Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 6.4e-79 297.4 152 100.0
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 3.8e-71 271.6 154 88.3
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 1.2e-69 266.5 154 85.1
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 5.1e-60 234.6 154 73.4
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 2.5e-59 232.3 152 73.7
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 4.3e-59 231.5 152 71.7
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 9.0e-57 223.8 152 71.7
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 3.4e-56 221.9 152 73.7
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.7e-55 219.5 152 72.4
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 2.9e-55 218.8 152 72.4
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 2.9e-55 218.8 152 68.4
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 2.9e-55 218.8 151 72.2
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 5.0e-55 218.0 152 71.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 5.0e-55 218.0 152 68.4
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 6.5e-55 217.6 154 70.1
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 8.5e-55 217.2 152 68.4
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 8.5e-55 217.2 152 69.1
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.1e-54 216.9 148 75.7
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 1.4e-54 216.5 152 69.7
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 3.2e-54 215.3 152 67.8
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.2e-54 214.9 152 69.1
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.2e-54 214.2 152 69.1
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.2e-54 214.2 152 69.1
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.6e-53 211.8 152 67.1
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 3.6e-53 211.8 152 67.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 7.9e-53 210.7 152 67.1
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.9e-53 210.7 152 68.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.0e-52 210.3 152 67.8
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 1.0e-52 210.3 152 66.4
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.3e-52 209.1 152 66.4
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.9e-52 208.4 152 66.4
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 5.1e-52 208.0 152 66.4
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 5.1e-52 208.0 147 68.7
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 6.7e-52 207.6 152 68.4
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 8.8e-52 207.2 152 65.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-51 206.8 152 67.8
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 1.5e-51 206.5 152 65.8
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.6e-51 205.7 152 65.1
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 5.7e-51 204.5 152 64.5
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 5.7e-51 204.5 152 65.1
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.4e-51 204.1 152 65.8
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 9.7e-51 203.8 152 67.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 9.7e-51 203.8 152 64.5
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.7e-51 203.8 152 64.5
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.3e-50 203.4 152 66.4
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.7e-50 203.0 152 65.1
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.2e-50 202.6 152 66.4
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 2.8e-50 202.2 152 64.5
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 3.7e-50 201.8 152 64.5
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 3.7e-50 201.8 152 64.5
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.8e-50 201.4 152 64.5
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 4.8e-50 201.4 152 63.8
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 4.8e-50 201.4 152 64.5
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 8.2e-50 200.7 152 65.1
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 8.2e-50 200.7 152 64.5
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.1e-49 200.3 152 66.4
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.8e-49 199.5 152 63.8
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 4.1e-49 198.4 152 63.2
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 9.1e-49 197.2 152 63.2
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 1.2e-48 196.8 152 61.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.2e-48 196.8 154 63.6
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.5e-48 196.4 152 63.8
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 2.0e-48 196.1 152 63.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.0e-48 196.1 152 62.5
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.6e-48 195.7 152 62.5
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.6e-48 195.7 152 65.1
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 2.6e-48 195.7 152 62.5
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 3.4e-48 195.3 152 65.1
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 5.9e-48 194.5 149 63.1
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 5.9e-48 194.5 152 62.5
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 5.9e-48 194.5 152 62.5
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 7.7e-48 194.1 152 60.5
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.3e-47 193.4 152 59.2
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 1.3e-47 193.4 152 63.8
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-47 193.0 152 59.9
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 1.7e-47 193.0 152 61.2
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.7e-47 193.0 145 65.5
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 6.5e-47 191.0 152 62.5
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 6.5e-47 191.0 171 57.3
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.1e-46 190.3 153 64.7
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.1e-46 190.3 153 64.7
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 1.4e-46 189.9 154 61.0
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 1.9e-46 189.5 152 62.5
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.9e-46 189.5 152 62.5
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 4.2e-46 188.3 152 63.8
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 9.4e-46 187.2 147 63.9
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 1.6e-45 186.4 150 60.0
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.6e-45 186.4 152 66.4
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 2.1e-45 186.0 145 62.8
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 6.1e-45 184.5 134 64.9
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.0e-44 183.7 151 59.6
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.4e-44 183.3 152 62.5
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 5.2e-44 181.4 152 60.5
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 7.4e-43 177.6 130 65.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 9.7e-43 177.2 153 58.2
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 9.7e-43 177.2 153 58.2
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.3e-42 176.8 146 63.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 3.7e-42 175.3 153 58.2
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 3.7e-42 175.3 152 60.5
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 8.2e-42 174.1 153 57.5
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.1e-41 173.7 148 58.8
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 5.3e-41 171.4 150 55.3
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 7.0e-41 171.0 124 66.1
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 9.1e-41 170.6 152 55.3
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 3.5e-40 168.7 130 63.1
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.5e-40 168.7 147 59.2
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 3.5e-40 168.7 153 56.2
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 4.5e-40 168.3 211 45.0
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.3e-39 166.8 152 57.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 6.5e-39 164.5 147 58.5
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 6.5e-39 164.5 187 47.1
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 5.5e-38 161.4 160 54.4
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 9.4e-38 160.6 146 56.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 1.2e-37 160.2 104 68.3
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 2.1e-37 159.5 104 67.3
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.7e-37 158.3 104 71.2
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 8.0e-37 157.5 155 52.3
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 1.8e-36 156.4 151 51.0
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 2.3e-36 156.0 151 50.3
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 3.0e-36 155.6 100 74.0
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.0e-36 155.2 151 50.3
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 5.2e-36 154.8 151 50.3
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 8.8e-36 154.1 149 51.0
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.4e-33 146.7 125 55.2
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 5.3e-33 144.8 150 48.0
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 9.1e-33 144.1 105 61.9
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.6e-32 143.3 88 76.1
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 2.7e-32 142.5 150 50.0
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.5e-30 136.0 144 47.2
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.6e-29 133.3 101 62.4
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 4.8e-26 121.7 107 57.0
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.1e-25 119.0 142 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 6.5e-23 111.3 126 47.6
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 1.5e-22 110.2 127 47.2
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 4.0e-20 102.1 83 61.4
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.7e-19 98.2 58 79.3
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 5.7e-19 98.2 58 79.3
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 7.5e-19 97.8 50 90.0
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 1.2e-16 90.5 127 41.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 5.9e-16 88.2 150 36.7
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 8.0e-13 77.8 68 58.8
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 2.6e-11 72.8 103 35.9
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 2.0e-08 63.2 104 30.8
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 2.5e-06 56.2 68 50.0


User provided reference genes

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