Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 1.8e-53 212.2 101 100.0
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 3.4e-28 128.3 102 61.8
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 5.9e-28 127.5 94 68.1
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 1.3e-22 109.8 103 62.1
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 1.3e-22 109.8 63 90.5
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 1.8e-21 105.9 64 87.5
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 1.5e-20 102.8 62 85.5
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 1.7e-19 99.4 137 45.3
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 2.2e-19 99.0 138 45.7
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 2.2e-19 99.0 139 46.0
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 5.0e-19 97.8 139 45.3
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 8.5e-19 97.1 136 44.9
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 2.5e-18 95.5 138 44.2
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 3.2e-18 95.1 134 45.5
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 2.7e-17 92.0 72 72.2
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 2.7e-17 92.0 73 72.6
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 4.7e-17 91.3 69 75.4
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 6.1e-17 90.9 141 41.8
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 6.1e-17 90.9 141 41.8
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 6.1e-17 90.9 141 41.8
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 1.4e-16 89.7 70 72.9
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 1.8e-16 89.4 135 44.4
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 3.0e-16 88.6 67 74.6
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 5.1e-16 87.8 132 43.9
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 5.1e-16 87.8 70 71.4
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 6.7e-16 87.4 100 53.0
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 8.8e-16 87.0 69 71.0
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 8.8e-16 87.0 70 71.4
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 1.1e-15 86.7 71 71.8
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 2.0e-15 85.9 71 69.0
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 2.6e-15 85.5 71 69.0
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 3.3e-15 85.1 75 61.3
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 7.4e-15 84.0 71 64.8
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 7.4e-15 84.0 71 64.8
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 7.4e-15 84.0 65 72.3
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 7.4e-15 84.0 103 47.6
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 2.2e-14 82.4 66 69.7
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 2.2e-14 82.4 65 72.3
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 2.8e-14 82.0 69 65.2
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 2.8e-14 82.0 68 69.1
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 3.7e-14 81.6 99 53.5
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 3.7e-14 81.6 130 40.8
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 4.8e-14 81.3 68 69.1
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 4.8e-14 81.3 65 69.2
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 6.3e-14 80.9 68 64.7
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 6.3e-14 80.9 103 51.5
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.1e-13 80.1 95 48.4
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 1.1e-13 80.1 71 64.8
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 1.4e-13 79.7 67 70.1
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.4e-13 79.7 95 48.4
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 1.8e-13 79.3 101 47.5
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 1.8e-13 79.3 65 67.7
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.8e-13 79.3 95 48.4
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 1.8e-13 79.3 72 62.5
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 2.4e-13 79.0 72 63.9
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 2.4e-13 79.0 71 64.8
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 4.1e-13 78.2 69 65.2
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 4.1e-13 78.2 68 66.2
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 4.1e-13 78.2 68 67.6
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 4.1e-13 78.2 65 64.6
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 5.3e-13 77.8 65 66.2
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 7.0e-13 77.4 71 60.6
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 9.1e-13 77.0 63 68.3
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 9.1e-13 77.0 65 66.2
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 9.1e-13 77.0 95 48.4
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 9.1e-13 77.0 69 66.7
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 1.2e-12 76.6 68 63.2
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.2e-12 76.6 70 64.3
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 1.6e-12 76.3 68 64.7
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 2.0e-12 75.9 177 33.3
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 2.0e-12 75.9 65 64.6
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 2.0e-12 75.9 69 65.2
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 3.5e-12 75.1 63 68.3
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 4.5e-12 74.7 65 64.6
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 5.9e-12 74.3 71 63.4
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 5.9e-12 74.3 138 40.6
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 5.9e-12 74.3 66 68.2
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 7.7e-12 73.9 67 64.2
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 1.0e-11 73.6 71 57.7
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 1.3e-11 73.2 72 58.3
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 1.3e-11 73.2 72 58.3
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 1.3e-11 73.2 63 65.1
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.7e-11 72.8 67 64.2
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 1.7e-11 72.8 67 64.2
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 2.2e-11 72.4 138 34.8
Nitab4.5_0016624g0010 Nicotiana tabacum HOM05D002138 ORTHO05D002106 2.9e-11 72.0 35 82.9
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 3.8e-11 71.6 99 46.5
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 3.8e-11 71.6 64 67.2
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 3.8e-11 71.6 66 63.6
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 5.0e-11 71.2 72 56.9
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 5.0e-11 71.2 68 67.6
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 5.0e-11 71.2 71 59.2
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 8.5e-11 70.5 71 57.7
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 8.5e-11 70.5 71 60.6
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 8.5e-11 70.5 172 33.1
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 8.5e-11 70.5 65 60.0
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 1.1e-10 70.1 70 57.1
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 1.1e-10 70.1 65 64.6
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 1.1e-10 70.1 65 64.6
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 1.1e-10 70.1 65 64.6
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.1e-10 70.1 59 69.5
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 1.1e-10 70.1 67 62.7
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 1.9e-10 69.3 94 45.7
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 1.9e-10 69.3 96 45.8
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 1.9e-10 69.3 174 32.8
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 1.9e-10 69.3 69 59.4
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 2.5e-10 68.9 66 60.6
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 2.5e-10 68.9 66 60.6
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 2.5e-10 68.9 66 60.6
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 2.5e-10 68.9 71 60.6
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 2.5e-10 68.9 62 66.1
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 4.2e-10 68.2 70 61.4
Lj6g0027782 Lotus japonicus HOM05D002138 ORTHO05D002106 4.2e-10 68.2 71 60.6
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 5.5e-10 67.8 71 62.0
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 5.5e-10 67.8 167 31.1
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 1.2e-09 66.6 66 60.6
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 1.2e-09 66.6 66 57.6
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 2.1e-09 65.9 99 43.4
HanXRQChr10g0308931 Helianthus annuus HOM05D002138 ORTHO05D002106 2.7e-09 65.5 35 77.1
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 3.6e-09 65.1 64 57.8
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 3.6e-09 65.1 82 53.7
Mapoly0103s0036 Marchantia polymorpha HOM05D002138 ORTHO05D002106 8.0e-09 63.9 95 35.8
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.0e-08 63.5 125 34.4
AUR62002695 Chenopodium quinoa HOM05D002138 ORTHO05D002106 1.4e-08 63.2 59 61.0
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.8e-08 62.8 101 40.6
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 2.3e-08 62.4 68 58.8
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 2.3e-08 62.4 64 60.9
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 3.0e-08 62.0 64 57.8
SMO358G0140 Selaginella moellendorffii HOM05D002138 ORTHO05D002106 4.0e-08 61.6 172 29.7
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 8.8e-08 60.5 69 59.4
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 8.8e-08 60.5 51 60.8
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 8.8e-08 60.5 61 57.4
Lj1A1206T64 Lonicera japonica HOM05D021202 ORTHO05D009769 1.5e-07 59.7 47 46.8
HPP92_015683 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.5e-07 59.7 65 55.4
AUR62030152 Chenopodium quinoa HOM05D002138 ORTHO05D002106 2.0e-07 59.3 60 61.7
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 2.0e-07 59.3 185 29.7
Sabra01G0112300 Salix brachista HOM05D002138 ORTHO05D002106 2.0e-07 59.3 41 53.7
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 2.0e-07 59.3 65 55.4
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 2.6e-07 58.9 67 52.2
ClCG09G012100 Citrullus lanatus HOM05D002138 ORTHO05D002106 2.6e-07 58.9 35 62.9
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 2.6e-07 58.9 62 59.7
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 2.6e-07 58.9 64 56.2
Os12g0611000 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 3.3e-07 58.5 169 31.4
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 4.4e-07 58.2 69 58.0
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 4.4e-07 58.2 54 64.8
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 5.7e-07 57.8 68 51.5
Migut.M01935 Erythranthe guttata HOM05D002138 ORTHO05D002106 7.5e-07 57.4 61 57.4
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 9.7e-07 57.0 62 61.3
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.3e-06 56.6 42 50.0
ClCG10G001750 Citrullus lanatus HOM05D002138 ORTHO05D002106 1.3e-06 56.6 35 62.9
Zm00001eb050760 Zea mays HOM05D002138 ORTHO05D002106 1.7e-06 56.2 174 30.5
BraA09t38915Z Brassica rapa HOM05D021202 ORTHO05D002106 2.2e-06 55.8 38 55.3
Gohir.A05G111400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.8e-06 55.5 65 58.5
DCAR_005621 Daucus carota HOM05D002138 ORTHO05D002106 3.7e-06 55.1 37 54.1
Sopen02g009420 Solanum pennellii HOM05D002138 ORTHO05D000004 3.7e-06 55.1 59 54.2
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 3.7e-06 55.1 67 47.8
Zm00001eb161950 Zea mays HOM05D021202 ORTHO05D009769 8.2e-06 53.9 44 47.7


User provided reference genes

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