Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.1e-90 334.3 163 100.0
Medtr7g115360 Medicago truncatula HOM05D007517 ORTHO05D006922 7.3e-20 101.3 97 57.7
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.0e-18 97.4 55 78.2
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.0e-18 97.4 45 93.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.0e-18 97.4 45 93.3
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.0e-18 97.4 45 93.3
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 2.3e-18 96.3 45 91.1
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 4.4e-17 92.0 45 88.9
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 4.4e-17 92.0 46 84.8
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 9.8e-17 90.9 45 86.7
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 9.8e-17 90.9 45 86.7
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 9.8e-17 90.9 45 86.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.7e-16 90.1 44 88.6
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.7e-16 90.1 44 88.6
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-16 90.1 45 84.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.7e-16 90.1 45 84.4
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 3.7e-16 89.0 45 86.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.7e-16 89.0 45 86.7
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 3.7e-16 89.0 55 74.5
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 84.4
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 47 85.1
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 4.9e-16 88.6 45 86.7
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 6.4e-16 88.2 44 88.6
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 6.4e-16 88.2 45 86.7
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 8.3e-16 87.8 45 84.4
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 8.3e-16 87.8 45 84.4
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 8.3e-16 87.8 45 84.4
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.1e-15 87.4 45 82.2
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.1e-15 87.4 45 84.4
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.1e-15 87.4 45 84.4
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 1.4e-15 87.0 52 75.0
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.4e-15 87.0 45 84.4
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.4e-15 87.0 55 70.9
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 1.9e-15 86.7 62 64.5
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-15 86.7 45 84.4
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 1.9e-15 86.7 62 64.5
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 2.4e-15 86.3 43 86.0
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 3.2e-15 85.9 45 82.2
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.1e-15 85.5 45 82.2
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 4.1e-15 85.5 45 82.2
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 4.1e-15 85.5 45 82.2
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 4.1e-15 85.5 45 82.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 4.1e-15 85.5 52 73.1
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 5.4e-15 85.1 45 82.2
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 5.4e-15 85.1 45 84.4
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 7.0e-15 84.7 45 80.0
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 7.0e-15 84.7 45 82.2
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 7.0e-15 84.7 45 82.2
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 7.0e-15 84.7 43 86.0
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 7.0e-15 84.7 45 82.2
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 7.0e-15 84.7 45 80.0
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 9.2e-15 84.3 45 82.2
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 9.2e-15 84.3 43 86.0
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 9.2e-15 84.3 45 82.2
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 9.2e-15 84.3 45 80.0
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.2e-14 84.0 45 80.0
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 1.6e-14 83.6 45 80.0
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-14 83.2 45 80.0
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.0e-14 83.2 45 80.0
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.0e-14 83.2 45 80.0
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 2.0e-14 83.2 45 80.0
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.7e-14 82.8 45 77.8
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.7e-14 82.8 62 59.7
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 3.5e-14 82.4 44 81.8
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.5e-14 82.4 45 82.2
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.5e-14 82.4 45 80.0
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 4.6e-14 82.0 45 77.8
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 4.6e-14 82.0 45 82.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 6.0e-14 81.6 45 80.0
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.0e-14 81.6 45 77.8
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.0e-14 81.6 55 65.5
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 7.8e-14 81.3 45 77.8
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 7.8e-14 81.3 45 75.6
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.0e-13 80.9 45 75.6
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.3e-13 80.5 43 81.4
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 5.0e-13 78.6 74 48.6
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 6.6e-13 78.2 41 82.9
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 8.6e-13 77.8 40 85.0
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.1e-12 77.4 55 60.0
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.9e-12 76.6 45 66.7
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.5e-12 76.3 45 68.9
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 2.5e-12 76.3 45 71.1
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 6.2e-11 71.6 41 75.6
Glyma.03G248900 Glycine max HOM05D007517 ORTHO05D006922 1.8e-10 70.1 43 76.7
Glyma.19G246500 Glycine max HOM05D007517 ORTHO05D006922 1.8e-10 70.1 46 73.9
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-10 69.7 45 73.3
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.3e-10 69.7 53 56.6
Lj1g0011629 Lotus japonicus HOM05D007517 ORTHO05D006922 8.9e-10 67.8 77 49.4
TPR.G27065 Trifolium pratense HOM05D007517 ORTHO05D006922 2.0e-09 66.6 50 62.0
Medtr1g080510 Medicago truncatula HOM05D007517 ORTHO05D006922 4.4e-09 65.5 43 67.4
Phvul.006G103600 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 7.5e-09 64.7 49 63.3
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 2.9e-08 62.8 29 86.2
Glyma.20G226400 Glycine max HOM05D007517 ORTHO05D006922 1.9e-07 60.1 48 64.6
Lalb_Chr21g0311071 Lupinus albus HOM05D007517 ORTHO05D006922 2.4e-07 59.7 34 76.5
Phvul.007G189000 Phaseolus vulgaris HOM05D007517 ORTHO05D006922 4.1e-07 58.9 45 62.2
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 7.1e-07 58.2 39 71.8
Thecc.05G277600 Theobroma cacao HOM05D007517 ORTHO05D006922 2.7e-06 56.2 45 60.0


User provided reference genes

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