Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8264 Trifolium pratense HOM05D002263 ORTHO05D412123 1.3e-140 503.1 250 100.0
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 7.2e-11 72.0 60 55.0
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-10 71.2 60 56.7
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.2e-10 71.2 60 56.7
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.8e-10 70.1 60 55.0
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 2.8e-10 70.1 60 55.0
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 4.7e-10 69.3 60 51.7
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 6.1e-10 68.9 60 50.0
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 53.3
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 53.3
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 55.0
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 51.7
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 53.3
QL04p008683 Quercus lobata HOM05D002263 ORTHO05D003537 1.0e-09 68.2 60 53.3
RcHm_v2.0_Chr1g0375001 Rosa chinensis HOM05D002263 ORTHO05D003537 1.0e-09 68.2 73 49.3
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.4e-09 67.8 60 53.3
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 1.4e-09 67.8 60 46.7
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.8e-09 67.4 60 53.3
Oeu049004.1 Olea europaea HOM05D002263 ORTHO05D003537 1.8e-09 67.4 60 53.3
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 2.3e-09 67.0 60 53.3
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 2.3e-09 67.0 60 53.3
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 2.3e-09 67.0 60 53.3
Actinidia19405 Actinidia chinensis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
QL04p008589 Quercus lobata HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 3.0e-09 66.6 60 51.7
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 51.7
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 48.3
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 4.0e-09 66.2 60 50.0
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 46.7
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 51.7
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 51.7
Hma1.2p1_0326F.1_g126210 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 50.0
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 50.0
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 5.2e-09 65.9 73 47.9
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 50.0
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 50.0
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 5.2e-09 65.9 60 51.7
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 48.3
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 50.0
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 48.3
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 50.0
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 51.7
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 51.7
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 6.8e-09 65.5 60 51.7
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 46.7
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 51.7
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
Hma1.2p1_2160F.1_g315580 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 51.7
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 8.8e-09 65.1 60 50.0
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 50.0
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 50.0
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 50.0
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 48.3
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 48.3
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 50.0
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 48.3
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 48.3
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 50.0
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.2e-08 64.7 60 48.3
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 45.0
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 45.0
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 51.7
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 1.5e-08 64.3 73 46.6
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 50.0
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 46.7
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 48.3
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 46.7
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 1.5e-08 64.3 60 50.0
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.0e-08 63.9 60 50.0
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.0e-08 63.9 60 43.3
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 2.0e-08 63.9 60 46.7
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 2.0e-08 63.9 60 43.3
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 2.0e-08 63.9 60 50.0
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 2.6e-08 63.5 60 43.3
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 2.6e-08 63.5 60 48.3
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 3.4e-08 63.2 60 48.3
COL.COLO4_15049 Corchorus olitorius HOM05D002263 ORTHO05D003537 3.4e-08 63.2 60 48.3
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 4.4e-08 62.8 60 45.0
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 4.4e-08 62.8 60 46.7
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 7.5e-08 62.0 60 43.3
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 7.5e-08 62.0 60 50.0
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 7.5e-08 62.0 60 48.3
Actinidia09172 Actinidia chinensis HOM05D002263 ORTHO05D003537 9.8e-08 61.6 60 46.7
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 9.8e-08 61.6 60 48.3
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 9.8e-08 61.6 60 48.3
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 9.8e-08 61.6 60 48.3
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 9.8e-08 61.6 60 48.3
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 1.7e-07 60.8 61 47.5
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 2.8e-07 60.1 60 45.0
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 2.8e-07 60.1 61 42.6
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 3.7e-07 59.7 60 43.3
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 3.7e-07 59.7 60 45.0
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 4.9e-07 59.3 60 48.3
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 6.3e-07 58.9 60 46.7
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 1.1e-06 58.2 59 42.4
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 1.4e-06 57.8 60 40.0
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 1.8e-06 57.4 60 46.7
TAR369G0234 Trochodendron aralioides HOM05D002005 ORTHO05D003757 1.8e-06 57.4 63 46.0
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 7.0e-06 55.5 60 48.3
Sed0023112 Sechium edule HOM05D002263 ORTHO05D003537 7.0e-06 55.5 60 41.7
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 7.0e-06 55.5 61 45.9


User provided reference genes

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