Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7321 Trifolium pratense HOM05D002721 ORTHO05D002919 2.6e-68 261.9 132 100.0
TPR.G26020 Trifolium pratense HOM05D002721 ORTHO05D002919 1.7e-64 249.2 132 95.5
TPR.G32551 Trifolium pratense HOM05D002721 ORTHO05D002919 4.0e-61 238.0 132 92.4
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 9.6e-47 190.3 131 74.0
Psat3g194160 Pisum sativum HOM05D002721 ORTHO05D002919 8.2e-46 187.2 133 71.4
Medtr7g017690 Medicago truncatula HOM05D002721 ORTHO05D002919 1.8e-40 169.5 132 68.2
arahy.Tifrunner.gnm1.ann1.AT6RDF Arachis hypogaea HOM05D002721 ORTHO05D002919 4.2e-34 148.3 134 59.7
arahy.Tifrunner.gnm1.ann1.8P3ZQ3 Arachis hypogaea HOM05D002721 ORTHO05D002919 3.6e-33 145.2 138 56.5
Phvul.008G024000 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 3.6e-33 145.2 130 60.8
VMungo1383G1347 Vigna mungo HOM05D002721 ORTHO05D002919 7.9e-33 144.1 125 60.0
Lalb_Chr17g0336741 Lupinus albus HOM05D002721 ORTHO05D002919 3.7e-30 135.2 133 54.9
Glyma.18G276900 Glycine max HOM05D002721 ORTHO05D002919 4.1e-29 131.7 135 53.3
Glyma.13G050900 Glycine max HOM05D002721 ORTHO05D002919 1.0e-27 127.1 139 54.7
TPR.G15931 Trifolium pratense HOM05D002721 ORTHO05D002919 1.7e-27 126.3 140 54.3
Lalb_Chr21g0318111 Lupinus albus HOM05D002721 ORTHO05D002919 1.4e-26 123.2 139 48.2
Lj1g0012113 Lotus japonicus HOM05D002721 ORTHO05D002919 1.9e-26 122.9 133 50.4
Lj2g0020384 Lotus japonicus HOM05D002721 ORTHO05D002919 5.5e-26 121.3 138 51.4
arahy.Tifrunner.gnm1.ann1.47TAEF Arachis hypogaea HOM05D002721 ORTHO05D002919 3.6e-25 118.6 137 50.4
Medtr3g086660 Medicago truncatula HOM05D002721 ORTHO05D002919 6.1e-25 117.9 136 52.9
Phvul.004G045500 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 8.8e-24 114.0 140 50.0
Glyma.19G037700 Glycine max HOM05D002721 ORTHO05D002919 6.3e-22 107.8 139 51.1
VMungo0464G2033 Vigna mungo HOM05D002721 ORTHO05D002919 3.8e-19 98.6 138 43.5
Sc10g0000490 Simmondsia chinensis HOM05D002721 ORTHO05D002919 3.2e-18 95.5 132 36.4
CSS0034394 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 5.5e-18 94.7 139 38.8
vmacro18116 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 5.5e-18 94.7 139 41.0
Dinv34891 Davidia involucrata HOM05D002721 ORTHO05D002919 7.2e-18 94.4 139 41.0
Prupe.3G246700 Prunus persica HOM05D002721 ORTHO05D002919 1.2e-17 93.6 139 41.0
Lalb_Chr04g0258291 Lupinus albus HOM05D002721 ORTHO05D002919 8.0e-17 90.9 110 50.9
Rhsim08G0078700 Rhododendron simsii HOM05D002721 ORTHO05D002919 8.0e-17 90.9 139 38.8
Atru.chr8.683 Acer truncatum HOM05D002721 ORTHO05D002919 1.8e-16 89.7 139 38.8
RcHm_v2.0_Chr6g0275231 Rosa chinensis HOM05D002721 ORTHO05D002919 6.7e-16 87.8 139 38.1
TAR371G1157 Trochodendron aralioides HOM05D002721 ORTHO05D002919 8.8e-16 87.4 139 37.4
Gohir.A12G056901 Gossypium hirsutum HOM05D002721 ORTHO05D002919 1.5e-15 86.7 139 34.5
COL.COLO4_25875 Corchorus olitorius HOM05D002721 ORTHO05D002919 7.4e-15 84.3 138 35.5
Gorai.008G059400 Gossypium raimondii HOM05D002721 ORTHO05D002919 7.4e-15 84.3 139 34.5
RcHm_v2.0_Chr2g0164391 Rosa chinensis HOM05D002721 ORTHO05D002919 2.8e-14 82.4 139 36.0
Thecc.04G110800 Theobroma cacao HOM05D002721 ORTHO05D002919 2.8e-14 82.4 139 36.0
Dinv33882 Davidia involucrata HOM05D002721 ORTHO05D002919 3.7e-14 82.0 134 38.1
CSS0049515 Camellia sinensis var. sinensis HOM05D002721 ORTHO05D002919 8.2e-14 80.9 138 36.2
FvH4_6g46070 Fragaria vesca HOM05D002721 ORTHO05D002919 8.2e-14 80.9 138 37.0
FAN14G2371 Fragaria x ananassa HOM05D000717 ORTHO05D000555 8.2e-14 80.9 138 37.0
QL03p073121 Quercus lobata HOM05D002721 ORTHO05D002919 8.2e-14 80.9 137 32.1
Peaxi162Scf00019g00315 Petunia axillaris HOM05D002721 ORTHO05D002919 1.1e-13 80.5 139 34.5
CiPaw.03G080900 Carya illinoinensis HOM05D002721 ORTHO05D002919 1.4e-13 80.1 139 36.7
FAN05G4529 Fragaria x ananassa HOM05D002721 ORTHO05D002919 1.4e-13 80.1 138 37.7
Thecc.02G319900 Theobroma cacao HOM05D002721 ORTHO05D002919 1.4e-13 80.1 136 33.1
TWI34G0100 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 1.4e-13 80.1 140 35.7
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.8e-13 79.7 139 34.5
Oeu007095.1 Olea europaea HOM05D002721 ORTHO05D002919 1.8e-13 79.7 139 36.7
PGSC0003DMG400026559 Solanum tuberosum HOM05D002721 ORTHO05D002919 1.8e-13 79.7 139 34.5
Duzib211G0355 Durio zibethinus HOM05D002721 ORTHO05D002919 2.4e-13 79.3 139 34.5
Migut.H00573 Erythranthe guttata HOM05D002721 ORTHO05D002919 2.4e-13 79.3 131 38.2
Aqoxy3G00575 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 3.1e-13 79.0 135 36.3
GSVIVG01036512001 Vitis vinifera HOM05D002721 ORTHO05D002919 4.1e-13 78.6 137 34.3
Cpa.g.c34209.1 Carica papaya HOM05D002721 ORTHO05D002919 5.3e-13 78.2 139 33.8
QL02p063553 Quercus lobata HOM05D002721 ORTHO05D002919 5.3e-13 78.2 135 34.8
ClCG01G007340 Citrullus lanatus HOM05D002721 ORTHO05D002919 7.0e-13 77.8 129 38.0
Nitab4.5_0002249g0070 Nicotiana tabacum HOM05D002721 ORTHO05D002919 9.1e-13 77.4 139 34.5
Sopen02g015870 Solanum pennellii HOM05D002721 ORTHO05D002919 9.1e-13 77.4 127 33.9
Dinv33997 Davidia involucrata HOM05D002721 ORTHO05D002919 1.2e-12 77.0 138 32.6
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 1.6e-12 76.6 134 32.8
Hma1.2p1_1348F.1_g277310 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 2.0e-12 76.3 138 34.8
TAR629G3028 Trochodendron aralioides HOM05D002721 ORTHO05D002919 2.0e-12 76.3 139 32.4
Cc07_g04670 Coffea canephora HOM05D002721 ORTHO05D002919 2.6e-12 75.9 131 35.9
Nitab4.5_0003203g0020 Nicotiana tabacum HOM05D002721 ORTHO05D002919 4.5e-12 75.1 139 33.8
Aqoxy3G03780 Aquilegia oxysepala HOM05D002721 ORTHO05D002919 5.9e-12 74.7 139 32.4
CANSAT64G2265 Cannabis sativa HOM05D002721 ORTHO05D002919 5.9e-12 74.7 135 32.6
Manes.01G105100 Manihot esculenta HOM05D002721 ORTHO05D002919 5.9e-12 74.7 139 36.7
GSVIVG01010127001 Vitis vinifera HOM05D002721 ORTHO05D002919 5.9e-12 74.7 144 31.9
MD09G1077300 Malus domestica HOM05D002721 ORTHO05D002919 7.7e-12 74.3 139 31.7
MD17G1067700 Malus domestica HOM05D002721 ORTHO05D002919 1.0e-11 73.9 139 32.4
CAN.G93.45 Capsicum annuum HOM05D002721 ORTHO05D002919 1.3e-11 73.6 139 32.4
Lj4P127T26 Lonicera japonica HOM05D002721 ORTHO05D002919 1.3e-11 73.6 139 33.8
MBI15_g42002_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.7e-11 73.2 132 31.8
Rhsim09G0119600 Rhododendron simsii HOM05D002721 ORTHO05D002919 1.7e-11 73.2 138 32.6
MELO3C005176.2 Cucumis melo HOM05D002721 ORTHO05D002919 2.9e-11 72.4 130 36.2
Hma1.2p1_0588F.1_g184620 Hydrangea macrophylla HOM05D002721 ORTHO05D002919 3.8e-11 72.0 139 33.8
COL.COLO4_27771 Corchorus olitorius HOM05D002721 ORTHO05D002919 5.0e-11 71.6 137 29.9
TWI32G1231 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 8.5e-11 70.9 133 33.1
EL10Ac4g08045 Beta vulgaris HOM05D002721 ORTHO05D002919 1.1e-10 70.5 134 32.8
CANSAT64G0632 Cannabis sativa HOM05D002721 ORTHO05D002919 1.1e-10 70.5 137 33.6
Sed0004629 Sechium edule HOM05D002721 ORTHO05D002919 1.1e-10 70.5 129 36.4
Haze_14356 Corylus avellana HOM05D002721 ORTHO05D002919 1.5e-10 70.1 89 40.4
Oeu062192.1 Olea europaea HOM05D002721 ORTHO05D002919 1.5e-10 70.1 138 35.5
DCAR_026695 Daucus carota HOM05D002721 ORTHO05D002919 1.9e-10 69.7 126 34.1
SGA_v2.0_scaffold4G02351 Striga asiatica HOM05D002721 ORTHO05D002919 1.9e-10 69.7 138 34.8
Cfa007718 Carpinus fangiana HOM05D002721 ORTHO05D002919 3.2e-10 68.9 89 39.3
Ciclev10011306m.g Citrus clementina HOM05D002721 ORTHO05D002919 3.2e-10 68.9 140 35.7
PSO782G5409 Papaver somniferum HOM05D002721 ORTHO05D002919 3.2e-10 68.9 136 30.9
CsaV3_5G018810 Cucumis sativus L. HOM05D002721 ORTHO05D002919 4.2e-10 68.6 129 35.7
Oeu033419.1 Olea europaea HOM05D002721 ORTHO05D002919 4.2e-10 68.6 94 40.4
FvH4_2g13612 Fragaria vesca HOM05D002721 ORTHO05D002919 5.5e-10 68.2 140 35.0
PSO063G3792 Papaver somniferum HOM05D002721 ORTHO05D002919 5.5e-10 68.2 135 30.4
ATR0691G037 Amborella trichopoda HOM05D002721 ORTHO05D002919 7.2e-10 67.8 125 32.8
Gorai.013G098800 Gossypium raimondii HOM05D002721 ORTHO05D002919 7.2e-10 67.8 136 29.4
MD16G1053400 Malus domestica HOM05D002721 ORTHO05D002919 7.2e-10 67.8 137 32.1
Actinidia13414 Actinidia chinensis HOM05D002721 ORTHO05D002919 9.4e-10 67.4 138 31.9
Ah.10g038340 Amaranthus hybridus HOM05D002721 ORTHO05D002919 9.4e-10 67.4 134 31.3
Dinv15572 Davidia involucrata HOM05D002721 ORTHO05D002919 9.4e-10 67.4 138 32.6
Sabra17G0089400 Salix brachista HOM05D002721 ORTHO05D002919 9.4e-10 67.4 133 33.1
ClCG07G016160 Citrullus lanatus HOM05D002721 ORTHO05D002919 1.2e-09 67.0 134 33.6
Manes.02G061500 Manihot esculenta HOM05D002721 ORTHO05D002919 1.2e-09 67.0 139 33.8
Cfa008829 Carpinus fangiana HOM05D002721 ORTHO05D002919 2.1e-09 66.2 96 38.5
Haze_11843 Corylus avellana HOM05D002721 ORTHO05D002919 2.1e-09 66.2 99 39.4
HanXRQChr07g0200091 Helianthus annuus HOM05D002721 ORTHO05D002919 2.1e-09 66.2 135 34.8
vmacro10459 Vaccinium macrocarpon HOM05D002721 ORTHO05D002919 2.1e-09 66.2 138 27.5
Aa31LG3G15810 Aethionema arabicum HOM05D002721 ORTHO05D002919 2.7e-09 65.9 139 35.3
unitig_52.g17630 Utricularia gibba HOM05D002721 ORTHO05D002919 2.7e-09 65.9 134 33.6
arahy.Tifrunner.gnm1.ann1.EIW9IC Arachis hypogaea HOM05D002721 ORTHO05D002919 3.6e-09 65.5 133 30.1
Duzib248G1050 Durio zibethinus HOM05D002721 ORTHO05D002919 3.6e-09 65.5 139 30.9
Glyma.02G125400 Glycine max HOM05D002721 ORTHO05D002919 3.6e-09 65.5 129 32.6
Lj6A772G33 Lonicera japonica HOM05D002721 ORTHO05D002919 3.6e-09 65.5 138 30.4
Duzib251G0850 Durio zibethinus HOM05D002721 ORTHO05D002919 4.7e-09 65.1 124 29.8
MD13G1054600 Malus domestica HOM05D002721 ORTHO05D002919 4.7e-09 65.1 137 29.9
RcHm_v2.0_Chr4g0437011 Rosa chinensis HOM05D002721 ORTHO05D002919 4.7e-09 65.1 134 29.1
Gohir.D13G086700 Gossypium hirsutum HOM05D002721 ORTHO05D002919 6.1e-09 64.7 136 29.4
PGR042G0929 Punica granatum HOM05D002721 ORTHO05D002919 6.1e-09 64.7 135 31.9
Phvul.002G083200 Phaseolus vulgaris HOM05D002721 ORTHO05D002919 8.0e-09 64.3 133 30.8
Prupe.1G297300 Prunus persica HOM05D002721 ORTHO05D002919 8.0e-09 64.3 137 31.4
Sabra04G0073100 Salix brachista HOM05D002721 ORTHO05D002919 8.0e-09 64.3 138 29.7
Potri.017G106400 Populus trichocarpa HOM05D002721 ORTHO05D002919 1.0e-08 63.9 138 31.2
MSTRG.2964 Avicennia marina HOM05D002721 ORTHO05D002919 1.4e-08 63.5 89 42.7
Eucgr.G02406 Eucalyptus grandis HOM05D002721 ORTHO05D002919 1.4e-08 63.5 139 28.8
Lsat_1_v5_gn_2_86000 Lactuca sativa HOM05D002721 ORTHO05D002919 1.8e-08 63.2 134 30.6
MBI14_g08213_MAGBIO Magnolia biondii HOM05D002721 ORTHO05D002919 1.8e-08 63.2 132 29.5
MELO3C018912.2 Cucumis melo HOM05D002721 ORTHO05D002919 2.3e-08 62.8 134 32.8
Peaxi162Scf00188g00812 Petunia axillaris HOM05D002721 ORTHO05D002919 2.3e-08 62.8 138 31.2
FvH4_4g28890 Fragaria vesca HOM05D002721 ORTHO05D002919 3.0e-08 62.4 134 29.9
FAN12G1937 Fragaria x ananassa HOM05D002721 ORTHO05D002919 3.0e-08 62.4 134 29.9
FAN22G0742 Fragaria x ananassa HOM05D002721 ORTHO05D002919 3.0e-08 62.4 134 29.9
arahy.Tifrunner.gnm1.ann1.B0WRJ9 Arachis hypogaea HOM05D002721 ORTHO05D002919 4.0e-08 62.0 133 29.3
CAN.G182.5 Capsicum annuum HOM05D002721 ORTHO05D002919 4.0e-08 62.0 138 27.5
Cpa.g.sc1414.3 Carica papaya HOM05D002721 ORTHO05D002919 4.0e-08 62.0 135 32.6
FAN17G0692 Fragaria x ananassa HOM05D002721 ORTHO05D002919 4.0e-08 62.0 134 29.1
VMungo1215G0663 Vigna mungo HOM05D002721 ORTHO05D002919 4.0e-08 62.0 133 30.1
Sed0019837 Sechium edule HOM05D002721 ORTHO05D002919 6.7e-08 61.2 134 32.1
HPP92_027783 Vanilla planifolia HOM05D002721 ORTHO05D002919 6.7e-08 61.2 128 27.3
CiPaw.04G050900 Carya illinoinensis HOM05D002721 ORTHO05D002919 8.8e-08 60.8 116 33.6
Ca_05183_v3 Cicer arietinum L. HOM05D002721 ORTHO05D002919 8.8e-08 60.8 131 32.8
Cc11_g11350 Coffea canephora HOM05D002721 ORTHO05D002919 8.8e-08 60.8 133 27.8
FAN07G0888 Fragaria x ananassa HOM05D002721 ORTHO05D002919 8.8e-08 60.8 134 29.1
TWI75G0211 Tripterygium wilfordii HOM05D002721 ORTHO05D002919 8.8e-08 60.8 88 37.5
Zm00001eb347590 Zea mays HOM05D002721 ORTHO05D002919 8.8e-08 60.8 134 28.4
Cpa.g.sc570.3 Carica papaya HOM05D002721 ORTHO05D002919 1.5e-07 60.1 135 31.1
AUR62007844 Chenopodium quinoa HOM05D002721 ORTHO05D002919 1.5e-07 60.1 137 30.7
Oeu054586.2 Olea europaea HOM05D002721 ORTHO05D002919 1.5e-07 60.1 134 27.6
Ah.02g127570 Amaranthus hybridus HOM05D002721 ORTHO05D002919 2.0e-07 59.7 137 31.4
HanXRQChr07g0200081 Helianthus annuus HOM05D002721 ORTHO05D002919 2.0e-07 59.7 134 30.6
Potri.010G135900 Populus trichocarpa HOM05D002721 ORTHO05D002919 2.0e-07 59.7 134 29.1
Sabra10G0104500 Salix brachista HOM05D002721 ORTHO05D002919 2.0e-07 59.7 135 28.9
Sopen05g006410 Solanum pennellii HOM05D002721 ORTHO05D002919 2.0e-07 59.7 138 26.8
AUR62003038 Chenopodium quinoa HOM05D002721 ORTHO05D002919 2.6e-07 59.3 133 31.6
Glyma.01G068800 Glycine max HOM05D002721 ORTHO05D002919 2.6e-07 59.3 129 31.8
Os01g0235350 Oryza sativa ssp. japonica HOM05D002721 ORTHO05D002919 2.6e-07 59.3 121 33.1
Solyc02g065660.4 Solanum lycopersicum HOM05D002721 ORTHO05D002919 2.6e-07 59.3 113 31.0
THA.LOC104823876 Tarenaya hassleriana HOM05D002721 ORTHO05D002919 2.6e-07 59.3 132 31.1
Hund16254 Selenicereus undatus HOM05D002721 ORTHO05D002919 3.3e-07 58.9 134 28.4
ECA238G2894 Erigeron canadensis HOM05D002721 ORTHO05D002919 4.4e-07 58.5 139 31.7
Thhalv10012837m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 4.4e-07 58.5 136 33.1
Lalb_Chr10g0099321 Lupinus albus HOM05D002721 ORTHO05D002919 4.4e-07 58.5 133 30.8
AT1G68910 Arabidopsis thaliana HOM05D002721 ORTHO05D002919 5.7e-07 58.2 130 33.8
Carub.0002s1555 Capsella rubella HOM05D002721 ORTHO05D002919 5.7e-07 58.2 129 31.8
AUR62009452 Chenopodium quinoa HOM05D002721 ORTHO05D002919 5.7e-07 58.2 86 33.7
Solyc05g010590.4 Solanum lycopersicum HOM05D002721 ORTHO05D002919 5.7e-07 58.2 138 26.1
AL6G22030 Arabidopsis lyrata HOM05D002721 ORTHO05D002919 7.5e-07 57.8 147 31.3
Lj2g0017371 Lotus japonicus HOM05D002721 ORTHO05D002919 7.5e-07 57.8 129 31.0
Nitab4.5_0000259g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 7.5e-07 57.8 137 25.5
Nitab4.5_0006377g0010 Nicotiana tabacum HOM05D002721 ORTHO05D002919 9.7e-07 57.4 137 27.7
Oeu024143.1 Olea europaea HOM05D002721 ORTHO05D002919 9.7e-07 57.4 135 27.4
SalBow1G0101 Salvia bowleyana HOM05D002721 ORTHO05D002919 9.7e-07 57.4 113 36.3
AL2G27940 Arabidopsis lyrata HOM05D002721 ORTHO05D002919 1.7e-06 56.6 129 31.8
BcaC08g46345 Brassica carinata HOM05D002721 ORTHO05D002919 1.7e-06 56.6 129 31.0
C06p40920 Brassica napus HOM05D002721 ORTHO05D002919 1.7e-06 56.6 129 31.0
BolC6t39341H Brassica oleracea HOM05D002721 ORTHO05D002919 1.7e-06 56.6 129 31.0
CARHR061780 Cardamine hirsuta HOM05D002721 ORTHO05D002919 2.2e-06 56.2 126 34.1
Sp5g24050 Schrenkiella parvula HOM05D002721 ORTHO05D002919 2.2e-06 56.2 130 32.3
TPR.G2672 Trifolium pratense HOM05D002721 ORTHO05D002919 2.2e-06 56.2 129 31.8
AT5G11390 Arabidopsis thaliana HOM05D002721 ORTHO05D002919 2.8e-06 55.8 147 31.3
BraA07t31125Z Brassica rapa HOM05D002721 ORTHO05D002919 2.8e-06 55.8 129 31.0
CARHR201870 Cardamine hirsuta HOM05D002721 ORTHO05D002919 3.7e-06 55.5 137 32.1
A07p35320 Brassica napus HOM05D002721 ORTHO05D002919 4.8e-06 55.1 129 31.0
Thhalv10018242m.g Eutrema salsugineum HOM05D002721 ORTHO05D002919 4.8e-06 55.1 130 33.1
Lsat_1_v5_gn_2_86020 Lactuca sativa HOM05D002721 ORTHO05D002919 4.8e-06 55.1 139 33.1
ECA238G2773 Erigeron canadensis HOM05D000186 ORTHO05D002329 8.2e-06 54.3 137 29.9


User provided reference genes

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