSAT11G0698 Cannabis sativa HOM05D000142 ORTHO05D008397 4.2e-06 54.7 65 46.2
Cfa010727 Carpinus fangiana HOM05D000142 ORTHO05D008397 4.2e-06 54.7 75 48.0
TAR623G1428 Trochodendron aralioides HOM05D000142 ORTHO05D008397 4.2e-06 54.7 52 55.8
Aqoxy1G00186 Aquilegia oxysepala HOM05D000142 ORTHO05D008397 7.1e-06 53.9 44 65.9
MBI04_g27130_MAGBIO Magnolia biondii HOM05D000142 ORTHO05D008397 7.1e-06 53.9 36 66.7
Nn7g36057 Nelumbo nucifera HOM05D000142 ORTHO05D008397 7.1e-06 53.9 35 71.4
Haze_03246 Corylus avellana HOM05D000142 ORTHO05D008397 9.3e-06 53.5 79 45.6
Hma1.2p1_1745F.1_g300250 Hydrangea macrophylla HOM05D000142 ORTHO05D008397 9.3e-06 53.5 36 69.4


User provided reference genes

Program Settings