Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 8.4e-106 387.1 207 100.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 1.0e-82 310.5 205 84.9
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 2.7e-80 302.4 202 83.2
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.9e-71 271.9 203 74.4
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 5.2e-63 245.0 205 70.2
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 6.7e-63 244.6 207 69.1
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.5e-62 243.4 207 68.6
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-62 242.3 207 67.6
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-62 242.3 207 67.6
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.3e-62 242.3 207 67.6
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 5.7e-62 241.5 202 69.8
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 9.7e-62 240.7 207 68.1
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 2.8e-61 239.2 205 67.8
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 3.7e-61 238.8 207 68.6
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 3.7e-61 238.8 208 68.3
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.4e-60 236.9 207 68.1
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 3.1e-60 235.7 207 66.7
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 5.3e-60 235.0 207 67.1
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.6e-59 233.4 207 66.2
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 2.0e-59 233.0 207 65.2
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 2.7e-59 232.6 208 65.9
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.7e-59 232.6 205 67.3
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 4.5e-59 231.9 205 68.8
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.7e-59 231.1 210 66.2
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 7.7e-59 231.1 205 67.3
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.0e-58 230.7 207 67.1
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 1.7e-58 229.9 211 66.8
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 2.2e-58 229.6 207 67.1
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.1e-57 227.3 197 69.5
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.5e-57 226.9 210 63.8
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 3.2e-57 225.7 206 64.6
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.2e-57 225.3 208 63.9
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 4.2e-57 225.3 210 65.7
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 4.2e-57 225.3 204 66.7
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 5.5e-57 224.9 216 66.2
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 7.2e-57 224.6 210 64.8
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 9.4e-57 224.2 208 65.9
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 9.4e-57 224.2 205 64.4
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.6e-56 223.4 205 65.4
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.6e-56 223.4 206 63.1
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 2.7e-56 222.6 200 66.0
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 3.6e-56 222.2 205 65.4
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 4.7e-56 221.9 197 68.5
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 8.0e-56 221.1 200 68.0
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 8.0e-56 221.1 209 64.6
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.4e-55 220.3 201 65.7
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.8e-55 219.9 205 64.9
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 1.8e-55 219.9 205 66.3
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.3e-55 219.5 207 64.3
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 4.0e-55 218.8 206 62.6
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 5.2e-55 218.4 207 66.7
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 6.8e-55 218.0 203 62.6
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 8.8e-55 217.6 206 62.6
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 1.2e-54 217.2 208 65.4
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 1.2e-54 217.2 203 65.5
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 5.7e-54 214.9 201 67.7
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 7.5e-54 214.5 216 61.6
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 7.5e-54 214.5 209 64.1
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 9.8e-54 214.2 203 64.0
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.2e-53 213.0 213 61.0
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 3.7e-53 212.2 206 63.1
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 8.3e-53 211.1 207 62.8
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 8.3e-53 211.1 208 59.1
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 1.4e-52 210.3 211 62.1
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 1.8e-52 209.9 216 60.2
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.1e-52 208.8 207 61.8
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 9.1e-52 207.6 210 60.5
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.2e-51 207.2 212 59.4
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.2e-51 207.2 208 62.5
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-51 207.2 207 61.4
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.2e-51 207.2 207 58.9
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 2.7e-51 206.1 208 60.6
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 2.7e-51 206.1 208 60.6
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 2.7e-51 206.1 210 59.0
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-51 205.7 207 60.4
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-51 205.7 207 60.4
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 3.5e-51 205.7 211 59.2
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 4.5e-51 205.3 208 59.1
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 5.9e-51 204.9 209 59.8
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 1.7e-50 203.4 207 60.9
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 8.6e-50 201.1 208 58.7
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 8.6e-50 201.1 205 62.9
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 8.6e-50 201.1 212 59.9
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 1.9e-49 199.9 209 60.3
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 3.3e-49 199.1 204 60.8
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 7.2e-49 198.0 205 58.5
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 7.2e-49 198.0 206 58.7
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 7.2e-49 198.0 205 62.0
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 9.5e-49 197.6 209 59.8
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 1.2e-48 197.2 199 62.3
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 1.6e-48 196.8 206 60.2
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 2.8e-48 196.1 196 58.7
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 4.7e-48 195.3 209 56.5
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 4.7e-48 195.3 209 56.5
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.0e-47 194.1 204 59.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.8e-47 193.4 207 58.9
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.8e-47 193.4 201 63.2
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 2.3e-47 193.0 211 55.9
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 2.3e-47 193.0 211 55.9
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 2.3e-47 193.0 200 61.0
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 3.0e-47 192.6 203 58.6
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 5.2e-47 191.8 213 56.3
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 1.2e-46 190.7 208 55.8
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.5e-46 190.3 210 54.8
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.5e-46 190.3 205 57.1
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 2.0e-46 189.9 198 56.1
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 5.7e-46 188.3 208 54.8
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 5.7e-46 188.3 208 54.8
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 7.5e-46 188.0 163 63.8
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.3e-45 187.2 209 56.9
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 1.7e-45 186.8 208 54.3
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.7e-45 186.8 209 56.0
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.2e-45 186.4 207 56.5
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 3.7e-45 185.7 173 64.2
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 1.8e-44 183.3 207 56.0
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 3.1e-44 182.6 207 54.1
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.1e-44 182.2 209 55.0
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 9.2e-44 181.0 211 53.6
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 1.6e-43 180.3 207 55.6
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.0e-43 179.9 207 55.1
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.0e-43 179.9 206 54.9
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.7e-43 179.5 149 69.8
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 3.5e-43 179.1 208 53.4
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 7.8e-43 177.9 207 52.7
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 7.8e-43 177.9 207 52.7
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 2.3e-42 176.4 207 53.1
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 3.8e-42 175.6 152 71.7
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 5.0e-42 175.3 204 53.4
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 5.0e-42 175.3 207 54.1
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 2.1e-40 169.9 157 61.1
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 6.4e-37 158.3 141 61.0
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 8.3e-37 157.9 208 51.4
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.6e-35 153.7 158 57.0
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 6.0e-35 151.8 202 47.5
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 7.8e-35 151.4 194 48.5
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.7e-34 150.2 202 47.5
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.5e-33 147.1 207 48.8
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 1.9e-33 146.7 115 66.1
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 1.4e-31 140.6 174 55.2
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 4.0e-31 139.0 174 56.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.5e-30 137.1 177 48.0
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.4e-28 129.8 157 45.9
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.2e-28 129.4 157 47.1
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.2e-28 129.4 167 44.9
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 7.8e-27 124.8 164 44.5
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.9e-26 122.5 157 47.1
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 5.2e-23 112.1 122 58.2
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.7e-21 105.9 148 48.0
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.6e-19 100.5 156 44.9
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 3.5e-19 99.4 136 47.1
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 6.0e-19 98.6 135 51.9
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 1.5e-17 94.0 197 41.1
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.5e-17 93.2 136 47.8
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.5e-17 93.2 77 63.6
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.4e-15 87.4 114 50.9
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.9e-15 84.7 120 48.3
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.4e-14 82.8 136 44.9
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 4.9e-13 79.0 116 42.2
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 1.9e-09 67.0 92 50.0
MCO16G101 Micromonas commoda HOM05D004549 ORTHO05D005390 9.0e-07 58.2 110 34.5


User provided reference genes

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