Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 4.7e-142 508.1 298 100.0
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 3.5e-105 385.6 346 64.2
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 1.9e-90 336.7 343 57.4
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.2e-84 317.4 397 51.1
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 3.0e-80 302.8 350 54.6
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.7e-75 287.0 282 58.9
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 4.2e-66 255.8 275 52.4
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.0e-64 251.1 336 48.8
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 2.3e-64 250.0 278 52.5
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 5.2e-64 248.8 336 46.7
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 2.2e-62 243.4 286 51.7
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.2e-60 237.7 283 50.9
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 1.3e-59 234.2 285 49.1
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 5.0e-59 232.3 287 49.1
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 8.5e-59 231.5 283 48.4
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 8.0e-57 224.9 280 47.1
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 2.3e-56 223.4 278 47.5
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 3.0e-56 223.0 323 44.0
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 4.0e-56 222.6 282 47.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 4.0e-56 222.6 284 47.5
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 2.0e-55 220.3 281 48.4
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 4.4e-55 219.2 280 46.1
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 1.7e-54 217.2 282 47.2
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 2.2e-54 216.9 282 46.8
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 2.2e-54 216.9 284 46.8
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 4.8e-54 215.7 285 46.3
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 8.2e-54 214.9 281 47.7
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 1.4e-53 214.2 284 45.4
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 1.4e-53 214.2 281 47.0
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.8e-53 213.8 279 47.7
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 2.4e-53 213.4 277 46.6
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 3.1e-53 213.0 285 46.0
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 4.1e-53 212.6 282 46.5
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 4.1e-53 212.6 297 44.1
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 4.1e-53 212.6 285 46.0
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 5.3e-53 212.2 283 46.3
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 7.0e-53 211.8 346 42.2
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 7.0e-53 211.8 285 46.0
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 9.1e-53 211.5 285 46.7
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.2e-52 211.1 291 45.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 1.6e-52 210.7 282 45.4
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 2.7e-52 209.9 282 45.7
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 4.5e-52 209.1 282 45.4
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 7.7e-52 208.4 281 46.3
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 1.7e-51 207.2 283 44.9
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 1.7e-51 207.2 283 44.2
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.2e-51 206.8 274 47.1
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 3.8e-51 206.1 275 47.3
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 5.0e-51 205.7 273 46.5
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 6.5e-51 205.3 278 44.6
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 6.5e-51 205.3 287 44.9
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.5e-50 204.1 280 45.7
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.5e-50 204.1 278 44.2
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 2.5e-50 203.4 278 43.9
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 9.4e-50 201.4 277 43.7
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 9.4e-50 201.4 284 43.3
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 1.2e-49 201.1 280 43.6
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.2e-49 201.1 281 42.7
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.2e-49 201.1 278 44.6
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 1.2e-49 201.1 280 45.0
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 4.7e-49 199.1 263 47.5
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 6.1e-49 198.7 271 45.8
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 6.1e-49 198.7 286 43.7
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 8.0e-49 198.4 274 44.5
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 8.0e-49 198.4 281 43.8
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.4e-48 197.6 281 44.5
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.8e-48 197.2 278 44.2
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 6.8e-48 195.3 284 41.9
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 1.2e-47 194.5 281 45.9
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 2.0e-47 193.7 281 43.1
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 2.0e-47 193.7 294 42.2
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 1.3e-46 191.0 279 43.0
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 2.8e-46 189.9 281 42.7
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 1.1e-45 188.0 276 40.6
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.0e-44 183.7 290 39.7
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 4.5e-44 182.6 280 40.7
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.7e-43 180.6 284 41.9
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 3.8e-43 179.5 280 40.7
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 3.8e-43 179.5 343 36.7
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 8.5e-43 178.3 279 41.6
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 5.5e-42 175.6 235 48.1
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 6.1e-41 172.2 329 35.9
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 1.8e-40 170.6 260 42.7
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.8e-40 170.6 252 42.5
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 1.2e-39 167.9 278 38.1
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.5e-39 167.5 253 40.3
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.8e-38 163.3 275 39.3
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 2.4e-37 160.2 270 40.7
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.6e-36 157.5 208 47.6
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 1.3e-35 154.5 281 39.5
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 1.8e-29 134.0 273 34.1
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 2.4e-29 133.7 235 37.4
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 4.7e-25 119.4 271 31.7
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.2e-21 106.7 225 35.6
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 1.6e-20 104.4 160 40.6
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.0e-19 101.7 136 48.5
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 1.6e-17 94.4 74 62.2
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 1.5e-15 87.8 262 25.2
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 8.3e-14 82.0 96 53.1
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 4.6e-12 76.3 73 47.9
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.3e-10 69.7 73 45.2
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 3.4e-07 60.1 117 43.6
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-07 58.9 246 21.5
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.8e-06 56.6 52 51.9


User provided reference genes

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