Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G759 Trifolium pratense HOM05D000454 ORTHO05D002637 1.2e-47 193.0 111 100.0
arahy.Tifrunner.gnm1.ann1.VK618R Arachis hypogaea HOM05D000454 ORTHO05D002637 1.9e-24 115.9 61 88.5
Lj3g0015079 Lotus japonicus HOM05D000454 ORTHO05D002637 1.9e-24 115.9 61 93.4
Medtr2g101320 Medicago truncatula HOM05D000454 ORTHO05D002637 1.9e-24 115.9 61 93.4
arahy.Tifrunner.gnm1.ann1.2M4JN6 Arachis hypogaea HOM05D000454 ORTHO05D002637 5.6e-24 114.4 61 86.9
Medtr2g101310 Medicago truncatula HOM05D000454 ORTHO05D002637 1.3e-23 113.2 61 90.2
Glyma.15G018600 Glycine max HOM05D000454 ORTHO05D002637 1.4e-22 109.8 60 86.7
arahy.Tifrunner.gnm1.ann1.3J38IA Arachis hypogaea HOM05D000454 ORTHO05D002637 2.4e-22 109.0 61 80.3
arahy.Tifrunner.gnm1.ann1.CL84N0 Arachis hypogaea HOM05D000454 ORTHO05D002637 5.3e-22 107.8 60 83.3
Phvul.005G167300 Phaseolus vulgaris HOM05D000454 ORTHO05D002637 2.9e-20 102.1 60 81.7
Haze_07930 Corylus avellana HOM05D000454 ORTHO05D002637 2.5e-19 99.0 61 75.4
FAN09G2279 Fragaria x ananassa HOM05D000454 ORTHO05D002637 3.2e-19 98.6 61 75.4
QL05p020655 Quercus lobata HOM05D000454 ORTHO05D002637 3.2e-19 98.6 95 51.6
Cfa012703 Carpinus fangiana HOM05D000454 ORTHO05D002637 4.2e-19 98.2 61 75.4
QL05p020689 Quercus lobata HOM05D000454 ORTHO05D002637 7.1e-19 97.4 89 55.1
MD17G1186800 Malus domestica HOM05D000454 ORTHO05D002637 2.1e-18 95.9 61 72.1
RcHm_v2.0_Chr2g0139911 Rosa chinensis HOM05D000454 ORTHO05D002637 2.1e-18 95.9 61 73.8
CiPaw.01G233200 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.7e-18 95.5 60 71.7
FvH4_6g32121 Fragaria vesca HOM05D000454 ORTHO05D002637 4.6e-18 94.7 61 70.5
FAN14G0896 Fragaria x ananassa HOM05D000454 ORTHO05D002637 4.6e-18 94.7 61 70.5
Prupe.3G061900 Prunus persica HOM05D000454 ORTHO05D002637 4.6e-18 94.7 61 72.1
CiPaw.01G233300 Carya illinoinensis HOM05D000454 ORTHO05D002637 1.0e-17 93.6 61 70.5
QL05p020771 Quercus lobata HOM05D000454 ORTHO05D002637 1.0e-17 93.6 89 52.8
QL05p020802 Quercus lobata HOM05D000454 ORTHO05D002637 1.0e-17 93.6 89 55.1
Prupe.3G062400 Prunus persica HOM05D000454 ORTHO05D002637 3.9e-17 91.7 61 67.2
VMungo1080G0542 Vigna mungo HOM05D000454 ORTHO05D002637 5.1e-17 91.3 50 88.0
Prupe.3G062300 Prunus persica HOM05D000454 ORTHO05D002637 6.7e-17 90.9 80 60.0
FvH4_6g32091 Fragaria vesca HOM05D000454 ORTHO05D002637 1.9e-16 89.4 85 58.8
FAN14G5147 Fragaria x ananassa HOM05D000454 ORTHO05D002637 1.9e-16 89.4 85 58.8
Prupe.3G065300 Prunus persica HOM05D000454 ORTHO05D002637 1.9e-16 89.4 80 60.0
QL05p020666 Quercus lobata HOM05D000454 ORTHO05D002637 2.5e-16 89.0 76 52.6
CANSAT56G0237 Cannabis sativa HOM05D000454 ORTHO05D002637 3.3e-16 88.6 61 70.5
TAR383G0435 Trochodendron aralioides HOM05D000454 ORTHO05D002637 3.3e-16 88.6 60 61.7
QL05p020680 Quercus lobata HOM05D000454 ORTHO05D002637 1.3e-15 86.7 95 43.2
COL.COLO4_30481 Corchorus olitorius HOM05D000454 ORTHO05D002637 1.6e-15 86.3 82 53.7
Cfa012706 Carpinus fangiana HOM05D000454 ORTHO05D002637 2.2e-15 85.9 61 68.9
RcHm_v2.0_Chr2g0139761 Rosa chinensis HOM05D000454 ORTHO05D002637 4.8e-15 84.7 76 61.8
FvH4_6g32100 Fragaria vesca HOM05D000454 ORTHO05D002637 6.3e-15 84.3 76 60.5
FAN14G0706 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.3e-15 84.3 76 60.5
Nn3g18151 Nelumbo nucifera HOM05D000454 ORTHO05D002637 6.3e-15 84.3 76 46.1
Cfa003673 Carpinus fangiana HOM05D000454 ORTHO05D002637 1.1e-14 83.6 60 58.3
ATR0315G145 Amborella trichopoda HOM05D000454 ORTHO05D002637 1.4e-14 83.2 59 59.3
Haze_15818 Corylus avellana HOM05D000454 ORTHO05D002637 1.4e-14 83.2 60 58.3
MD17G1187000 Malus domestica HOM05D000454 ORTHO05D002637 1.4e-14 83.2 80 56.2
MELO3C024269.2 Cucumis melo HOM05D000454 ORTHO05D002637 1.8e-14 82.8 88 48.9
CsaV3_7G033580 Cucumis sativus L. HOM05D000454 ORTHO05D002637 1.8e-14 82.8 65 61.5
CiPaw.01G233400 Carya illinoinensis HOM05D000454 ORTHO05D002637 2.4e-14 82.4 61 62.3
Haze_07928 Corylus avellana HOM05D000454 ORTHO05D002637 2.4e-14 82.4 62 67.7
FAN05G3019 Fragaria x ananassa HOM05D000454 ORTHO05D002637 6.9e-14 80.9 76 55.3
TWI12G0592 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 1.2e-13 80.1 81 43.2
ClCG09G001750 Citrullus lanatus HOM05D000454 ORTHO05D002637 1.5e-13 79.7 61 60.7
Sabra18G0042900 Salix brachista HOM05D000454 ORTHO05D002637 1.5e-13 79.7 62 53.2
MBI04_g02616_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 2.0e-13 79.3 60 53.3
Potri.018G042200 Populus trichocarpa HOM05D000454 ORTHO05D002637 2.0e-13 79.3 62 54.8
PGR102G3036 Punica granatum HOM05D000454 ORTHO05D002637 2.0e-13 79.3 61 52.5
Dinv37996 Davidia involucrata HOM05D000454 ORTHO05D002637 2.6e-13 79.0 61 59.0
GSVIVG01017031001 Vitis vinifera HOM05D000454 ORTHO05D002637 4.5e-13 78.2 61 59.0
CiPaw.02G147100 Carya illinoinensis HOM05D000454 ORTHO05D002637 5.9e-13 77.8 60 58.3
Prupe.3G061800 Prunus persica HOM05D000454 ORTHO05D002637 5.9e-13 77.8 61 55.7
RcHm_v2.0_Chr1g0353591 Rosa chinensis HOM05D000454 ORTHO05D002637 1.0e-12 77.0 61 63.9
Hma1.2p1_0659F.1_g197390 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 1.3e-12 76.6 60 55.0
COL.COLO4_30483 Corchorus olitorius HOM05D000454 ORTHO05D002637 2.2e-12 75.9 59 61.0
Prupe.3G062200 Prunus persica HOM05D000454 ORTHO05D002637 2.2e-12 75.9 61 54.1
RcHm_v2.0_Chr2g0139771 Rosa chinensis HOM05D000454 ORTHO05D002637 2.9e-12 75.5 61 65.6
Cpa.g.sc7.266 Carica papaya HOM05D000454 ORTHO05D002637 3.8e-12 75.1 60 50.0
Manes.04G132102 Manihot esculenta HOM05D000454 ORTHO05D002637 3.8e-12 75.1 75 46.7
Dinv14254 Davidia involucrata HOM05D000454 ORTHO05D002637 6.5e-12 74.3 59 50.8
RcHm_v2.0_Chr2g0139851 Rosa chinensis HOM05D000454 ORTHO05D002637 6.5e-12 74.3 61 63.9
QL05p020685 Quercus lobata HOM05D000454 ORTHO05D002637 8.5e-12 73.9 60 53.3
BcaB06g27937 Brassica carinata HOM05D000454 ORTHO05D002637 1.1e-11 73.6 60 51.7
CSS0003218 Camellia sinensis var. sinensis HOM05D000454 ORTHO05D002637 1.9e-11 72.8 77 41.6
Ciclev10007796m.g Citrus clementina HOM05D000454 ORTHO05D002637 1.9e-11 72.8 60 50.0
FAN14G2323 Fragaria x ananassa HOM05D000454 ORTHO05D002637 2.5e-11 72.4 92 40.2
CsaV3_3G023710 Cucumis sativus L. HOM05D000454 ORTHO05D002637 3.2e-11 72.0 60 50.0
RcHm_v2.0_Chr2g0139991 Rosa chinensis HOM05D000454 ORTHO05D002637 3.2e-11 72.0 61 52.5
Atru.chr7.2100 Acer truncatum HOM05D000454 ORTHO05D002637 4.2e-11 71.6 60 46.7
Atru.chr7.2112 Acer truncatum HOM05D000454 ORTHO05D002637 4.2e-11 71.6 60 46.7
FAN05G3697 Fragaria x ananassa HOM05D000454 ORTHO05D002637 4.2e-11 71.6 61 50.8
Manes.04G132202 Manihot esculenta HOM05D000454 ORTHO05D002637 4.2e-11 71.6 99 41.4
A08p34030 Brassica napus HOM05D000904 ORTHO05D006931 5.5e-11 71.2 59 49.2
Ciclev10027021m.g Citrus clementina HOM05D000454 ORTHO05D002637 5.5e-11 71.2 91 38.5
Duzib168G0801 Durio zibethinus HOM05D000454 ORTHO05D002637 5.5e-11 71.2 60 51.7
FvH4_6g32122 Fragaria vesca HOM05D000454 ORTHO05D002637 5.5e-11 71.2 92 40.2
Sed0021062 Sechium edule HOM05D000454 ORTHO05D002637 5.5e-11 71.2 59 59.3
Sed0022178 Sechium edule HOM05D000454 ORTHO05D002637 5.5e-11 71.2 60 51.7
Thecc.09G043600 Theobroma cacao HOM05D000454 ORTHO05D002637 5.5e-11 71.2 60 51.7
Thhalv10007236m.g Eutrema salsugineum HOM05D000454 ORTHO05D002637 7.2e-11 70.9 59 50.8
MBI18_g43125_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 7.2e-11 70.9 60 51.7
Atru.chr7.2113 Acer truncatum HOM05D000454 ORTHO05D002637 9.4e-11 70.5 60 46.7
AT1G10340 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 9.4e-11 70.5 59 49.2
THA.LOC104799197 Tarenaya hassleriana HOM05D000454 ORTHO05D002637 9.4e-11 70.5 60 48.3
Lj8A587G30 Lonicera japonica HOM05D000454 ORTHO05D002637 1.2e-10 70.1 76 40.8
TWI34G0381 Tripterygium wilfordii HOM05D000454 ORTHO05D002637 1.2e-10 70.1 61 47.5
Aqoxy7G01501 Aquilegia oxysepala HOM05D000454 ORTHO05D002637 1.6e-10 69.7 60 50.0
DCAR_007717 Daucus carota HOM05D000454 ORTHO05D002637 1.6e-10 69.7 60 48.3
Lj8C577G8 Lonicera japonica HOM05D000454 ORTHO05D002637 1.6e-10 69.7 76 40.8
BcaNung05166 Brassica carinata HOM05D000904 ORTHO05D006931 2.7e-10 68.9 59 47.5
C08p13580 Brassica napus HOM05D000904 ORTHO05D006931 2.7e-10 68.9 59 47.5
BolC8t48998H Brassica oleracea HOM05D000904 ORTHO05D005281 2.7e-10 68.9 59 47.5
BraA08t35316Z Brassica rapa HOM05D000904 ORTHO05D005281 2.7e-10 68.9 59 47.5
Manes.04G132001 Manihot esculenta HOM05D000454 ORTHO05D002637 2.7e-10 68.9 61 52.5
SalBow4G0286 Salvia bowleyana HOM05D000454 ORTHO05D002637 2.7e-10 68.9 59 45.8
AL1G21080 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 3.6e-10 68.6 59 49.2
AL4G15180 Arabidopsis lyrata HOM05D000454 ORTHO05D002637 3.6e-10 68.6 59 50.8
Ciclev10025077m.g Citrus clementina HOM05D000454 ORTHO05D002637 3.6e-10 68.6 78 43.6
COL.COLO4_18654 Corchorus olitorius HOM05D000454 ORTHO05D002637 3.6e-10 68.6 60 50.0
Lj8C577G4 Lonicera japonica HOM05D000454 ORTHO05D002637 3.6e-10 68.6 59 44.1
Lj8C586G6 Lonicera japonica HOM05D000454 ORTHO05D002637 3.6e-10 68.6 59 44.1
Carub.0001s0976 Capsella rubella HOM05D000454 ORTHO05D002637 4.6e-10 68.2 59 49.2
Carub.0001s4235 Capsella rubella HOM05D000454 ORTHO05D002637 6.1e-10 67.8 59 49.2
CARHR010460 Cardamine hirsuta HOM05D000454 ORTHO05D002637 6.1e-10 67.8 77 42.9
ClCG07G013260 Citrullus lanatus HOM05D000454 ORTHO05D002637 6.1e-10 67.8 60 48.3
Oeu031552.2 Olea europaea HOM05D000454 ORTHO05D002637 6.1e-10 67.8 59 44.1
QL05p020728 Quercus lobata HOM05D000454 ORTHO05D002637 6.1e-10 67.8 60 50.0
QL93p0247_0007 Quercus lobata HOM05D000454 ORTHO05D002637 6.1e-10 67.8 60 50.0
BcaNung05231 Brassica carinata HOM05D000454 ORTHO05D002637 7.9e-10 67.4 60 48.3
Sed0002239 Sechium edule HOM05D000454 ORTHO05D002637 7.9e-10 67.4 60 48.3
AT5G54710 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 1.0e-09 67.0 61 47.5
C08p13600 Brassica napus HOM05D000454 ORTHO05D002637 1.0e-09 67.0 59 47.5
PSO782G3005 Papaver somniferum HOM05D000454 ORTHO05D002637 1.0e-09 67.0 88 35.2
HanXRQChr11g0352041 Helianthus annuus HOM05D000454 ORTHO05D002637 2.3e-09 65.9 59 45.8
AT2G24600 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 3.0e-09 65.5 59 50.8
Manes.11G035500 Manihot esculenta HOM05D000454 ORTHO05D002637 3.0e-09 65.5 60 50.0
Sed0028147 Sechium edule HOM05D000454 ORTHO05D002637 3.0e-09 65.5 60 45.0
C08p13640 Brassica napus HOM05D000454 ORTHO05D002637 3.9e-09 65.1 59 45.8
BolC8t49002H Brassica oleracea HOM05D000454 ORTHO05D002637 3.9e-09 65.1 59 45.8
PSO566G0187 Papaver somniferum HOM05D000454 ORTHO05D002637 3.9e-09 65.1 88 34.1
Potri.001G187600 Populus trichocarpa HOM05D000454 ORTHO05D002637 3.9e-09 65.1 61 54.1
Solyc08g066770.3 Solanum lycopersicum HOM05D000454 ORTHO05D002637 3.9e-09 65.1 59 44.1
BcaC02g08539 Brassica carinata HOM05D000454 ORTHO05D002637 5.1e-09 64.7 59 47.5
C04p53190 Brassica napus HOM05D000454 ORTHO05D002637 5.1e-09 64.7 59 47.5
BolC4t26875H Brassica oleracea HOM05D000454 ORTHO05D002637 5.1e-09 64.7 59 47.5
Nn3g18158 Nelumbo nucifera HOM05D000454 ORTHO05D002637 5.1e-09 64.7 64 50.0
Sopen08g020730 Solanum pennellii HOM05D000454 ORTHO05D002637 5.1e-09 64.7 59 42.4
Sopen08g020740 Solanum pennellii HOM05D000454 ORTHO05D002637 5.1e-09 64.7 59 42.4
A04p18170 Brassica napus HOM05D000454 ORTHO05D002637 6.7e-09 64.3 59 47.5
Ciclev10007811m.g Citrus clementina HOM05D000454 ORTHO05D002637 6.7e-09 64.3 76 43.4
Lsat_1_v5_gn_1_47140 Lactuca sativa HOM05D000454 ORTHO05D002637 6.7e-09 64.3 59 44.1
Manes.11G035400 Manihot esculenta HOM05D000454 ORTHO05D002637 6.7e-09 64.3 60 48.3
Actinidia39143 Actinidia chinensis HOM05D000454 ORTHO05D002637 8.8e-09 63.9 61 49.2
ECA248G1005 Erigeron canadensis HOM05D000454 ORTHO05D002637 1.5e-08 63.2 59 44.1
PGSC0003DMG400012067 Solanum tuberosum HOM05D000454 ORTHO05D002637 1.5e-08 63.2 59 42.4
FvH4_6g32123 Fragaria vesca HOM05D000454 ORTHO05D002637 1.9e-08 62.8 63 46.0
Manes.16G072800 Manihot esculenta HOM05D000454 ORTHO05D002637 1.9e-08 62.8 62 45.2
Oeu031549.1 Olea europaea HOM05D000454 ORTHO05D002637 1.9e-08 62.8 58 43.1
Thecc.06G097100 Theobroma cacao HOM05D000454 ORTHO05D002637 3.3e-08 62.0 59 52.5
Lj8A605G12 Lonicera japonica HOM05D000454 ORTHO05D002637 4.3e-08 61.6 59 40.7
MBI04_g02615_MAGBIO Magnolia biondii HOM05D000454 ORTHO05D002637 4.3e-08 61.6 60 50.0
Peaxi162Scf00161g00126 Petunia axillaris HOM05D000454 ORTHO05D002637 4.3e-08 61.6 75 34.7
COL.COLO4_30480 Corchorus olitorius HOM05D000454 ORTHO05D002637 5.7e-08 61.2 60 43.3
Hma1.2p1_1056F.1_g252690 Hydrangea macrophylla HOM05D000454 ORTHO05D002637 5.7e-08 61.2 73 41.1
Oeu012195.1 Olea europaea HOM05D000454 ORTHO05D002637 7.4e-08 60.8 59 42.4
RcHm_v2.0_Chr2g0140001 Rosa chinensis HOM05D000454 ORTHO05D002637 7.4e-08 60.8 63 44.4
Lsat_1_v5_gn_4_101061 Lactuca sativa HOM05D000454 ORTHO05D002637 9.7e-08 60.5 63 46.0
GSVIVG01035671001 Vitis vinifera HOM05D000454 ORTHO05D002637 1.3e-07 60.1 59 47.5
HanXRQChr09g0275911 Helianthus annuus HOM05D000454 ORTHO05D002637 1.7e-07 59.7 64 46.9
Lsat_1_v5_gn_4_99840 Lactuca sativa HOM05D000454 ORTHO05D002637 1.7e-07 59.7 62 48.4
Nitab4.5_0000837g0120 Nicotiana tabacum HOM05D000454 ORTHO05D002637 1.7e-07 59.7 56 41.1
CARHR268010 Cardamine hirsuta HOM05D000454 ORTHO05D002637 2.2e-07 59.3 61 49.2
Sp1g08940 Schrenkiella parvula HOM05D000454 ORTHO05D002637 2.2e-07 59.3 43 55.8
Sp2g30100 Schrenkiella parvula HOM05D000454 ORTHO05D002637 2.2e-07 59.3 58 46.6
Nitab4.5_0000151g0410 Nicotiana tabacum HOM05D000454 ORTHO05D002637 2.8e-07 58.9 56 41.1
BcaNung05167 Brassica carinata HOM05D000454 ORTHO05D002637 4.8e-07 58.2 60 43.3
PGSC0003DMG400004315 Solanum tuberosum HOM05D000454 ORTHO05D002637 4.8e-07 58.2 56 42.9
PGSC0003DMG400004319 Solanum tuberosum HOM05D000454 ORTHO05D002637 2.4e-06 55.8 54 40.7
TAR626G1687 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.4e-06 55.8 61 47.5
TAR636G2176 Trochodendron aralioides HOM05D000454 ORTHO05D002637 2.4e-06 55.8 61 47.5
AT1G34050 Arabidopsis thaliana HOM05D000454 ORTHO05D002637 3.1e-06 55.5 60 38.3
HanXRQChr09g0275901 Helianthus annuus HOM05D000454 ORTHO05D002637 3.1e-06 55.5 64 42.2
CARHR268030 Cardamine hirsuta HOM05D000454 ORTHO05D002637 5.3e-06 54.7 61 42.6


User provided reference genes

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