Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8796 Trifolium pratense HOM05D001529 ORTHO05D012725 2.4e-23 111.3 56 100.0
Lalb_Chr16g0382401 Lupinus albus HOM05D001529 ORTHO05D003309 1.0e-21 105.9 56 94.6
Ca_04612_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 1.3e-21 105.5 56 94.6
Lj2g0017933 Lotus japonicus HOM05D001529 ORTHO05D003309 1.7e-21 105.1 56 94.6
Psat2g107000 Pisum sativum HOM05D001529 ORTHO05D003309 6.6e-21 103.2 56 91.1
Manes.05G088800 Manihot esculenta HOM05D001529 ORTHO05D003309 8.6e-21 102.8 56 92.9
CsaV3_5G015730 Cucumis sativus L. HOM05D001529 ORTHO05D003309 1.9e-20 101.7 56 91.1
CiPaw.06G073200 Carya illinoinensis HOM05D001529 ORTHO05D003309 3.3e-20 100.9 56 89.3
Lalb_Chr09g0326441 Lupinus albus HOM05D001529 ORTHO05D003309 4.3e-20 100.5 56 89.3
Medtr5g034820 Medicago truncatula HOM05D001529 ORTHO05D003309 4.3e-20 100.5 56 91.1
VMungo1215G0655 Vigna mungo HOM05D001529 ORTHO05D003309 4.3e-20 100.5 56 87.5
ClCG11G000210 Citrullus lanatus HOM05D001529 ORTHO05D003309 7.3e-20 99.8 56 89.3
Sed0004308 Sechium edule HOM05D001529 ORTHO05D003309 9.5e-20 99.4 56 89.3
TAR629G2761 Trochodendron aralioides HOM05D001529 ORTHO05D003309 1.2e-19 99.0 56 89.3
CiPaw.05G147900 Carya illinoinensis HOM05D001529 ORTHO05D003309 1.6e-19 98.6 56 85.7
TWI36G0528 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 1.6e-19 98.6 56 87.5
TWI18G0452 Tripterygium wilfordii HOM05D001529 ORTHO05D003309 2.1e-19 98.2 56 85.7
Phvul.002G072800 Phaseolus vulgaris HOM05D001529 ORTHO05D003309 2.8e-19 97.8 56 85.7
Nn1g08713 Nelumbo nucifera HOM05D001529 ORTHO05D003309 3.6e-19 97.4 56 87.5
GSVIVG01020206001 Vitis vinifera HOM05D001529 ORTHO05D003309 8.0e-19 96.3 56 85.7
Cpa.g.sc258.12 Carica papaya HOM05D001529 ORTHO05D003309 1.0e-18 95.9 56 85.7
PGR102G2790 Punica granatum HOM05D001529 ORTHO05D003309 1.4e-18 95.5 56 85.7
Eucgr.B03357 Eucalyptus grandis HOM05D001529 ORTHO05D003309 1.8e-18 95.1 56 83.9
Nn5g28174 Nelumbo nucifera HOM05D001529 ORTHO05D003309 2.3e-18 94.7 56 85.7
THA.LOC104808916 Tarenaya hassleriana HOM05D001529 ORTHO05D003309 2.3e-18 94.7 56 83.9
TPR.G12365 Trifolium pratense HOM05D001529 ORTHO05D003309 2.3e-18 94.7 56 85.7
QL03p061952 Quercus lobata HOM05D001529 ORTHO05D003309 3.1e-18 94.4 55 83.6
CANSAT01G1270 Cannabis sativa HOM05D001529 ORTHO05D003309 4.0e-18 94.0 56 83.9
Lj3C1050G12 Lonicera japonica HOM05D001529 ORTHO05D003309 4.0e-18 94.0 56 83.9
Ca_05005_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 5.2e-18 93.6 57 84.2
MBI04_g06583_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D003309 6.8e-18 93.2 56 80.4
Aqoxy2G01584 Aquilegia oxysepala HOM05D001529 ORTHO05D012725 8.9e-18 92.8 56 83.9
Aqoxy4G00290 Aquilegia oxysepala HOM05D001529 ORTHO05D003309 8.9e-18 92.8 56 83.9
CDE05G0643 Ceratophyllum demersum HOM05D001529 ORTHO05D003309 8.9e-18 92.8 56 82.1
GSVIVG01014680001 Vitis vinifera HOM05D001529 ORTHO05D003309 2.0e-17 91.7 56 82.1
Lsat_1_v5_gn_4_7120 Lactuca sativa HOM05D001529 ORTHO05D003309 4.4e-17 90.5 56 80.4
LjContig00029g0011661 Lotus japonicus HOM05D001529 ORTHO05D003309 4.4e-17 90.5 56 78.6
THA.LOC104822129 Tarenaya hassleriana HOM05D001529 ORTHO05D003309 4.4e-17 90.5 56 80.4
Glyma.02G032800 Glycine max HOM05D001529 ORTHO05D003309 5.8e-17 90.1 56 80.4
RcHm_v2.0_Chr4g0400731 Rosa chinensis HOM05D001529 ORTHO05D003309 5.8e-17 90.1 56 78.6
Ca_11546_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 7.5e-17 89.7 56 82.1
Ca_15408_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 7.5e-17 89.7 56 76.8
Ca_29881_v3 Cicer arietinum L. HOM05D001529 ORTHO05D003309 7.5e-17 89.7 56 76.8
ECA234G4010 Erigeron canadensis HOM05D001529 ORTHO05D003309 7.5e-17 89.7 56 80.4
ECA240G3521 Erigeron canadensis HOM05D001529 ORTHO05D003309 7.5e-17 89.7 56 80.4
FAN17G1607 Fragaria x ananassa HOM05D001529 ORTHO05D003309 7.5e-17 89.7 56 76.8
Cfa006930 Carpinus fangiana HOM05D001529 ORTHO05D003309 1.3e-16 89.0 56 78.6
Cfa009117 Carpinus fangiana HOM05D001529 ORTHO05D003309 1.3e-16 89.0 56 78.6
Ca_18729_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 1.7e-16 88.6 56 80.4
Ca_28332_v3 Cicer arietinum L. HOM05D001529 ORTHO05D012725 1.7e-16 88.6 56 80.4
HanXRQChr15g0469351 Helianthus annuus HOM05D001529 ORTHO05D003309 1.7e-16 88.6 56 78.6
Haze_12153 Corylus avellana HOM05D001529 ORTHO05D003309 2.2e-16 88.2 56 78.6
HanXRQChr12g0383391 Helianthus annuus HOM05D001529 ORTHO05D003309 2.9e-16 87.8 56 78.6
Potri.010G096500 Populus trichocarpa HOM05D001529 ORTHO05D003309 2.9e-16 87.8 56 82.1
Aqoxy4G01961 Aquilegia oxysepala HOM05D001529 ORTHO05D003309 3.7e-16 87.4 56 80.4
Oeu022552.3 Olea europaea HOM05D001529 ORTHO05D003309 3.7e-16 87.4 56 78.6
TAR629G0445 Trochodendron aralioides HOM05D001529 ORTHO05D012725 3.7e-16 87.4 56 80.4
Glyma.01G032500 Glycine max HOM05D001529 ORTHO05D003309 4.9e-16 87.0 56 76.8
CDE05G3145 Ceratophyllum demersum HOM05D001529 ORTHO05D003309 6.4e-16 86.7 56 76.8
Dinv24886 Davidia involucrata HOM05D001529 ORTHO05D003309 6.4e-16 86.7 56 78.6
Prupe.1G256800 Prunus persica HOM05D001529 ORTHO05D003309 6.4e-16 86.7 56 76.8
FvH4_4g07690 Fragaria vesca HOM05D001529 ORTHO05D003309 8.3e-16 86.3 56 75.0
FAN12G3914 Fragaria x ananassa HOM05D001529 ORTHO05D003309 8.3e-16 86.3 56 75.0
Lsat_1_v5_gn_4_126221 Lactuca sativa HOM05D001529 ORTHO05D003309 8.3e-16 86.3 56 76.8
Thecc.02G246500 Theobroma cacao HOM05D001529 ORTHO05D003309 8.3e-16 86.3 56 78.6
FAN22G1261 Fragaria x ananassa HOM05D001529 ORTHO05D003309 1.1e-15 85.9 56 75.0
TPR.G32383 Trifolium pratense HOM05D001529 ORTHO05D003309 1.1e-15 85.9 49 83.7
Atru.chr11.1993 Acer truncatum HOM05D001529 ORTHO05D003309 1.4e-15 85.5 53 79.2
MD13G1089000 Malus domestica HOM05D001529 ORTHO05D003309 1.9e-15 85.1 56 75.0
Ciclev10030825m.g Citrus clementina HOM05D001529 ORTHO05D003309 2.4e-15 84.7 56 75.0
Duzib268G0961 Durio zibethinus HOM05D001529 ORTHO05D003309 4.1e-15 84.0 56 78.6
MD16G1089100 Malus domestica HOM05D001529 ORTHO05D003309 4.1e-15 84.0 56 75.0
CAN.G195.27 Capsicum annuum HOM05D001529 ORTHO05D003309 5.4e-15 83.6 56 75.0
Cc11_g14420 Coffea canephora HOM05D001529 ORTHO05D003309 5.4e-15 83.6 56 76.8
Sabra08G0110600 Salix brachista HOM05D001529 ORTHO05D003309 5.4e-15 83.6 56 78.6
HPP92_003784 Vanilla planifolia HOM05D001529 ORTHO05D003309 7.0e-15 83.2 56 73.2
ATR1149G120 Amborella trichopoda HOM05D001529 ORTHO05D003309 9.2e-15 82.8 56 75.0
Potri.008G145600 Populus trichocarpa HOM05D001529 ORTHO05D003309 9.2e-15 82.8 56 78.6
Prupe.8G070800 Prunus persica HOM05D001529 ORTHO05D003309 1.6e-14 82.0 56 71.4
Sopen08g023160 Solanum pennellii HOM05D001529 ORTHO05D003309 1.6e-14 82.0 56 73.2
CAN.G205.14 Capsicum annuum HOM05D001529 ORTHO05D003309 2.0e-14 81.6 56 71.4
Solyc05g005800.4 Solanum lycopersicum HOM05D001529 ORTHO05D003309 2.0e-14 81.6 56 71.4
PGSC0003DMG400046771 Solanum tuberosum HOM05D001529 ORTHO05D003309 2.7e-14 81.3 56 73.2
Nitab4.5_0000059g0050 Nicotiana tabacum HOM05D001529 ORTHO05D003309 3.5e-14 80.9 56 71.4
Sopen05g001810 Solanum pennellii HOM05D001529 ORTHO05D003309 3.5e-14 80.9 56 71.4
Prupe.8G074400 Prunus persica HOM05D001529 ORTHO05D003309 4.6e-14 80.5 56 69.6
CSS0022154 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D003309 6.0e-14 80.1 56 73.2
Nitab4.5_0000052g0290 Nicotiana tabacum HOM05D001529 ORTHO05D003309 6.0e-14 80.1 56 71.4
Rhsim12G0048100 Rhododendron simsii HOM05D001529 ORTHO05D003309 7.8e-14 79.7 56 75.0
SalBow4G1852 Salvia bowleyana HOM05D001529 ORTHO05D003309 7.8e-14 79.7 56 73.2
Sc21g0002330 Simmondsia chinensis HOM05D001529 ORTHO05D003309 7.8e-14 79.7 56 71.4
COL.COLO4_19527 Corchorus olitorius HOM05D001529 ORTHO05D003309 1.0e-13 79.3 56 73.2
Duzib248G1216 Durio zibethinus HOM05D001529 ORTHO05D003309 1.0e-13 79.3 56 73.2
Nitab4.5_0002198g0010 Nicotiana tabacum HOM05D001529 ORTHO05D003309 1.3e-13 79.0 56 71.4
Solyc08g074550.3 Solanum lycopersicum HOM05D001529 ORTHO05D003309 1.3e-13 79.0 56 71.4
ECA246G3900 Erigeron canadensis HOM05D000402 ORTHO05D000263 1.7e-13 78.6 56 71.4
PSO063G6003 Papaver somniferum HOM05D001529 ORTHO05D003309 1.7e-13 78.6 56 71.4
SHI34429 Sapria himalayana HOM05D001529 ORTHO05D003309 1.7e-13 78.6 50 74.0
EL10Ac9g22967 Beta vulgaris HOM05D001529 ORTHO05D003309 2.3e-13 78.2 56 67.9
Ah.01g012480 Amaranthus hybridus HOM05D001529 ORTHO05D003309 3.0e-13 77.8 56 69.6
MSTRG.8760 Avicennia marina HOM05D001529 ORTHO05D003309 3.0e-13 77.8 56 67.9
CAN.G337.76 Capsicum annuum HOM05D001529 ORTHO05D003309 3.0e-13 77.8 56 69.6
BcaB04g19710 Brassica carinata HOM05D001529 ORTHO05D003309 3.9e-13 77.4 56 71.4
A09p05640 Brassica napus HOM05D001529 ORTHO05D003309 3.9e-13 77.4 56 71.4
BraA09t36206Z Brassica rapa HOM05D001529 ORTHO05D003309 3.9e-13 77.4 56 71.4
Gohir.A12G053900 Gossypium hirsutum HOM05D001529 ORTHO05D003309 5.0e-13 77.0 56 69.6
Peaxi162Scf00445g01023 Petunia axillaris HOM05D001529 ORTHO05D003309 5.0e-13 77.0 56 69.6
BolC3t15794H Brassica oleracea HOM05D001529 ORTHO05D012725 6.6e-13 76.6 56 69.6
BolC7t46472H Brassica oleracea HOM05D001529 ORTHO05D012725 6.6e-13 76.6 56 69.6
Peaxi162Scf00064g00054 Petunia axillaris HOM05D001529 ORTHO05D003309 6.6e-13 76.6 56 69.6
AL6G38710 Arabidopsis lyrata HOM05D001529 ORTHO05D003309 8.6e-13 76.3 54 72.2
AT5G26830 Arabidopsis thaliana HOM05D001529 ORTHO05D003309 8.6e-13 76.3 54 74.1
arahy.Tifrunner.gnm1.ann1.WGVK9W Arachis hypogaea HOM05D001529 ORTHO05D003309 8.6e-13 76.3 56 69.6
BcaB04g19712 Brassica carinata HOM05D001529 ORTHO05D003309 8.6e-13 76.3 56 69.6
C09p06250 Brassica napus HOM05D001529 ORTHO05D003309 8.6e-13 76.3 56 69.6
BolC9t53545H Brassica oleracea HOM05D001529 ORTHO05D003309 8.6e-13 76.3 56 69.6
Carub.0006s2450 Capsella rubella HOM05D001529 ORTHO05D003309 1.1e-12 75.9 54 72.2
AUR62017716 Chenopodium quinoa HOM05D001529 ORTHO05D003309 1.1e-12 75.9 56 66.1
Oeu062773.1 Olea europaea HOM05D001529 ORTHO05D003309 1.1e-12 75.9 74 59.5
SEGI_40352 Sequoiadendron giganteum HOM05D001529 ORTHO05D003309 1.1e-12 75.9 56 67.9
Thhalv10003725m.g Eutrema salsugineum HOM05D001529 ORTHO05D003309 1.5e-12 75.5 56 69.6
Gohir.D12G050400 Gossypium hirsutum HOM05D001529 ORTHO05D003309 1.5e-12 75.5 56 67.9
Gorai.008G053600 Gossypium raimondii HOM05D001529 ORTHO05D003309 1.5e-12 75.5 56 67.9
PSO782G3052 Papaver somniferum HOM05D001529 ORTHO05D003309 1.5e-12 75.5 56 67.9
Sp2g21160 Schrenkiella parvula HOM05D001529 ORTHO05D003309 1.5e-12 75.5 56 69.6
Actinidia15026 Actinidia chinensis HOM05D001529 ORTHO05D012725 2.5e-12 74.7 54 66.7
Aa31LG7G7800 Aethionema arabicum HOM05D001529 ORTHO05D003309 2.5e-12 74.7 56 69.6
Nitab4.5_0000328g0020 Nicotiana tabacum HOM05D001529 ORTHO05D003309 2.5e-12 74.7 56 69.6
arahy.Tifrunner.gnm1.ann1.77WG3J Arachis hypogaea HOM05D001529 ORTHO05D003309 3.3e-12 74.3 50 72.0
BcaNung03670 Brassica carinata HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
BcaNung03917 Brassica carinata HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
A06p37060 Brassica napus HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
C07p41380 Brassica napus HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
BolC7t44668H Brassica oleracea HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
BraA06t26631Z Brassica rapa HOM05D001529 ORTHO05D003309 3.3e-12 74.3 56 67.9
SGA_v2.0_scaffold43G16337 Striga asiatica HOM05D001529 ORTHO05D003309 4.3e-12 73.9 56 67.9
CARHR186700 Cardamine hirsuta HOM05D001529 ORTHO05D003309 5.6e-12 73.6 54 70.4
Nitab4.5_0002287g0040 Nicotiana tabacum HOM05D001529 ORTHO05D003309 5.6e-12 73.6 56 67.9
Os08g0295300 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D003309 5.6e-12 73.6 54 64.8
Oeu004131.1 Olea europaea HOM05D001529 ORTHO05D003309 7.3e-12 73.2 56 67.9
AUR62032963 Chenopodium quinoa HOM05D001529 ORTHO05D003309 9.5e-12 72.8 56 64.3
Eucgr.I00127 Eucalyptus grandis HOM05D001529 ORTHO05D003309 1.2e-11 72.4 56 67.9
Hund08612 Selenicereus undatus HOM05D001529 ORTHO05D003309 1.2e-11 72.4 50 68.0
unitig_0.g2778 Utricularia gibba HOM05D001529 ORTHO05D003309 1.2e-11 72.4 56 66.1
vmacro01191 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 1.2e-11 72.4 59 69.5
vmacro12521 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 1.2e-11 72.4 59 69.5
vmacro22610 Vaccinium macrocarpon HOM05D001529 ORTHO05D003309 1.2e-11 72.4 59 69.5
CSS0025151 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D003309 2.8e-11 71.2 56 67.9
arahy.Tifrunner.gnm1.ann1.GD50BS Arachis hypogaea HOM05D001529 ORTHO05D003309 3.6e-11 70.9 45 80.0
Migut.F00372 Erythranthe guttata HOM05D001529 ORTHO05D003309 3.6e-11 70.9 54 63.0
Cfa020353 Carpinus fangiana HOM05D001529 ORTHO05D003309 2.3e-10 68.2 62 62.9
DCAR_007098 Daucus carota HOM05D001529 ORTHO05D003309 2.3e-10 68.2 56 64.3
FvH4_6g47820 Fragaria vesca HOM05D001529 ORTHO05D003309 3.1e-10 67.8 58 58.6
FAN09G2777 Fragaria x ananassa HOM05D001529 ORTHO05D012725 3.1e-10 67.8 58 58.6
arahy.Tifrunner.gnm1.ann1.N1MFUI Arachis hypogaea HOM05D001529 ORTHO05D003309 8.9e-10 66.2 68 57.4
FvH4_3g11970 Fragaria vesca HOM05D001529 ORTHO05D003309 1.2e-09 65.9 51 68.6
SGA_v2.0_scaffold232G43521 Striga asiatica HOM05D001529 ORTHO05D003309 1.2e-09 65.9 56 60.7
Zm00001eb045520 Zea mays HOM05D001529 ORTHO05D003309 1.5e-09 65.5 54 55.6
Zm00001eb217950 Zea mays HOM05D001529 ORTHO05D003309 9.8e-09 62.8 54 53.7
CBR_g9037 Chara braunii HOM05D001529 ORTHO05D003309 2.9e-08 61.2 56 51.8
BcaC07g41339 Brassica carinata HOM05D001529 ORTHO05D003309 1.9e-07 58.5 56 57.1
A09p60040 Brassica napus HOM05D001529 ORTHO05D003309 1.9e-07 58.5 56 57.1
BolC8t51996H Brassica oleracea HOM05D001529 ORTHO05D003309 1.9e-07 58.5 56 57.1
BraA09t41374Z Brassica rapa HOM05D001529 ORTHO05D003309 1.9e-07 58.5 56 57.1
AagrBONN_evm.TU.Sc2ySwM_344.173 Anthoceros agrestis HOM05D001529 ORTHO05D003309 2.4e-07 58.2 56 55.4
Pp3c20_19020 Physcomitrium patens HOM05D001529 ORTHO05D003309 2.4e-07 58.2 56 50.0
Mapoly0065s0074 Marchantia polymorpha HOM05D001529 ORTHO05D003309 4.1e-07 57.4 56 55.4
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 5.4e-07 57.0 56 55.4
Carub.0001s1958 Capsella rubella HOM05D001529 ORTHO05D003309 1.6e-06 55.5 50 60.0
AL1G30500 Arabidopsis lyrata HOM05D001529 ORTHO05D003309 2.1e-06 55.1 54 55.6
Carub.0001s1766 Capsella rubella HOM05D001529 ORTHO05D003309 2.1e-06 55.1 54 57.4
Ca_20337_v3 Cicer arietinum L. HOM05D000814 ORTHO05D012725 2.7e-06 54.7 41 68.3
AL1G30740 Arabidopsis lyrata HOM05D001529 ORTHO05D012725 3.5e-06 54.3 50 64.0
PSO782G1912 Papaver somniferum HOM05D001529 ORTHO05D003309 3.5e-06 54.3 59 55.9
AT1G18130 Arabidopsis thaliana HOM05D001529 ORTHO05D012725 4.6e-06 53.9 54 55.6
Ca_22314_v3 Cicer arietinum L. HOM05D000814 ORTHO05D012725 6.0e-06 53.5 41 68.3
Aa31LG7G2950 Aethionema arabicum HOM05D001529 ORTHO05D003309 7.8e-06 53.1 74 48.6


User provided reference genes

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