Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G771 Trifolium pratense HOM05D004477 ORTHO05D005615 9.3e-27 122.9 65 100.0
TPR.G3866 Trifolium pratense HOM05D004477 ORTHO05D005615 5.1e-25 117.1 65 96.9
Medtr3g019370 Medicago truncatula HOM05D004477 ORTHO05D005615 1.5e-21 105.5 65 84.6
Prupe.8G084800 Prunus persica HOM05D004477 ORTHO05D005615 1.7e-20 102.1 65 86.2
Lalb_Chr20g0109051 Lupinus albus HOM05D004477 ORTHO05D005615 4.9e-20 100.5 65 83.1
Ca_14282_v3 Cicer arietinum L. HOM05D004477 ORTHO05D005615 6.5e-20 100.1 65 84.6
Glyma.11G152600 Glycine max HOM05D004477 ORTHO05D005615 6.5e-20 100.1 65 84.6
arahy.Tifrunner.gnm1.ann1.5IKX6D Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-19 99.4 65 83.1
arahy.Tifrunner.gnm1.ann1.8LX4B2 Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-19 99.4 65 83.1
arahy.Tifrunner.gnm1.ann1.95EFUZ Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-19 99.4 65 83.1
arahy.Tifrunner.gnm1.ann1.T70L3V Arachis hypogaea HOM05D004477 ORTHO05D005615 1.1e-19 99.4 65 83.1
THA.LOC104800270 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 1.4e-19 99.0 65 83.1
THA.LOC104824184 Tarenaya hassleriana HOM05D004477 ORTHO05D005615 1.4e-19 99.0 65 83.1
VMungo1080G0371 Vigna mungo HOM05D004477 ORTHO05D005615 1.4e-19 99.0 65 83.1
Prupe.8G084000 Prunus persica HOM05D004477 ORTHO05D005615 1.9e-19 98.6 65 83.1
Prupe.I005600 Prunus persica HOM05D004477 ORTHO05D005615 1.9e-19 98.6 65 83.1
Glyma.04G139900 Glycine max HOM05D004477 ORTHO05D005615 3.2e-19 97.8 65 83.1
Oeu049664.1 Olea europaea HOM05D004477 ORTHO05D005615 3.2e-19 97.8 65 81.5
MSTRG.2896 Avicennia marina HOM05D004477 ORTHO05D005615 4.2e-19 97.4 65 81.5
Ciclev10032276m.g Citrus clementina HOM05D004477 ORTHO05D005615 4.2e-19 97.4 65 81.5
Cpa.g.sc51.97 Carica papaya HOM05D004477 ORTHO05D005615 5.5e-19 97.1 64 82.8
Lj3g0011019 Lotus japonicus HOM05D004477 ORTHO05D005615 5.5e-19 97.1 65 83.1
Psat4g000640 Pisum sativum HOM05D004477 ORTHO05D005615 5.5e-19 97.1 65 81.5
Psat5g217400 Pisum sativum HOM05D004477 ORTHO05D005615 5.5e-19 97.1 65 81.5
Atru.chr3.2871 Acer truncatum HOM05D004477 ORTHO05D005615 7.1e-19 96.7 65 81.5
AT1G63780 Arabidopsis thaliana HOM05D004477 ORTHO05D005615 7.1e-19 96.7 65 81.5
Haze_07686 Corylus avellana HOM05D004477 ORTHO05D005615 7.1e-19 96.7 65 80.0
Nitab4.5_0021326g0010 Nicotiana tabacum HOM05D004477 ORTHO05D005615 9.3e-19 96.3 65 80.0
TWI15G0640 Tripterygium wilfordii HOM05D004477 ORTHO05D005615 9.3e-19 96.3 65 81.5
Carub.0002s0106 Capsella rubella HOM05D004477 ORTHO05D005615 1.2e-18 95.9 65 80.0
CARHR047410 Cardamine hirsuta HOM05D004477 ORTHO05D005615 1.2e-18 95.9 65 80.0
Phvul.005G031000 Phaseolus vulgaris HOM05D004477 ORTHO05D005615 1.2e-18 95.9 65 81.5
Aa31LG2G960 Aethionema arabicum HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
BcaC04g22503 Brassica carinata HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
A09p15310 Brassica napus HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
C09p18580 Brassica napus HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
BolC9t54754H Brassica oleracea HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
BraA09t37176Z Brassica rapa HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 80.0
Cfa019574 Carpinus fangiana HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 78.5
CDE05G2398 Ceratophyllum demersum HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 78.5
Haze_09336 Corylus avellana HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 78.5
Nitab4.5_0000624g0090 Nicotiana tabacum HOM05D004477 ORTHO05D005615 1.6e-18 95.5 65 78.5
AL2G11360 Arabidopsis lyrata HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 78.5
BcaB07g31410 Brassica carinata HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
MD05G1030400 Malus domestica HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
MD10G1031800 Malus domestica HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
Potri.001G024500 Populus trichocarpa HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
Potri.003G201100 Populus trichocarpa HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
Sabra03G0148700 Salix brachista HOM05D004477 ORTHO05D005615 2.1e-18 95.1 65 80.0
CSS0003663 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.7e-18 94.7 65 78.5
CSS0028927 Camellia sinensis var. sinensis HOM05D004477 ORTHO05D005615 2.7e-18 94.7 65 78.5
QL04p014055 Quercus lobata HOM05D004477 ORTHO05D005615 2.7e-18 94.7 65 76.9
Sp2g00900 Schrenkiella parvula HOM05D004477 ORTHO05D005615 2.7e-18 94.7 65 80.0
Dinv32044 Davidia involucrata HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 78.5
Thhalv10023618m.g Eutrema salsugineum HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 78.5
Prupe.2G030400 Prunus persica HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 80.0
SalBow7G4685 Salvia bowleyana HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 78.5
vmacro13733 Vaccinium macrocarpon HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 76.9
HPP92_017907 Vanilla planifolia HOM05D004477 ORTHO05D005615 3.5e-18 94.4 65 78.5
Cfa019303 Carpinus fangiana HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 76.9
ECA233G2007 Erigeron canadensis HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 75.4
Nn7g36505 Nelumbo nucifera HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 78.5
Psat4g015320 Pisum sativum HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 78.5
SMO118G0432 Selaginella moellendorffii HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 76.9
Solyc01g007250.4 Solanum lycopersicum HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 80.0
Solyc11g065960.3 Solanum lycopersicum HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 80.0
Sopen01g003240 Solanum pennellii HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 80.0
PGSC0003DMG400000394 Solanum tuberosum HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 80.0
PGSC0003DMG400016389 Solanum tuberosum HOM05D004477 ORTHO05D005615 4.6e-18 94.0 65 80.0
COL.COLO4_25826 Corchorus olitorius HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 76.9
FAN03G1284 Fragaria x ananassa HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 78.5
FAN10G1920 Fragaria x ananassa HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 78.5
Mapoly0031s0129 Marchantia polymorpha HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 78.5
Hund13333 Selenicereus undatus HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 76.9
Thecc.10G006900 Theobroma cacao HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 78.5
GSVIVG01000834001 Vitis vinifera HOM05D004477 ORTHO05D005615 7.9e-18 93.2 65 76.9
Actinidia06268 Actinidia chinensis HOM05D004477 ORTHO05D005615 1.0e-17 92.8 65 75.4
Eucgr.G03251 Eucalyptus grandis HOM05D004477 ORTHO05D005615 1.0e-17 92.8 65 75.4
EL10Ac2g02848 Beta vulgaris HOM05D004477 ORTHO05D005615 1.3e-17 92.4 65 76.9
CiPaw.11G047300 Carya illinoinensis HOM05D004477 ORTHO05D005615 1.3e-17 92.4 64 78.1
FvH4_7g02470 Fragaria vesca HOM05D004477 ORTHO05D005615 1.3e-17 92.4 65 78.5
FAN06G1855 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.3e-17 92.4 65 78.5
Sc10g0004300 Simmondsia chinensis HOM05D004477 ORTHO05D005615 1.3e-17 92.4 65 75.4
CAN.G574.29 Capsicum annuum HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 75.4
AUR62026831 Chenopodium quinoa HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 76.9
AUR62037222 Chenopodium quinoa HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 76.9
HanXRQChr15g0469031 Helianthus annuus HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 75.4
Lsat_1_v5_gn_5_69441 Lactuca sativa HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 75.4
Pp3c25_4340 Physcomitrium patens HOM05D004477 ORTHO05D005615 1.8e-17 92.0 64 78.1
Pp3c25_4350 Physcomitrium patens HOM05D004477 ORTHO05D005615 1.8e-17 92.0 64 78.1
Pp3c25_4370 Physcomitrium patens HOM05D004477 ORTHO05D005615 1.8e-17 92.0 64 78.1
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.8e-17 92.0 65 78.5
Manes.11G003480 Manihot esculenta HOM05D004477 ORTHO05D005615 2.3e-17 91.7 65 78.5
TAR623G1431 Trochodendron aralioides HOM05D004477 ORTHO05D005615 2.3e-17 91.7 65 75.4
MELO3C005127.2 Cucumis melo HOM05D004477 ORTHO05D005615 3.0e-17 91.3 65 76.9
CsaV3_5G024730 Cucumis sativus L. HOM05D004477 ORTHO05D005615 3.0e-17 91.3 65 76.9
Sed0015395 Sechium edule HOM05D004477 ORTHO05D005615 3.0e-17 91.3 65 75.4
Migut.H00453 Erythranthe guttata HOM05D004477 ORTHO05D005615 3.9e-17 90.9 65 73.8
RcHm_v2.0_Chr1g0321121 Rosa chinensis HOM05D004477 ORTHO05D005615 3.9e-17 90.9 65 76.9
Prupe.2G030500 Prunus persica HOM05D004477 ORTHO05D005615 5.1e-17 90.5 65 72.3
Cc06_g06430 Coffea canephora HOM05D004477 ORTHO05D005615 6.7e-17 90.1 65 73.8
Gohir.A06G159200 Gossypium hirsutum HOM05D004477 ORTHO05D005615 6.7e-17 90.1 65 75.4
Gohir.D12G108500 Gossypium hirsutum HOM05D004477 ORTHO05D005615 6.7e-17 90.1 65 75.4
Gorai.010G192500 Gossypium raimondii HOM05D004477 ORTHO05D005615 6.7e-17 90.1 65 75.4
ClCG01G007690 Citrullus lanatus HOM05D004477 ORTHO05D005615 8.7e-17 89.7 65 75.4
Duzib128G1167 Durio zibethinus HOM05D004477 ORTHO05D005615 8.7e-17 89.7 65 75.4
PSO017G0587 Papaver somniferum HOM05D004477 ORTHO05D005615 8.7e-17 89.7 64 73.4
Cre10.g454100 Chlamydomonas reinhardtii HOM05D004477 ORTHO05D005615 1.1e-16 89.4 65 73.8
DCAR_030970 Daucus carota HOM05D004477 ORTHO05D005615 1.1e-16 89.4 65 75.4
Aqoxy7G00557 Aquilegia oxysepala HOM05D004477 ORTHO05D005615 1.5e-16 89.0 64 75.0
Gohir.D06G165100 Gossypium hirsutum HOM05D004477 ORTHO05D005615 1.5e-16 89.0 65 75.4
PSO478G1616 Papaver somniferum HOM05D004477 ORTHO05D005615 1.9e-16 88.6 64 73.4
Ah.03g137500 Amaranthus hybridus HOM05D004477 ORTHO05D005615 9.6e-16 86.3 65 73.8
ATR0307G081 Amborella trichopoda HOM05D004477 ORTHO05D005615 9.6e-16 86.3 65 72.3
PGR031G2712 Punica granatum HOM05D004477 ORTHO05D005615 1.6e-15 85.5 65 70.8
CBR_g37218 Chara braunii HOM05D004477 ORTHO05D005615 2.1e-15 85.1 63 73.0
TAR633G1412 Trochodendron aralioides HOM05D004477 ORTHO05D005615 2.1e-15 85.1 71 69.0
BcaB07g31550 Brassica carinata HOM05D004477 ORTHO05D005615 2.8e-15 84.7 65 72.3
CANSAT80G2023 Cannabis sativa HOM05D004477 ORTHO05D005615 1.8e-14 82.0 65 69.2
Sed0014614 Sechium edule HOM05D004477 ORTHO05D005615 3.1e-14 81.3 64 68.8
PRCOL_00000378 Prasinoderma coloniale HOM05D004477 ORTHO05D005615 4.1e-14 80.9 64 68.8
MCO12G196 Micromonas commoda HOM05D004477 ORTHO05D005615 6.9e-14 80.1 65 66.2
FvH4_7g04360 Fragaria vesca HOM05D004477 ORTHO05D005615 1.2e-13 79.3 65 66.2
Gorai.008G117500 Gossypium raimondii HOM05D004477 ORTHO05D005615 1.3e-12 75.9 51 78.4
Zm00001eb226560 Zea mays HOM05D004477 ORTHO05D005615 1.7e-12 75.5 62 66.1
Prupe.4G022800 Prunus persica HOM05D004477 ORTHO05D005615 5.0e-12 73.9 62 71.0
FAN10G2896 Fragaria x ananassa HOM05D004477 ORTHO05D005615 1.1e-11 72.8 65 60.0
Sopen11g025700 Solanum pennellii HOM05D004477 ORTHO05D005615 5.5e-11 70.5 65 64.6
Rhsim07G0063100 Rhododendron simsii HOM05D004477 ORTHO05D005615 7.2e-11 70.1 65 63.1
SGA_v2.0_scaffold289G47250 Striga asiatica HOM05D004477 ORTHO05D005615 1.6e-10 68.9 70 60.0
Os08g0155000 Oryza sativa ssp. japonica HOM05D004477 ORTHO05D005615 1.8e-06 55.5 53 60.4
SalBow5G3206 Salvia bowleyana HOM05D031228 ORTHO05D030301 1.8e-06 55.5 87 48.3


User provided reference genes

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