Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 2.4e-229 798.5 413 100.0
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 7.1e-213 743.8 399 93.7
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 1.8e-208 729.2 399 91.7
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 2.1e-204 715.7 383 94.0
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 2.3e-195 685.6 399 86.7
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 1.9e-189 666.0 399 84.0
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 4.2e-189 664.8 397 84.4
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 3.5e-188 661.8 399 82.2
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 6.0e-188 661.0 396 84.8
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 2.3e-187 659.1 399 82.0
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 6.5e-174 614.4 498 66.7
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 1.1e-157 560.5 400 70.0
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 3.2e-157 558.9 400 70.5
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 9.4e-157 557.4 403 69.7
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.6e-156 556.6 398 68.3
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 7.9e-156 554.3 403 69.7
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 1.4e-155 553.5 400 69.8
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.8e-155 553.1 398 69.8
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 3.0e-155 552.4 399 70.4
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 1.5e-154 550.1 402 70.4
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 3.7e-153 545.4 401 69.6
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 3.7e-153 545.4 399 68.7
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 1.4e-152 543.5 387 70.8
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 7.2e-149 531.2 400 68.2
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 8.0e-148 527.7 400 67.5
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 1.0e-147 527.3 399 66.7
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.4e-147 526.9 378 69.3
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.8e-147 526.6 397 65.2
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 2.0e-146 523.1 381 68.8
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 4.4e-146 521.9 399 66.2
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 7.5e-146 521.2 399 67.4
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.2e-145 519.6 399 65.9
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 2.2e-145 519.6 393 67.4
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 5.3e-144 515.0 399 67.2
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 3.5e-143 512.3 398 65.1
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 5.5e-141 505.0 397 65.2
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 5.5e-141 505.0 397 65.2
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 5.5e-141 505.0 400 64.2
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 1.6e-140 503.4 402 64.7
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 3.6e-140 502.3 413 63.0
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 6.1e-140 501.5 397 65.0
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 8.0e-140 501.1 394 65.2
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 4.8e-137 491.9 413 61.3
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 1.1e-136 490.7 397 61.7
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 1.1e-136 490.7 403 63.0
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 1.1e-136 490.7 397 61.7
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 3.1e-136 489.2 397 61.5
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 7.0e-136 488.0 396 60.4
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 1.2e-135 487.3 400 62.5
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 2.0e-135 486.5 402 61.2
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.0e-135 486.5 402 61.9
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 2.7e-135 486.1 396 60.9
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 3.5e-135 485.7 390 64.1
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 7.7e-135 484.6 396 60.4
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 1.3e-134 483.8 380 64.7
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.3e-134 483.8 402 61.7
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 1.7e-134 483.4 417 59.0
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 1.7e-134 483.4 361 67.9
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 6.5e-134 481.5 400 61.2
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 2.5e-133 479.6 397 61.0
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.2e-133 479.2 384 63.0
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 7.2e-133 478.0 397 60.5
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 9.4e-133 477.6 400 60.2
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 2.7e-132 476.1 397 59.9
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 2.7e-132 476.1 443 58.5
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 8.0e-132 474.6 384 62.5
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 1.0e-131 474.2 316 73.7
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 1.8e-131 473.4 400 61.5
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 2.3e-131 473.0 397 59.9
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.5e-130 470.3 337 69.4
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 3.4e-130 469.2 386 60.6
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 4.4e-130 468.8 400 60.0
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 4.4e-130 468.8 402 61.9
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 4.4e-130 468.8 402 61.4
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 1.3e-129 467.2 400 60.8
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 6.3e-129 464.9 398 60.3
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 1.8e-128 463.4 434 56.2
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 9.2e-128 461.1 395 59.2
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 1.6e-127 460.3 393 59.3
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.5e-125 453.0 418 56.0
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 5.6e-125 451.8 407 60.0
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 7.3e-125 451.4 395 58.5
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 9.5e-125 451.1 399 57.9
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 7.5e-122 441.4 380 59.7
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 2.9e-121 439.5 386 58.0
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 3.7e-121 439.1 369 60.2
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 4.9e-121 438.7 362 61.6
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 7.8e-119 431.4 349 65.0
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 5.6e-117 425.2 370 57.3
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.2e-114 417.5 430 52.8
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 3.4e-114 416.0 368 57.3
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 2.9e-113 412.9 398 55.0
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 5.2e-107 392.1 398 52.3
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 4.4e-106 389.0 371 56.1
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 3.7e-105 386.0 234 82.5
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 1.2e-103 380.9 352 54.8
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 1.2e-103 380.9 352 54.8
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 1.5e-101 374.0 399 52.6
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 7.3e-101 371.7 250 73.2
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 6.4e-97 358.6 418 46.9
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 4.6e-95 352.4 399 48.1
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.5e-93 347.4 349 53.3
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.3e-86 324.3 224 70.5
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.6e-84 317.4 258 60.9
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 4.9e-81 305.8 347 47.3
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 5.6e-77 292.4 376 47.3
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 9.6e-77 291.6 222 66.2
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 6.9e-75 285.4 438 38.6
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 1.5e-69 267.7 427 40.5
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 3.9e-62 243.0 324 43.5
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 6.3e-60 235.7 274 51.1
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 1.0e-54 218.4 267 45.3
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 9.7e-53 211.8 232 52.2
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 2.7e-47 193.7 160 61.2
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 2.7e-47 193.7 160 61.2
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 3.0e-46 190.3 173 54.3
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 2.2e-44 184.1 178 55.6
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 4.1e-43 179.9 164 57.9
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.2e-41 174.1 160 58.8
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 3.9e-38 163.3 408 29.9
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 3.1e-35 153.7 139 57.6
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 1.5e-32 144.8 102 69.6
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 4.2e-32 143.3 146 49.3
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 7.2e-32 142.5 94 72.3
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.0e-30 138.7 116 58.6
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 8.8e-22 109.0 239 32.2
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 5.9e-18 96.3 67 65.7
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.0e-09 66.6 52 65.4
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-09 66.2 39 74.4
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 8.6e-09 65.9 52 65.4
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.1e-08 65.5 90 42.2


User provided reference genes

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