Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G713 Trifolium pratense HOM05D005362 ORTHO05D006895 3.3e-47 191.4 102 100.0
TPR.G37431 Trifolium pratense HOM05D005362 ORTHO05D006895 3.3e-39 164.9 98 91.8
Psat7g043680 Pisum sativum HOM05D005362 ORTHO05D006895 1.2e-36 156.4 98 81.6
Medtr8g094650 Medicago truncatula HOM05D005362 ORTHO05D006895 3.5e-36 154.8 98 81.6
Lj2g0009795 Lotus japonicus HOM05D005362 ORTHO05D006895 5.5e-34 147.5 98 73.5
Ca_17613_v3 Cicer arietinum L. HOM05D005362 ORTHO05D006895 4.7e-33 144.4 98 74.5
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 3.0e-32 141.7 98 71.4
Glyma.20G225100 Glycine max HOM05D005362 ORTHO05D006895 3.4e-31 138.3 100 73.0
Phvul.007G187600 Phaseolus vulgaris HOM05D005362 ORTHO05D006895 7.5e-31 137.1 99 73.7
VMungo0720G1218 Vigna mungo HOM05D005362 ORTHO05D006895 1.7e-30 136.0 98 73.5
Glyma.10G162500 Glycine max HOM05D005362 ORTHO05D006895 4.8e-30 134.4 100 71.0
PGR044G2646 Punica granatum HOM05D005362 ORTHO05D006895 5.4e-29 131.0 100 69.0
CiPaw.11G055600 Carya illinoinensis HOM05D005362 ORTHO05D006895 1.6e-28 129.4 100 69.0
MD14G1214300 Malus domestica HOM05D005362 ORTHO05D006895 1.6e-28 129.4 100 68.0
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 2.0e-28 129.0 100 68.0
TWI81G0474 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 2.7e-28 128.6 99 64.6
THA.LOC104804616 Tarenaya hassleriana HOM05D005362 ORTHO05D006895 3.5e-28 128.3 100 69.0
Cfa014169 Carpinus fangiana HOM05D005362 ORTHO05D006895 1.3e-27 126.3 100 67.0
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 1.7e-27 125.9 100 67.0
Gohir.D12G186500 Gossypium hirsutum HOM05D005362 ORTHO05D006895 2.9e-27 125.2 100 66.0
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 8.6e-27 123.6 100 65.0
Gorai.008G199900 Gossypium raimondii HOM05D005362 ORTHO05D006895 1.1e-26 123.2 100 65.0
Duzib205G1468 Durio zibethinus HOM05D005362 ORTHO05D006895 1.5e-26 122.9 100 63.0
Lalb_Chr07g0178371 Lupinus albus HOM05D005362 ORTHO05D006895 1.9e-26 122.5 102 63.7
Sp2g24260 Schrenkiella parvula HOM05D005362 ORTHO05D006895 1.9e-26 122.5 100 64.0
Aa31LG11G2340 Aethionema arabicum HOM05D005362 ORTHO05D006895 2.5e-26 122.1 100 63.0
TWI15G0078 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 2.5e-26 122.1 99 63.6
Cpa.g.sc67.22 Carica papaya HOM05D005362 ORTHO05D006895 3.3e-26 121.7 100 64.0
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 4.2e-26 121.3 100 63.0
Thecc.03G104700 Theobroma cacao HOM05D005362 ORTHO05D006895 1.2e-25 119.8 100 62.0
Thhalv10004006m.g Eutrema salsugineum HOM05D005362 ORTHO05D006895 1.6e-25 119.4 100 62.0
Ciclev10019809m.g Citrus clementina HOM05D005362 ORTHO05D006895 2.1e-25 119.0 100 62.0
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 2.1e-25 119.0 100 62.0
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 2.1e-25 119.0 99 58.6
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 2.8e-25 118.6 99 60.6
Sabra17G0110200 Salix brachista HOM05D005362 ORTHO05D006895 2.8e-25 118.6 100 62.0
COL.COLO4_24316 Corchorus olitorius HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 60.0
FvH4_5g29994 Fragaria vesca HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 61.0
FAN08G0864 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 61.0
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 61.0
FAN18G1237 Fragaria x ananassa HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 61.0
Potri.017G133400 Populus trichocarpa HOM05D005362 ORTHO05D006895 3.6e-25 118.2 100 62.0
Atru.chr9.504 Acer truncatum HOM05D005362 ORTHO05D006895 6.1e-25 117.5 100 60.0
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 6.1e-25 117.5 100 61.0
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 8.0e-25 117.1 100 60.0
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.0e-24 116.7 99 60.6
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.0e-24 116.7 99 60.6
SGA_v2.0_scaffold28G11735 Striga asiatica HOM05D005362 ORTHO05D006895 1.0e-24 116.7 100 60.0
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 2.3e-24 115.5 100 63.0
Carub.0008s2165 Capsella rubella HOM05D005362 ORTHO05D006895 3.0e-24 115.2 100 61.0
AT5G60960 Arabidopsis thaliana HOM05D005362 ORTHO05D006895 4.0e-24 114.8 100 62.0
FAN06G4934 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.0e-24 114.8 101 59.4
RcHm_v2.0_Chr7g0224161 Rosa chinensis HOM05D005362 ORTHO05D006895 4.0e-24 114.8 100 61.0
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 5.2e-24 114.4 99 60.6
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 6.8e-24 114.0 100 61.0
CARHR274640 Cardamine hirsuta HOM05D005362 ORTHO05D006895 8.9e-24 113.6 100 61.0
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 1.2e-23 113.2 99 57.6
ClCG06G015530 Citrullus lanatus HOM05D005362 ORTHO05D006895 1.2e-23 113.2 100 58.0
FvH4_7g15150 Fragaria vesca HOM05D005362 ORTHO05D006895 1.5e-23 112.8 101 59.4
EL10Ac5g12946 Beta vulgaris HOM05D005362 ORTHO05D006895 2.0e-23 112.5 100 57.0
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.0e-23 112.5 100 61.0
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 2.6e-23 112.1 100 57.0
QL07p000780 Quercus lobata HOM05D005362 ORTHO05D006895 2.6e-23 112.1 101 56.4
Hund02565 Selenicereus undatus HOM05D005362 ORTHO05D006895 2.6e-23 112.1 100 59.0
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 2.6e-23 112.1 99 59.6
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 3.4e-23 111.7 99 57.6
AUR62033752 Chenopodium quinoa HOM05D005362 ORTHO05D006895 3.4e-23 111.7 100 59.0
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 5.7e-23 110.9 100 58.0
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 5.7e-23 110.9 100 58.0
MELO3C017241.2 Cucumis melo HOM05D005362 ORTHO05D006895 7.5e-23 110.5 99 55.6
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 9.8e-23 110.2 100 60.0
AL8G37580 Arabidopsis lyrata HOM05D005362 ORTHO05D006895 9.8e-23 110.2 100 60.0
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 9.8e-23 110.2 99 59.6
Dinv17441 Davidia involucrata HOM05D005362 ORTHO05D006895 1.7e-22 109.4 103 58.3
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 1.7e-22 109.4 100 61.0
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.7e-22 109.4 100 57.0
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.7e-22 109.4 100 57.0
vmacro08819 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.7e-22 109.4 100 59.0
BcaC06g33209 Brassica carinata HOM05D005362 ORTHO05D006895 2.2e-22 109.0 100 57.0
Sed0019900 Sechium edule HOM05D005362 ORTHO05D006895 3.7e-22 108.2 99 53.5
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 3.7e-22 108.2 100 57.0
unitig_749.g13428 Utricularia gibba HOM05D005362 ORTHO05D006895 3.7e-22 108.2 100 58.0
Nn3g17489 Nelumbo nucifera HOM05D005362 ORTHO05D006895 4.9e-22 107.8 99 58.6
SHI17437 Sapria himalayana HOM05D005362 ORTHO05D006895 4.9e-22 107.8 100 54.0
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 4.9e-22 107.8 100 57.0
CsaV3_1G003420 Cucumis sativus L. HOM05D005362 ORTHO05D006895 6.3e-22 107.5 99 53.5
ECA246G1962 Erigeron canadensis HOM05D005362 ORTHO05D006895 1.8e-21 105.9 100 58.0
SHI19627 Sapria himalayana HOM05D005362 ORTHO05D006895 3.1e-21 105.1 97 53.6
unitig_26.g9670 Utricularia gibba HOM05D005362 ORTHO05D006895 3.1e-21 105.1 100 55.0
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 4.1e-21 104.8 88 63.6
PSO478G3079 Papaver somniferum HOM05D005362 ORTHO05D006895 4.1e-21 104.8 100 57.0
Actinidia18977 Actinidia chinensis HOM05D005362 ORTHO05D006895 5.4e-21 104.4 100 58.0
PSO017G2639 Papaver somniferum HOM05D005362 ORTHO05D006895 1.2e-20 103.2 100 55.0
PSO170G2279 Papaver somniferum HOM05D005362 ORTHO05D006895 4.5e-20 101.3 100 55.0
CDE10G0094 Ceratophyllum demersum HOM05D005362 ORTHO05D006895 1.3e-19 99.8 99 51.5
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 7.3e-18 94.0 98 50.0
Eucgr.K02538 Eucalyptus grandis HOM05D005362 ORTHO05D006895 2.8e-17 92.0 100 54.0
vmacro16484 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 1.0e-16 90.1 99 48.5
RcHm_v2.0_Chr7g0183361 Rosa chinensis HOM05D005362 ORTHO05D006895 4.0e-16 88.2 99 47.5
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 8.9e-16 87.0 107 49.5
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 3.4e-15 85.1 99 47.5
HPP92_008261 Vanilla planifolia HOM05D005362 ORTHO05D006895 5.8e-15 84.3 99 44.4
HPP92_008265 Vanilla planifolia HOM05D005362 ORTHO05D006895 1.7e-14 82.8 99 43.4
FvH4_5g13580 Fragaria vesca HOM05D005362 ORTHO05D006895 2.2e-14 82.4 99 49.5
FAN18G3292 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.2e-14 82.4 99 49.5
FAN13G0622 Fragaria x ananassa HOM05D005362 ORTHO05D006895 4.1e-13 78.2 99 46.5
Ah.11g048060 Amaranthus hybridus HOM05D005362 ORTHO05D006895 7.0e-13 77.4 95 44.2
FAN08G0684 Fragaria x ananassa HOM05D005362 ORTHO05D006895 2.3e-11 72.4 98 41.8
ATR0618G438 Amborella trichopoda HOM05D005362 ORTHO05D006895 1.1e-10 70.1 101 43.6
Medtr1g052810 Medicago truncatula HOM05D005362 ORTHO05D006895 6.2e-09 64.3 41 80.5
Nitab4.5_0012631g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.9e-06 55.5 42 61.9
DCAR_022335 Daucus carota HOM05D005362 ORTHO05D006895 4.9e-06 54.7 42 61.9


User provided reference genes

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