Gene: AT5G60960

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G60960
  • Transcript Identifier AT5G60960.1
  • Gene Type Coding gene
  • Location Chr5 : 24528423-24529988 : negative

Gene Family Information

  • ID HOM05D005362
  • #Genes/#Species 142/87
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G60960.1
  • symbol PNM1
  • full_name PPR protein localized to the nucleus and mitochondria 1
  • uniprot Q9FME4

Descriptions

  • Description Pentatricopeptide repeat (PPR) superfamily protein
  • Computational description Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G61370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
IEA
GOA Databaseregulation of translation

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0005515
IEA
InterProprotein binding
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IEA
GOA Databasemitochondrion
GO:0005739
IDA, HDA
ISM, IBA
Gene Ontologymitochondrion1 4 5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
IBA
Gene Ontologynucleus1 4
GO:0005759
IEA
GOA Databasemitochondrial matrix

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
17.7.1.3.1 Protein biosynthesis.organelle machinery.mitochondrial ribosome.mitochondrial ribosome-associated proteins.regulatory protein (PNM1)